Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001628

Physical Location & Seq

Genomic Coordinates Forward (+)

26479575 .. 26486638

Gene Structure 7064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG269100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTACTCGGGGCGGAGCCAGGTTGGGGCACGGTGGGTGTTGATGCGGTGTCGTCAGCCGCTATCCACAAAGATGAGGGCTGTACACTCTATTCTGATACCTATCAATACAGAAATAGGTAGGAGTTGGATTGGAGGAAGCGGAACAATGGCCGAGGCGGCTCAAATGGAGGACAATTCGAAACCGCAGAGGCACGGAAGCGACAGCAATGGAGATCTCGCATTGGAGAATGGCAGCTCAGGCGATGCTCATGATCAGCTTATGCAAATGGTCACGGAGCTCAAATTCCAGAACGAATTCCTCAAGTCTCAGATTGAAGGCTTCAGAGTGTGCAACCAGCAGAACCGAGTGAAGCCGTTTGAGGAAGAGAAGCAAACACGAGCTGCGGCAGAAAAGGCTCTGAAGCACCTTAGAGAAGAACACTTGGAAGCTGATTCAAGAGCGCAGGACCTCTCTGCAAAGCTAGCTGAAGGTCAGATTGTGTGGCTTCGTTTGCTTCACAAACGAGCAAAGCAGCGTATTCAAGATGTTCAAAAGGAAAAAGATGACATTGAGGCTCGATTTCGTGAAGTAACTGAAAGAGCTGAGCGAGCATTATCCCAACAGTCAGCATTGCAGCAAGAGCTTGACAAAACCAGGCAACAAGAAAACGATGCACTGAAAGCAATTGATGCTGAGAGACAACAATTAAGAAGTGCAAATAATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005794 GO:0005802 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0031984 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048193 GO:0048285 GO:0051179 GO:0051234 GO:0051321 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098791 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRIP

Protein Analysis

236

Amino Acids

26.96

Weight (kDa)

8.52

Isoelectric Point (pI)

