Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001628

Physical Location & Seq

Genomic Coordinates Forward (+)

82600886 .. 82612257

Gene Structure 11372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00144680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3153 bp

ATGGATATATTCACTGATGTAATGATGCATGACAGAGACATTCAGCGATCTGCTCGGCTAGACGTGCAGGCAAGTATTAAAATACTGTTTGCTCAGGCGTTTAAAGAACGTGATCCAGCTTGTTTGTCTTACTGTTCGGCTCTATTGTATCTCAAGGGTTACCATGCTCTGCAAGTATATCGAGTAGCTCATTCACTGTGGAGTCAAGGACGCAAAGTATTGGCCTTGGCATTACAAAGCCGAGTTAGCGAGGTGTTTGGAGTGGACATTCACCCTGCTTCAAAAATTGGAGAGGGAGTATTGTTGGATCATGGTACGGGTGTGGTTATTGGGGAAACTGCTGTTATAGGAAACAGAGGTGTAACTTTGGGAGGAACTGGGAAAGAAATTGGTGACCGTCATCCAAAAATAGGTGAAGGTGCACTAATAGGAGCCAGTGCAACTATACTTGGGAATATAAAAATAGATGCTACCAAAGAATTTTTTGAAAATGTAGCTGTTAAGTTCAGAGATGCAAGGTCTGCTGCAGAAGATGACATACTGTATCACAGCTTGTATCATAGAATTTCATTAACCATTATCACTCTTCTGCTATCTCTGCTGATTGAGGTTCTCATGCCAGAGGTTCGCCGGACCGACACCACCGGCGATCTCTCTATCTCGGCGGTGAAGAGCTTCCGTTTGCTTGACGGATCCTCATCCTCCAGCTCCCCCGAAAGGTACACATTCATTTGCTTCAAATTGATCCGACGAGATCCGCGAATTGATTATCGGATTGAATTTGTGTGTCGCTCAGCCTCAGGTACGAGTTGGATTGGAGGAAGCGGAACAATGGCCGAAGAGACCGAGGCGGCTCAAATGGAGGACAATTCGAAACCGCAGAGGCACGGAAGCGATAGCAATGGAGATCTCGCATTGGAGAATGGCAGCTCAGGCGATGCTCATGATCAGCTTGTGCAGATGGTCACGGAGCTCAAATTCCAGAACGAATTCCTCAAGTCTCAGATTGAAGGCTTTCAGAGTTTGCAACCAGCAGAACCGAGTGAAGGCGGTGGTTCCGAAGAGGTTGAACGGCTCCGGCAGAGCATTGAGTCATTGAATTCGCAGCTTGAGGAAGAGAAGCAAACACGAGCTGCGGCAGAAAAGGCTCTGAAGCACCTTAGAGAAGAACACTTGGAAGCTGATTCAAGAGCGCAGGACCTCTCTGCAAAGCTAGCTGAAGCTCAACAGAAGTTGGATCAAGAAATTAAAGAGCGTGAAGAGAAGTACTCTGATCTTGACTCGAAATTCACCAGGCTTCACAAACGAGCAAAGCAGCGTATTCAAGATGTTCAAAAGGAAAAAGATGACATTGAGGCTCGATTTCGTGAAGTAAATGAAAGAGCTGAGCGAGCATTATCCCAACAGTCAGCATTGCAGCAAGAGCTTGACAAAACCAGGCAACAAGCAAACGATGCACTGAAAGCAATTGATGCTGAGAGACAACAATTAAGAAGTGCAAATAATAAACTACGAGACAACCTGGAGGAATTGCGAAATGCATTGCAACCAAAAGAGAGTGCTATCGAGGCACTGCAACATACAATTTCGGAGAAGGATCAGATGTTAGAAGATATGCGAGGTTTGCTTCAGGCTGCTGAGGAAAAAAGGCAAGCTTCATTAGCTGAACTCTCTGCTAAACATCAGAAGAATTTGGAGAGTTTGGAAGCGCAACTTGCGGATGCATCATCCGATAGAAATAAAGCAACTGAAACTATTTCTTCACTGCAGATGCTAGTTGCTGAGAAAGAGTCAAAGATTGCAGAGATGGAAGCGGCATCAACGGGTGAGGCAGCAAGACTTAGAGCTGCTGCAGAAACTGTAAAAGGAGAGCTTGCTCACCTTAAACATGAGCATGAGAAAGAAAAGGAGAGCTGGGAAGCTGCCTCTCGGGGACTGAAAACAAAGCTGGAAGTCGCTGAGAGCAATCGGATATGTGCTGAAATTGAAGTAGCCAAAATGAGAAGTCAGCTGGAATCAGAGGTGTCTGCACAAACCCGAATGCTTGATGCAAGAGATGCTGAACTTGCAACTGCCAAGGAGGAGATCAACCGCCTTAAAAATGAATTTTCTTCCTACAAAGTACGTGCTCATGCACTTCTCCAAAAGAAGGATGCAGATCTAGCTGCAGCTAAAGACTCTGAACAAGTTACAGCTCTTGAGGAAGCACTAAAAGAAGCTGAAAAAGAAGTTTCATCTCTGAGTGCTGAAAGAGATAAGGCCCTTCAGGATCTTCAGGATGCCTTGACTAATTATAATAAAGAACTAGCAGAAAGAGATGCAGCTCTTAACGATACCATGCAGCAGATCAAGAGCTTAGAAAAAAAGCTCGAGTCTACTAATGCCCATCACCGATCCGCCAAAGAAGCATGGGAAGTTAACCTTAGTAATTTGGAAGAAACATGGCGGGCAAGATGTGAAACATTAAGAGCTCAAAATGAAGCATCTTCTGGAGAAGACATAAAAAAAGAATTGGAAGAGCTCAAATTACGGTATAAAAAATTGAAGGAAGAACACAGTTCATATCGTGATCTTGCTGATAGAATGATGGAGGAGAAGGACAAAGAAATTTCTAGACTTGTAGATGATAATAAGAACCTTCATCAATCTTTGGAGTCAAGACCAAAGGTTGATCATAACGATAATTATAGCACAGGCATGCATAAACAGGATCCATCAAGTTTAAGCACCTCTGCATTAGAACAGCAGATTCTGATTCTGGCAAGGCAACAAGCGCAAAGAGAGGAAGAGCTAGCACAGTCACAGAGGCACATTTTAGCGCTTCAAGAGGAAATTGAGGAGCTGGAGCATGAAAATCGTCTGCATAGCCAACAGGAAACAATGTTGAAGACTGAGCTTCGCAACATGGAAAGATCACAGAAGAGGGAAGGAGTAGATATGACTTACCTCAAAAATGTTATATTAAAGCTTCTTGAAACTGGTGAAGTGGAGGCTCTATTACCTGTGGTTGGTATGCTCCTTCAGTTTAGTCCTGAAGAGATCCAGAAGTGTCAACAAGCATACCGCGCATCTGTAGATGTCCCTCCTAGCCCAGCAAGTGATGCTTCAGGATCTGCTGCCACCTCTCTTTTCTCAAGATTCTCATTCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005794 GO:0005802 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0031984 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048193 GO:0048285 GO:0051179 GO:0051234 GO:0051321 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098791 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRIP

