Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001628

Physical Location & Seq

Genomic Coordinates Forward (+)

5236073 .. 5236417

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0067300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAAGATGTGTCTTGGAGTTGATGTAGAAATCCATGATATTGAAACCGGCACGCTACCAACAACTCTACCACAACCACCACAAGCAATATTGCAGCAACCGAAGCAGCAGAAGGCCCAAAGGGTTGAATCTTATGAAATTTTTTGTCACCGAAAGGATGTGGAAGCTGTTGGATTTCACAGCGGAGAGTGTGTTATTTGTCTGGGAGAGTTTGAAGAAGACGACGAGTGCGCGATGCTCAAGAAATGTAAGCACACGTACCACCGTGACTGCATTGATAAGGTGAAAGAAGATTCGTGTCCGCTTTGTCGTCATAGTATCGATGTGAAAATAGAAAAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005794 GO:0005802 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0031984 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048193 GO:0048285 GO:0051179 GO:0051234 GO:0051321 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098791 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRIP

Protein Analysis

114

Amino Acids

13.04

Weight (kDa)

5.46

Isoelectric Point (pI)

66.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	63 - 104	2.3e-11	Ring finger domain
zf-RING_11	PF17123	63 - 92	6.9e-09	RING-like zinc finger
zf-RING_5	PF14634	63 - 105	1.6e-07	zinc-RING finger domain
zf-C3HC4_2	PF13923	63 - 103	1.3e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66030 AT5G66030 AT5G66030 AT5G66030
fragaria_vesca	FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521
malus_domestica	MD02G1119300.v1.1 MD15G1233300.v1.1
prunus_persica	Prupe.7G179600_v2.0.a1 Prupe.7G179600_v2.0.a1
pyrus_communis	pycom02g09300 pycom05g12530 pycom15g20780
rosa_chinensis	RchiOBHm_Chr2g0097451 RchiOBHm_Chr2g0097461 RchiOBHm_Chr2g0097561 RchiOBHm_Chr2g0097581 RchiOBHm_Chr6g0253501
rosa_laevigata	RLG00000007707 RLG00000016726
rosa_multiflora	Rmu_sc0003151.1_g000017 Rmu_sc0005929.1_g000013 Rmu_sc0009080.1_g000004 Rmu_sc0023738.1_g000001 Rmu_sc0023972.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144680 Rroxscaffold_4G00289770
rosa_rugosa	Rorug02G0067100 Rorug02G0067200 Rorug02G0067300 Rorug02G0067400 Rorug05G0050700
rosa_samantha	Rh2AG113500 Rh2BG116600 Rh2CG118600 Rh2DG117600 Rh3AG216100 Rh3BG375000 Rh3CG269100 Rh3DG243100 Rh4BG210200 Rh4BG210300
rosa_wichuraiana	Rw2G008900 Rw2G019040 Rw3G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	233
AciI	CCGC	2 cut(s)	183, 302
AcsI	RAATTY	1 cut(s)	138
AfaI	GTAC	1 cut(s)	260
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	3 cut(s)	44, 128, 215
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	2 cut(s)	94, 106
ApoI	RAATTY	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	2 cut(s)	140, 295
BbsI	GAAGAC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	106, 118
BfaI	CTAG	1 cut(s)	343
BisI	GCNGC	2 cut(s)	95, 107
BlsI	GCNGC	2 cut(s)	96, 108
BmgT120I	GGNCC	1 cut(s)	115
BmsI	GCATC	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	224
Bsa29I	ATCGAT	1 cut(s)	321
BsaAI	YACGTR	1 cut(s)	258
BsaXI	ACNNNNNCTCC	4 cut(s)	9, 39, 177, 207
Bse118I	RCCGGY	1 cut(s)	47
BseCI	ATCGAT	1 cut(s)	321
BseGI	GGATG	1 cut(s)	163
BseXI	GCAGC	2 cut(s)	106, 118
Bsh1236I	CGCG	1 cut(s)	233
BshFI	GGCC	1 cut(s)	116
BshVI	ATCGAT	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	48
BsnI	GGCC	1 cut(s)	116
BspACI	CCGC	2 cut(s)	183, 302
BspANI	GGCC	1 cut(s)	116
BspDI	ATCGAT	1 cut(s)	321
BspFNI	CGCG	1 cut(s)	233
BsrFI	RCCGGY	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	266
BstBAI	YACGTR	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	163
BstFNI	CGCG	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	233
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstUI	CGCG	1 cut(s)	233
BstV1I	GCAGC	2 cut(s)	106, 118
BstV2I	GAAGAC	1 cut(s)	225
Bsu15I	ATCGAT	1 cut(s)	321
BsuRI	GGCC	1 cut(s)	116
BsuTUI	ATCGAT	1 cut(s)	321
BtgZI	GCGATG	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	163
Cac8I	GCNNGC	1 cut(s)	53
CfoI	GCGC	1 cut(s)	233
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	115
ClaI	ATCGAT	1 cut(s)	321
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	1 cut(s)	35
CviJI	RGCY	2 cut(s)	116, 167
CviKI_1	RGCY	2 cut(s)	116, 167
CviQI	GTAC	1 cut(s)	259
FaeI	CATG	1 cut(s)	38
FaiI	YATR	3 cut(s)	36, 135, 315
FatI	CATG	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	95, 107
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	2 cut(s)	95, 107
FspBI	CTAG	1 cut(s)	343
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	2 cut(s)	95, 107
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	1 cut(s)	48
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	1 cut(s)	38
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	2 cut(s)	128, 293
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	2 cut(s)	140, 295
Hpy188III	TCNNGA	1 cut(s)	241
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	257
HpyCH4V	TGCA	2 cut(s)	94, 273
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
HpySE526I	ACGT	1 cut(s)	257
Hsp92II	CATG	1 cut(s)	38
HspAI	GCGC	1 cut(s)	231
LpnPI	CCDG	2 cut(s)	61, 188
Lsp1109I	GCAGC	2 cut(s)	106, 118
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	1 cut(s)	343
MaeII	ACGT	1 cut(s)	257
MaeIII	GTNAC	2 cut(s)	146, 266
MboII	GAAGA	4 cut(s)	16, 227, 230, 302
MluCI	AATT	1 cut(s)	138
MmeI	TCCRAC	1 cut(s)	151
MspA1I	CMGCKG	1 cut(s)	183
MspI	CCGG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	103
NlaIII	CATG	1 cut(s)	38
NmuCI	GTSAC	2 cut(s)	146, 266
PfeI	GAWTC	2 cut(s)	128, 293
PkrI	GCNGC	2 cut(s)	96, 108
Ppu21I	YACGTR	1 cut(s)	258
PspPI	GGNCC	1 cut(s)	115
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SatI	GCNGC	2 cut(s)	95, 107
Sau96I	GGNCC	1 cut(s)	115
SetI	ASST	3 cut(s)	169, 260, 285
SfaNI	GCATC	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	1 cut(s)	138
SsiI	CCGC	2 cut(s)	183, 302
SspI	AATATT	1 cut(s)	90
SspMI	CTAG	1 cut(s)	343
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	1 cut(s)	260
TaqI	TCGA	1 cut(s)	321
TasI	AATT	1 cut(s)	138
TfiI	GAWTC	2 cut(s)	128, 293
TseFI	GTSAC	2 cut(s)	146, 266
TseI	GCWGC	2 cut(s)	94, 106
Tsp45I	GTSAC	2 cut(s)	146, 266
TspDTI	ATGAA	2 cut(s)	17, 150
XapI	RAATTY	1 cut(s)	138
XspI	CTAG	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.