54.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66030 AT5G66030 AT5G66030 AT5G66030
fragaria_vesca	FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521
malus_domestica	MD02G1119300.v1.1 MD15G1233300.v1.1
prunus_persica	Prupe.7G179600_v2.0.a1 Prupe.7G179600_v2.0.a1
pyrus_communis	pycom02g09300 pycom05g12530 pycom15g20780
rosa_chinensis	RchiOBHm_Chr2g0097451 RchiOBHm_Chr2g0097461 RchiOBHm_Chr2g0097561 RchiOBHm_Chr2g0097581 RchiOBHm_Chr6g0253501
rosa_laevigata	RLG00000007707 RLG00000016726
rosa_multiflora	Rmu_sc0003151.1_g000017 Rmu_sc0005929.1_g000013 Rmu_sc0009080.1_g000004 Rmu_sc0023738.1_g000001 Rmu_sc0023972.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144680 Rroxscaffold_4G00289770
rosa_rugosa	Rorug02G0067100 Rorug02G0067200 Rorug02G0067300 Rorug02G0067400 Rorug05G0050700
rosa_samantha	Rh2AG113500 Rh2BG116600 Rh2CG118600 Rh2DG117600 Rh3AG216100 Rh3BG375000 Rh3CG269100 Rh3DG243100 Rh4BG210200 Rh4BG210300
rosa_wichuraiana	Rw2G008900 Rw2G019040 Rw3G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	13, 46, 59, 141, 158, 185, 386
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	2 cut(s)	284, 296
AcuI	CTGAAG	3 cut(s)	307, 422, 489
AfaI	GTAC	2 cut(s)	5, 84
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	4 cut(s)	317, 438, 524, 533
AjnI	CCWGG	2 cut(s)	18, 635
AluBI	AGCT	9 cut(s)	237, 259, 280, 383, 431, 463, 467, 584, 625
AluI	AGCT	9 cut(s)	237, 259, 280, 383, 431, 463, 467, 584, 625
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	2 cut(s)	312, 673
Ama87I	CYCGRG	1 cut(s)	7
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	4 cut(s)	234, 383, 514, 616
ApoI	RAATTY	2 cut(s)	284, 296
Asp700I	GAANNNNTTC	1 cut(s)	296
AspLEI	GCGC	1 cut(s)	445
AspS9I	GGNCC	1 cut(s)	448
AsuII	TTCGAA	1 cut(s)	179
AsuNHI	GCTAGC	1 cut(s)	463
AvaI	CYCGRG	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	448
BaeGI	GKGCMC	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	282
BauI	CACGAG	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	4 cut(s)	246, 370, 526, 628
BceAI	ACGGC	1 cut(s)	340
BciT130I	CCWGG	2 cut(s)	20, 637
BclI	TGATCA	1 cut(s)	253
BcoDI	GTCTC	2 cut(s)	312, 673
BfaI	CTAG	1 cut(s)	464
BglI	GCCNNNNNGGC	1 cut(s)	158
BglII	AGATCT	1 cut(s)	214
BisI	GCNGC	7 cut(s)	59, 159, 235, 384, 387, 515, 617
BlpI	GCTNAGC	1 cut(s)	585
BlsI	GCNGC	7 cut(s)	60, 160, 236, 385, 388, 516, 618
Bme1390I	CCNGG	2 cut(s)	20, 637
Bme18I	GGWCC	1 cut(s)	448
BmeT110I	CYCGRG	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	1 cut(s)	17
BmrFI	CCNGG	2 cut(s)	20, 637
BmsI	GCATC	4 cut(s)	33, 235, 643, 661
BmtI	GCTAGC	1 cut(s)	467
Bpu10I	CCTNAGC	1 cut(s)	238
Bpu1102I	GCTNAGC	1 cut(s)	585
Bpu14I	TTCGAA	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	287
BsaBI	GATNNNNATC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse3DI	GCAATG	2 cut(s)	214, 611
Bse8I	GATNNNNATC	1 cut(s)	101
BseBI	CCWGG	2 cut(s)	20, 637
BseDI	CCNNGG	1 cut(s)	153
BseJI	GATNNNNATC	1 cut(s)	101
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMI	GCAATG	2 cut(s)	214, 611