Protein Analysis

1050

Amino Acids

118.06

Weight (kDa)

5.34

Isoelectric Point (pI)

51.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SATase_N	PF06426	2 - 58	6.3e-10	Serine acetyltransferase, N-terminal
GRIP	PF01465	977 - 1017	1.5e-12	GRIP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66030 AT5G66030 AT5G66030 AT5G66030
fragaria_vesca	FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521
malus_domestica	MD02G1119300.v1.1 MD15G1233300.v1.1
prunus_persica	Prupe.7G179600_v2.0.a1 Prupe.7G179600_v2.0.a1
pyrus_communis	pycom02g09300 pycom05g12530 pycom15g20780
rosa_chinensis	RchiOBHm_Chr2g0097451 RchiOBHm_Chr2g0097461 RchiOBHm_Chr2g0097561 RchiOBHm_Chr2g0097581 RchiOBHm_Chr6g0253501
rosa_laevigata	RLG00000007707 RLG00000016726
rosa_multiflora	Rmu_sc0003151.1_g000017 Rmu_sc0005929.1_g000013 Rmu_sc0009080.1_g000004 Rmu_sc0023738.1_g000001 Rmu_sc0023972.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144680 Rroxscaffold_4G00289770
rosa_rugosa	Rorug02G0067100 Rorug02G0067200 Rorug02G0067300 Rorug02G0067400 Rorug05G0050700
rosa_samantha	Rh2AG113500 Rh2BG116600 Rh2CG118600 Rh2DG117600 Rh3AG216100 Rh3BG375000 Rh3CG269100 Rh3DG243100 Rh4BG210200 Rh4BG210300
rosa_wichuraiana	Rw2G008900 Rw2G019040 Rw3G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2295
AccI	GTMKAC	1 cut(s)	2375
AccII	CGCG	2 cut(s)	760, 3066
AcoI	YGGCCR	1 cut(s)	834
AcuI	CTGAAG	8 cut(s)	1172, 1239, 1613, 2249, 2258, 3005, 3054, 3090
AfaI	GTAC	5 cut(s)	316, 722, 805, 1268, 2124
AfeI	AGCGCT	1 cut(s)	2820
AfiI	CCNNNNNNNGG	5 cut(s)	410, 717, 1046, 2149, 3008
AjiI	CACGTC	1 cut(s)	64
AjnI	CCWGG	3 cut(s)	1292, 1436, 1521
Alw21I	GWGCWC	5 cut(s)	424, 975, 2131, 2473, 2523
Alw26I	GTCTC	5 cut(s)	30, 836, 1005, 1474, 1509
Alw44I	GTGCAC	1 cut(s)	420
AlwNI	CAGNNNCTG	3 cut(s)	1859, 2752, 3113
Ama87I	CYCGRG	2 cut(s)	1929, 2369
Aor51HI	AGCGCT	1 cut(s)	2820
AoxI	GGCC	3 cut(s)	222, 834, 2259
ApaLI	GTGCAC	1 cut(s)	420
Asp700I	GAANNNNTTC	3 cut(s)	674, 989, 1014
AspLEI	GCGC	5 cut(s)	1195, 1711, 2776, 2821, 3068
AspS9I	GGNCC	3 cut(s)	633, 1198, 2260
AsuHPI	GGTGA	9 cut(s)	263, 404, 425, 679, 1282, 1838, 1871, 2381, 2993
AsuII	TTCGAA	1 cut(s)	872
AsuNHI	GCTAGC	2 cut(s)	1213, 2791
AvaI	CYCGRG	2 cut(s)	1929, 2369
