Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023738.1

Orthogroup ID

OG0001628

Physical Location & Seq

Genomic Coordinates Reverse (-)

1014 .. 1848

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023738.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

atgttgaagactgagcttcgcaacatggaaagatcacagaagagggaaggagtagatatgacttacctcaaaaatgttatattaaagcttcttgaaactggtgaagtggaggctctattacctgtggttggtatgctccttcagtttagtcctgaagagatccagaagtgtcaacaagcataccgcgcatctgtagatgtccctcctagcgcagcaagtgatgcttcaggatctgccacctcctcgcttttctcaagattctcattcacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005794 GO:0005802 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0031984 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048193 GO:0048285 GO:0051179 GO:0051234 GO:0051321 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098791 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRIP

Protein Analysis

90

Amino Acids

9.97

Weight (kDa)

5.36

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66030 AT5G66030 AT5G66030 AT5G66030
fragaria_vesca	FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521
malus_domestica	MD02G1119300.v1.1 MD15G1233300.v1.1
prunus_persica	Prupe.7G179600_v2.0.a1 Prupe.7G179600_v2.0.a1
pyrus_communis	pycom02g09300 pycom05g12530 pycom15g20780
rosa_chinensis	RchiOBHm_Chr2g0097451 RchiOBHm_Chr2g0097461 RchiOBHm_Chr2g0097561 RchiOBHm_Chr2g0097581 RchiOBHm_Chr6g0253501
rosa_laevigata	RLG00000007707 RLG00000016726
rosa_multiflora	Rmu_sc0003151.1_g000017 Rmu_sc0005929.1_g000013 Rmu_sc0009080.1_g000004 Rmu_sc0023738.1_g000001 Rmu_sc0023972.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144680 Rroxscaffold_4G00289770
rosa_rugosa	Rorug02G0067100 Rorug02G0067200 Rorug02G0067300 Rorug02G0067400 Rorug05G0050700
rosa_samantha	Rh2AG113500 Rh2BG116600 Rh2CG118600 Rh2DG117600 Rh3AG216100 Rh3BG375000 Rh3CG269100 Rh3DG243100 Rh4BG210200 Rh4BG210300
rosa_wichuraiana	Rw2G008900 Rw2G019040 Rw3G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	186
AciI	CCGC	1 cut(s)	184
AclWI	GGATC	2 cut(s)	154, 238
AcuI	CTGAAG	3 cut(s)	125, 174, 210
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgsI	TTSAA	2 cut(s)	7, 95
AluBI	AGCT	2 cut(s)	16, 88
AluI	AGCT	2 cut(s)	16, 88
AlwI	GGATC	2 cut(s)	154, 238
AlwNI	CAGNNNCTG	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	212
AspLEI	GCGC	2 cut(s)	188, 212
AsuHPI	GGTGA	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	224
BfaI	CTAG	1 cut(s)	207
BfmI	CTRYAG	1 cut(s)	192
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
BmsI	GCATC	2 cut(s)	197, 211
BpiI	GAAGAC	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	103
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	103
BseRI	GAGGAG	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	224
Bsh1236I	CGCG	1 cut(s)	186
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	185
Bsp143I	GATC	3 cut(s)	32, 159, 230
BspACI	CCGC	1 cut(s)	184
BspCNI	CTCAG	1 cut(s)	4
BspFNI	CGCG	1 cut(s)	186
BspPI	GGATC	2 cut(s)	154, 238
BsrI	ACTGG	1 cut(s)	103
BssMI	GATC	3 cut(s)	32, 159, 230
Bst6I	CTCTTC	2 cut(s)	35, 150
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstDEI	CTNAG	1 cut(s)	12
BstFNI	CGCG	1 cut(s)	186
BstHHI	GCGC	2 cut(s)	188, 212
BstKTI	GATC	3 cut(s)	35, 162, 233
BstMBI	GATC	3 cut(s)	32, 159, 230
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 221
BstSFI	CTRYAG	1 cut(s)	192
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	224
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	2 cut(s)	159, 230
BstYI	RGATCY	2 cut(s)	159, 230
CaiI	CAGNNNCTG	1 cut(s)	233
CfoI	GCGC	2 cut(s)	188, 212
CviAII	CATG	1 cut(s)	25
CviJI	RGCY	3 cut(s)	16, 88, 113
CviKI_1	RGCY	3 cut(s)	16, 88, 113
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	3 cut(s)	34, 161, 232
DpnII	GATC	3 cut(s)	32, 159, 230
Eam1104I	CTCTTC	2 cut(s)	35, 150
EarI	CTCTTC	2 cut(s)	35, 150
Eco57I	CTGAAG	3 cut(s)	125, 174, 210
FaeI	CATG	1 cut(s)	28
FaiI	YATR	5 cut(s)	26, 59, 80, 134, 181
FalI	AAGNNNNNCTT	2 cut(s)	208, 240
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	1 cut(s)	24
Fnu4HI	GCNGC	1 cut(s)	213
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	1 cut(s)	207
GlaI	GCGC	2 cut(s)	187, 211
GluI	GCNGC	1 cut(s)	213
HhaI	GCGC	2 cut(s)	188, 212
Hin1II	CATG	1 cut(s)	28
Hin6I	GCGC	2 cut(s)	186, 210
HinP1I	GCGC	2 cut(s)	186, 210
HincII	GTYRAC	1 cut(s)	173
HindII	GTYRAC	1 cut(s)	173
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	1 cut(s)	258
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188III	TCNNGA	5 cut(s)	92, 152, 163, 228, 255
Hpy8I	GTNNAC	1 cut(s)	173
HpyAV	CCTTC	2 cut(s)	41, 149
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 221
HpyF3I	CTNAG	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	28
HspAI	GCGC	2 cut(s)	186, 210
Kzo9I	GATC	3 cut(s)	32, 159, 230
LmnI	GCTCC	1 cut(s)	141
LpnPI	CCDG	5 cut(s)	84, 135, 165, 176, 213
Lsp1109I	GCAGC	1 cut(s)	224
LweI	GCATC	2 cut(s)	197, 211
MaeI	CTAG	1 cut(s)	207
MalI	GATC	3 cut(s)	34, 161, 232
MboI	GATC	3 cut(s)	32, 159, 230
MboII	GAAGA	3 cut(s)	19, 52, 167
MflI	RGATCY	2 cut(s)	159, 230
MnlI	CCTC	6 cut(s)	36, 77, 103, 213, 250, 253
MseI	TTAA	2 cut(s)	83, 271
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	2 cut(s)	185, 221
NdeII	GATC	3 cut(s)	32, 159, 230
NlaIII	CATG	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	258
PkrI	GCNGC	1 cut(s)	214
PstNI	CAGNNNCTG	1 cut(s)	233
PsuI	RGATCY	2 cut(s)	159, 230
SaqAI	TTAA	2 cut(s)	83, 271
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	3 cut(s)	32, 159, 230
SetI	ASST	5 cut(s)	18, 69, 90, 124, 242
SfaNI	GCATC	2 cut(s)	197, 211
SfcI	CTRYAG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
SsiI	CCGC	1 cut(s)	184
SspMI	CTAG	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	258
Tru1I	TTAA	2 cut(s)	83, 271
Tru9I	TTAA	2 cut(s)	83, 271
TseI	GCWGC	1 cut(s)	212
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.