BseMII	CTCAG	4 cut(s)	252, 323, 576, 666
BseSI	GKGCMC	1 cut(s)	31
BseXI	GCAGC	4 cut(s)	246, 370, 526, 628
BshFI	GGCC	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	282
BsiHKCI	CYCGRG	1 cut(s)	7
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmAI	GTCTC	2 cut(s)	312, 673
BsnI	GGCC	1 cut(s)	152
BsoBI	CYCGRG	1 cut(s)	7
Bsp119I	TTCGAA	1 cut(s)	179
Bsp1286I	GDGCHC	2 cut(s)	31, 282
Bsp1407I	TGTACA	1 cut(s)	82
Bsp143I	GATC	2 cut(s)	214, 253
Bsp1720I	GCTNAGC	1 cut(s)	585
BspACI	CCGC	7 cut(s)	13, 46, 59, 141, 158, 185, 386
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	4 cut(s)	251, 322, 577, 667
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	17
BspOI	GCTAGC	1 cut(s)	467
BspT104I	TTCGAA	1 cut(s)	179
BsrDI	GCAATG	2 cut(s)	214, 611
BsrGI	TGTACA	1 cut(s)	82
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	2 cut(s)	214, 253
BssSI	CACGAG	1 cut(s)	378
Bst2BI	CACGAG	1 cut(s)	378
Bst2UI	CCWGG	2 cut(s)	20, 637
Bst4CI	ACNGT	2 cut(s)	33, 606
Bst6I	CTCTTC	1 cut(s)	360
BstAPI	GCANNNNNTGC	1 cut(s)	671
BstAUI	TGTACA	1 cut(s)	82
BstBI	TTCGAA	1 cut(s)	179
BstC8I	GCNNGC	2 cut(s)	465, 591
BstDEI	CTNAG	5 cut(s)	238, 309, 410, 585, 675
BstHHI	GCGC	1 cut(s)	445
BstKTI	GATC	2 cut(s)	217, 256
BstMAI	GTCTC	2 cut(s)	312, 673
BstMBI	GATC	2 cut(s)	214, 253
BstMWI	GCNNNNNNNGC	9 cut(s)	158, 240, 395, 464, 493, 590, 622, 662, 671
BstNI	CCWGG	2 cut(s)	20, 637
BstSCI	CCNGG	2 cut(s)	18, 635
BstSLI	GKGCMC	1 cut(s)	31
BstV1I	GCAGC	4 cut(s)	246, 370, 526, 628
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	152
BtgZI	GCGATG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	656
Cac8I	GCNNGC	2 cut(s)	465, 591
CciI	TCATGA	1 cut(s)	250
CfoI	GCGC	1 cut(s)	445
Cfr13I	GGNCC	1 cut(s)	448
Csp6I	GTAC	2 cut(s)	4, 83
CviAII	CATG	1 cut(s)	251
CviQI	GTAC	2 cut(s)	4, 83
DdeI	CTNAG	5 cut(s)	238, 309, 410, 585, 675
DpnI	GATC	2 cut(s)	216, 255
DpnII	GATC	2 cut(s)	214, 253
EaeI	YGGCCR	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
EciI	GGCGGA	1 cut(s)	28
Ecl136II	GAGCTC	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	448
Eco53kI	GAGCTC	1 cut(s)	280
Eco57I	CTGAAG	3 cut(s)	307, 422, 489
Eco88I	CYCGRG	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	280
EcoO109I	RGGNCCY	1 cut(s)	448
EcoRI	GAATTC	1 cut(s)	296
EcoRII	CCWGG	2 cut(s)	18, 635
EcoT38I	GRGCYC	1 cut(s)	282
FaeI	CATG	1 cut(s)	254
FaiI	YATR	2 cut(s)	252, 263
FatI	CATG	1 cut(s)	250
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	7 cut(s)	59, 159, 235, 384, 387, 515, 617
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	7 cut(s)	59, 159, 235, 384, 387, 515, 617
FspBI	CTAG	1 cut(s)	464
GlaI	GCGC	1 cut(s)	444
GluI	GCNGC	7 cut(s)	59, 159, 235, 384, 387, 515, 617
HaeIII	GGCC	1 cut(s)	152
HhaI	GCGC	1 cut(s)	445
Hin1II	CATG	1 cut(s)	254
Hin6I	GCGC	1 cut(s)	443
HinP1I	GCGC	1 cut(s)	443
HinfI	GANTC	1 cut(s)	434
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	5 cut(s)	96, 312, 326, 402, 477
Hpy188III	TCNNGA	5 cut(s)	251, 289, 438, 524, 566