AvaII	GGWCC	2 cut(s)	633, 1198
AxyI	CCTNAGG	1 cut(s)	799
BaeGI	GKGCMC	1 cut(s)	424
BaeI	ACNNNNGTAYC	2 cut(s)	306, 339
BamHI	GGATCC	2 cut(s)	692, 2710
BanII	GRGCYC	3 cut(s)	975, 2473, 2523
BarI	GAAGNNNNNNTAC	2 cut(s)	522, 554
BauI	CACGAG	1 cut(s)	1128
BbsI	GAAGAC	2 cut(s)	2502, 2894
Bbv12I	GWGCWC	5 cut(s)	424, 975, 2131, 2473, 2523
BbvCI	CCTCAGC	1 cut(s)	1638
BccI	CCATC	5 cut(s)	955, 1801, 2394, 2581, 2722
BceAI	ACGGC	1 cut(s)	1088
BcgI	CGANNNNNNTGC	4 cut(s)	161, 195, 2837, 2871
BciT130I	CCWGG	3 cut(s)	1294, 1438, 1523
BclI	TGATCA	2 cut(s)	946, 2671
BcoDI	GTCTC	5 cut(s)	30, 836, 1005, 1474, 1509
BfaI	CTAG	8 cut(s)	59, 1214, 1775, 2162, 2306, 2613, 2792, 3087
BfmI	CTRYAG	5 cut(s)	525, 1766, 1851, 2166, 3072
BfoI	RGCGCY	1 cut(s)	2822
BglII	AGATCT	2 cut(s)	907, 2158
BlpI	GCTNAGC	2 cut(s)	793, 1386
BmcAI	AGTACT	1 cut(s)	1268
Bme1390I	CCNGG	3 cut(s)	1294, 1438, 1523
Bme18I	GGWCC	2 cut(s)	633, 1198
BmeT110I	CYCGRG	2 cut(s)	1929, 2369
BmgBI	CACGTC	1 cut(s)	64
BmgT120I	GGNCC	3 cut(s)	633, 1198, 2260
BmiI	GGNNCC	5 cut(s)	433, 694, 1057, 1076, 2712
BmrFI	CCNGG	3 cut(s)	1294, 1438, 1523
BmrI	ACTGGG	1 cut(s)	387
BmtI	GCTAGC	2 cut(s)	1217, 2795
BmuI	ACTGGG	1 cut(s)	387
BpiI	GAAGAC	2 cut(s)	2502, 2894
BplI	GAGNNNNNCTC	2 cut(s)	1253, 1285
BpmI	CTGGAG	4 cut(s)	688, 1544, 2511, 2864
Bpu10I	CCTNAGC	3 cut(s)	93, 931, 1638
Bpu1102I	GCTNAGC	2 cut(s)	793, 1386
Bpu14I	TTCGAA	1 cut(s)	872
BpuEI	CTTGAG	5 cut(s)	137, 980, 1130, 2219, 3118
BsaAI	YACGTR	1 cut(s)	2126
BsaBI	GATNNNNATC	2 cut(s)	697, 2157
BsaI	GGTCTC	1 cut(s)	836
BsaJI	CCNNGG	3 cut(s)	225, 846, 2076
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	5 cut(s)	410, 717, 1046, 2149, 3008
Bse118I	RCCGGY	1 cut(s)	644
Bse1I	ACTGG	3 cut(s)	382, 435, 2983
Bse21I	CCTNAGG	1 cut(s)	799
Bse3DI	GCAATG	3 cut(s)	907, 1412, 1541
Bse8I	GATNNNNATC	2 cut(s)	697, 2157
BseBI	CCWGG	3 cut(s)	1294, 1438, 1523
BseDI	CCNNGG	3 cut(s)	225, 846, 2076
BseGI	GGATG	6 cut(s)	400, 698, 1726, 1727, 2158, 2284
BseJI	GATNNNNATC	2 cut(s)	697, 2157
BseLI	CCNNNNNNNGG	5 cut(s)	410, 717, 1046, 2149, 3008
BseMI	GCAATG	3 cut(s)	907, 1412, 1541
BseNI	ACTGG	3 cut(s)	382, 435, 2983
BseRI	GAGGAG	3 cut(s)	2096, 2606, 2852
BseSI	GKGCMC	1 cut(s)	424
BseYI	CCCAGC	2 cut(s)	1914, 3091
BsgI	GTGCAG	3 cut(s)	86, 977, 2013
Bsh1236I	CGCG	2 cut(s)	760, 3066
BshFI	GGCC	3 cut(s)	224, 836, 2261
BsiHKAI	GWGCWC	5 cut(s)	424, 975, 2131, 2473, 2523
BsiHKCI	CYCGRG	2 cut(s)	1929, 2369
BsiSI	CCGG	3 cut(s)	631, 645, 1078
BslFI	GGGAC	2 cut(s)	1947, 3065
BslI	CCNNNNNNNGG	5 cut(s)	410, 717, 1046, 2149, 3008
BsmAI	GTCTC	5 cut(s)	30, 836, 1005, 1474, 1509
BsmFI	GGGAC	2 cut(s)	1947, 3065
BsmI	GAATGC	1 cut(s)	2046
BsnI	GGCC	3 cut(s)	224, 836, 2261
Bso31I	GGTCTC	1 cut(s)	836
BsoBI	CYCGRG	2 cut(s)	1929, 2369
Bsp119I	TTCGAA	1 cut(s)	872
Bsp1286I	GDGCHC	5 cut(s)	424, 975, 2131, 2473, 2523
Bsp1720I	GCTNAGC	2 cut(s)	793, 1386
BspANI	GGCC	3 cut(s)	224, 836, 2261
BspFNI	CGCG	2 cut(s)	760, 3066
BspHI	TCATGA	1 cut(s)	943
BspLI	GGNNCC	5 cut(s)	433, 694, 1057, 1076, 2712
BspMAI	CTGCAG	4 cut(s)	529, 1770, 1855, 2170
BspOI	GCTAGC	2 cut(s)	1217, 2795
BspQI	GCTCTTC	3 cut(s)	665, 2511, 2781
BspT104I	TTCGAA	1 cut(s)	872
BspTNI	GGTCTC	1 cut(s)	836
BsrDI	GCAATG	3 cut(s)	907, 1412, 1541
BsrFI	RCCGGY	1 cut(s)	644
BsrI	ACTGG	3 cut(s)	382, 435, 2983
BssAI	RCCGGY	1 cut(s)	644
BssECI	CCNNGG	3 cut(s)	225, 846, 2076
BssSI	CACGAG	1 cut(s)	1128
BssT1I	CCWWGG	2 cut(s)	225, 2076
Bst2BI	CACGAG	1 cut(s)	1128
Bst2UI	CCWGG	3 cut(s)	1294, 1438, 1523
BstAPI	GCANNNNNTGC	5 cut(s)	521, 1454, 1472, 2057, 3101
BstBAI	YACGTR	1 cut(s)	2126
BstBI	TTCGAA	1 cut(s)	872
BstC8I	GCNNGC	8 cut(s)	69, 1215, 1392, 1653, 1875, 2448, 2699, 2793
BstEII	GGTNACC	2 cut(s)	158, 392
BstF5I	GGATG	6 cut(s)	400, 698, 1726, 1727, 2158, 2284
BstFNI	CGCG	2 cut(s)	760, 3066
BstH2I	RGCGCY	1 cut(s)	2822
BstHHI	GCGC	5 cut(s)	1195, 1711, 2776, 2821, 3068
BstMAI	GTCTC	5 cut(s)	30, 836, 1005, 1474, 1509
BstNI	CCWGG	3 cut(s)	1294, 1438, 1523
BstNSI	RCATGY	1 cut(s)	2701
BstPI	GGTNACC	2 cut(s)	158, 392
BstSCI	CCNGG	3 cut(s)	1292, 1436, 1521
BstSFI	CTRYAG	5 cut(s)	525, 1766, 1851, 2166, 3072
BstSLI	GKGCMC	1 cut(s)	424
BstUI	CGCG	2 cut(s)	760, 3066
BstV2I	GAAGAC	2 cut(s)	2502, 2894
BstX2I	RGATCY	8 cut(s)	692, 754, 907, 2158, 2269, 2710, 3039, 3110
BstYI	RGATCY	8 cut(s)	692, 754, 907, 2158, 2269, 2710, 3039, 3110
Bsu36I	CCTNAGG	1 cut(s)	799
BsuRI	GGCC	3 cut(s)	224, 836, 2261
BtgZI	GCGATG	1 cut(s)	951
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	6 cut(s)	400, 698, 1726, 1727, 2158, 2284