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	311, 464
HpyCH4III	ACNGT	2 cut(s)	33, 606
HpyCH4V	TGCA	6 cut(s)	265, 333, 458, 616, 656, 698
HpyF10VI	GCNNNNNNNGC	9 cut(s)	158, 240, 395, 464, 493, 590, 622, 662, 671
HpyF3I	CTNAG	5 cut(s)	238, 309, 410, 585, 675
Hsp92II	CATG	1 cut(s)	254
HspAI	GCGC	1 cut(s)	443
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	214, 253
LmnI	GCTCC	2 cut(s)	15, 277
LpnPI	CCDG	8 cut(s)	5, 32, 225, 302, 350, 431, 622, 649
Lsp1109I	GCAGC	4 cut(s)	246, 370, 526, 628
LweI	GCATC	4 cut(s)	33, 235, 643, 661
MaeI	CTAG	1 cut(s)	464
MaeIII	GTNAC	2 cut(s)	271, 571
MalI	GATC	2 cut(s)	216, 255
MboI	GATC	2 cut(s)	214, 253
MboII	GAAGA	2 cut(s)	377, 428
MfeI	CAATTG	1 cut(s)	666
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	2 cut(s)	31, 282
MluCI	AATT	5 cut(s)	175, 284, 296, 666, 686
MmeI	TCCRAC	1 cut(s)	107
MnlI	CCTC	9 cut(s)	69, 128, 148, 163, 183, 311, 355, 461, 547
MroXI	GAANNNNTTC	1 cut(s)	296
MseI	TTAA	1 cut(s)	689
MslI	CAYNNNNRTG	1 cut(s)	71
MspR9I	CCNGG	2 cut(s)	20, 637
MunI	CAATTG	1 cut(s)	666
MvaI	CCWGG	2 cut(s)	20, 637
MwoI	GCNNNNNNNGC	9 cut(s)	158, 240, 395, 464, 493, 590, 622, 662, 671
NdeII	GATC	2 cut(s)	214, 253
NheI	GCTAGC	1 cut(s)	463
NlaIII	CATG	1 cut(s)	254
NlaIV	GGNNCC	1 cut(s)	17
NmeAIII	GCCGAG	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	271
NspV	TTCGAA	1 cut(s)	179
PagI	TCATGA	1 cut(s)	250
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	434
PkrI	GCNGC	7 cut(s)	60, 160, 236, 385, 388, 516, 618
PpuMI	RGGWCCY	1 cut(s)	448
Psp124BI	GAGCTC	1 cut(s)	282
Psp5II	RGGWCCY	1 cut(s)	448
Psp6I	CCWGG	2 cut(s)	18, 635
PspGI	CCWGG	2 cut(s)	18, 635
PspN4I	GGNNCC	1 cut(s)	17
PspPI	GGNCC	1 cut(s)	448
PspPPI	RGGWCCY	1 cut(s)	448
PsuI	RGATCY	1 cut(s)	214
RsaI	GTAC	2 cut(s)	5, 84
RsaNI	GTAC	2 cut(s)	4, 83
RseI	CAYNNNNRTG	1 cut(s)	71
SacI	GAGCTC	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	689
SatI	GCNGC	7 cut(s)	59, 159, 235, 384, 387, 515, 617
Sau3AI	GATC	2 cut(s)	214, 253
Sau96I	GGNCC	1 cut(s)	448
ScrFI	CCNGG	2 cut(s)	20, 637
SduI	GDGCHC	2 cut(s)	31, 282
SfaNI	GCATC	4 cut(s)	33, 235, 643, 661
SfuI	TTCGAA	1 cut(s)	179
SinI	GGWCC	1 cut(s)	448
SmiMI	CAYNNNNRTG	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	5 cut(s)	175, 284, 296, 666, 686
SsiI	CCGC	7 cut(s)	13, 46, 59, 141, 158, 185, 386
SspMI	CTAG	1 cut(s)	464
SstI	GAGCTC	1 cut(s)	282
StyD4I	CCNGG	2 cut(s)	18, 635
TaaI	ACNGT	2 cut(s)	33, 606
TaqI	TCGA	2 cut(s)	179, 559
TasI	AATT	5 cut(s)	175, 284, 296, 666, 686
TatI	WGTACW	2 cut(s)	3, 82
TauI	GCSGC	3 cut(s)	61, 161, 389
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	1 cut(s)	689
Tru9I	TTAA	1 cut(s)	689
TscAI	CASTG	1 cut(s)	663
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	4 cut(s)	234, 383, 514, 616
Tsp45I	GTSAC	1 cut(s)	271
TspGWI	ACGGA	2 cut(s)	210, 290
TspRI	CASTG	1 cut(s)	663
VpaK11BI	GGWCC	1 cut(s)	448
XapI	RAATTY	2 cut(s)	284, 296
XmnI	GAANNNNTTC	1 cut(s)	296
XspI	CTAG	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.