BtsI	GCAGTG	2 cut(s)	1571, 1763
BtsIMutI	CAGTG	6 cut(s)	12, 194, 442, 1457, 1571, 1763
Cac8I	GCNNGC	8 cut(s)	69, 1215, 1392, 1653, 1875, 2448, 2699, 2793
CaiI	CAGNNNCTG	3 cut(s)	1859, 2752, 3113
CciI	TCATGA	1 cut(s)	943
CfoI	GCGC	5 cut(s)	1195, 1711, 2776, 2821, 3068
Cfr10I	RCCGGY	1 cut(s)	644
Cfr13I	GGNCC	3 cut(s)	633, 1198, 2260
CpoI	CGGWCCG	1 cut(s)	633
CseI	GACGC	1 cut(s)	219
Csp6I	GTAC	5 cut(s)	315, 721, 804, 1267, 2123
CspI	CGGWCCG	1 cut(s)	633
CviQI	GTAC	5 cut(s)	315, 721, 804, 1267, 2123
DraI	TTTAAA	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	834
EciI	GGCGGA	1 cut(s)	2386
Ecl136II	GAGCTC	3 cut(s)	973, 2471, 2521
Eco130I	CCWWGG	2 cut(s)	225, 2076
Eco24I	GRGCYC	3 cut(s)	975, 2473, 2523
Eco31I	GGTCTC	1 cut(s)	836
Eco47I	GGWCC	2 cut(s)	633, 1198
Eco47III	AGCGCT	1 cut(s)	2820
Eco53kI	GAGCTC	3 cut(s)	973, 2471, 2521
Eco57I	CTGAAG	8 cut(s)	1172, 1239, 1613, 2249, 2258, 3005, 3054, 3090
Eco81I	CCTNAGG	1 cut(s)	799
Eco88I	CYCGRG	2 cut(s)	1929, 2369
Eco91I	GGTNACC	2 cut(s)	158, 392
EcoICRI	GAGCTC	3 cut(s)	973, 2471, 2521
EcoO109I	RGGNCCY	2 cut(s)	1198, 2260
EcoO65I	GGTNACC	2 cut(s)	158, 392
EcoRI	GAATTC	2 cut(s)	989, 1099
EcoRII	CCWGG	3 cut(s)	1292, 1436, 1521
EcoT14I	CCWWGG	2 cut(s)	225, 2076
EcoT22I	ATGCAT	4 cut(s)	30, 1543, 1726, 2703
EcoT38I	GRGCYC	3 cut(s)	975, 2473, 2523
ErhI	CCWWGG	2 cut(s)	225, 2076
FaqI	GGGAC	2 cut(s)	1947, 3065
FauI	CCCGC	1 cut(s)	2439
FbaI	TGATCA	2 cut(s)	946, 2671
FblI	GTMKAC	1 cut(s)	2375
FokI	GGATG	6 cut(s)	387, 685, 1714, 1733, 2165, 2291
FriOI	GRGCYC	3 cut(s)	975, 2473, 2523
FspBI	CTAG	8 cut(s)	59, 1214, 1775, 2162, 2306, 2613, 2792, 3087
GlaI	GCGC	5 cut(s)	1194, 1710, 2775, 2820, 3067
GsaI	CCCAGC	2 cut(s)	1918, 3095
GsuI	CTGGAG	4 cut(s)	688, 1544, 2511, 2864
HaeII	RGCGCY	1 cut(s)	2822
HaeIII	GGCC	3 cut(s)	224, 836, 2261
HapII	CCGG	3 cut(s)	631, 645, 1078
HgaI	GACGC	1 cut(s)	219
HhaI	GCGC	5 cut(s)	1195, 1711, 2776, 2821, 3068
Hin6I	GCGC	5 cut(s)	1193, 1709, 2774, 2819, 3066
HinP1I	GCGC	5 cut(s)	1193, 1709, 2774, 2819, 3066
HincII	GTYRAC	2 cut(s)	2419, 3053
HindII	GTYRAC	2 cut(s)	2419, 3053
HindIII	AAGCTT	2 cut(s)	1653, 2966
HpaI	GTTAAC	1 cut(s)	2419
HpaII	CCGG	3 cut(s)	631, 645, 1078
HphI	GGTGA	9 cut(s)	263, 404, 425, 679, 1282, 1838, 1871, 2381, 2993
Hpy166II	GTNNAC	6 cut(s)	265, 422, 723, 2376, 2419, 3053
Hpy8I	GTNNAC	6 cut(s)	265, 422, 723, 2376, 2419, 3053
Hpy99I	CGWCG	1 cut(s)	753
HpyCH4IV	ACGT	3 cut(s)	63, 109, 2125
HpySE526I	ACGT	3 cut(s)	63, 109, 2125
HspAI	GCGC	5 cut(s)	1193, 1709, 2774, 2819, 3066
Ksp22I	TGATCA	2 cut(s)	946, 2671
KspAI	GTTAAC	1 cut(s)	2419
LguI	GCTCTTC	3 cut(s)	665, 2511, 2781
LmnI	GCTCC	7 cut(s)	431, 713, 970, 1080, 2839, 2845, 3021
MaeI	CTAG	8 cut(s)	59, 1214, 1775, 2162, 2306, 2613, 2792, 3087
MaeII	ACGT	3 cut(s)	63, 109, 2125
MaeIII	GTNAC	6 cut(s)	158, 361, 392, 964, 2188, 2799
MfeI	CAATTG	1 cut(s)	1467
MflI	RGATCY	8 cut(s)	692, 754, 907, 2158, 2269, 2710, 3039, 3110
MhlI	GDGCHC	5 cut(s)	424, 975, 2131, 2473, 2523
MlyI	GAGTC	7 cut(s)	211, 1100, 1274, 1799, 2171, 2381, 2663
MmeI	TCCRAC	4 cut(s)	285, 772, 791, 1215
Mph1103I	ATGCAT	4 cut(s)	30, 1543, 1726, 2703
MroXI	GAANNNNTTC	3 cut(s)	674, 989, 1014
MslI	CAYNNNNRTG	2 cut(s)	1893, 2696
MspA1I	CMGCKG	1 cut(s)	2011
MspI	CCGG	3 cut(s)	631, 645, 1078
MspR9I	CCNGG	3 cut(s)	1294, 1438, 1523
MunI	CAATTG	1 cut(s)	1467
Mva1269I	GAATGC	1 cut(s)	2046
MvaI	CCWGG	3 cut(s)	1294, 1438, 1523
MvnI	CGCG	2 cut(s)	760, 3066
NheI	GCTAGC	2 cut(s)	1213, 2791
NlaIV	GGNNCC	5 cut(s)	433, 694, 1057, 1076, 2712
NmeAIII	GCCGAG	3 cut(s)	34, 266, 641
NmuCI	GTSAC	3 cut(s)	392, 964, 2799
NsiI	ATGCAT	4 cut(s)	30, 1543, 1726, 2703
NspI	RCATGY	1 cut(s)	2701
NspV	TTCGAA	1 cut(s)	872
PaeI	GCATGC	1 cut(s)	2701
PaeR7I	CTCGAG	1 cut(s)	2369
PagI	TCATGA	1 cut(s)	943
PciSI	GCTCTTC	3 cut(s)	665, 2511, 2781
PcsI	WCGNNNNNNNCGW	1 cut(s)	757
PctI	GAATGC	1 cut(s)	2046
PdmI	GAANNNNTTC	3 cut(s)	674, 989, 1014
PfeI	GAWTC	5 cut(s)	1184, 2015, 2749, 2755, 3138
PleI	GAGTC	7 cut(s)	210, 1099, 1274, 1798, 2171, 2380, 2662
PpsI	GAGTC	7 cut(s)	210, 1099, 1274, 1798, 2171, 2380, 2662
Ppu21I	YACGTR	1 cut(s)	2126
PpuMI	RGGWCCY	1 cut(s)	1198
PsiI	TTATAA	1 cut(s)	2295
Psp124BI	GAGCTC	3 cut(s)	975, 2473, 2523
Psp5II	RGGWCCY	1 cut(s)	1198
Psp6I	CCWGG	3 cut(s)	1292, 1436, 1521
PspEI	GGTNACC	2 cut(s)	158, 392
PspFI	CCCAGC	2 cut(s)	1914, 3091
PspGI	CCWGG	3 cut(s)	1292, 1436, 1521
PspN4I	GGNNCC	5 cut(s)	433, 694, 1057, 1076, 2712
PspPI	GGNCC	3 cut(s)	633, 1198, 2260
PspPPI	RGGWCCY	1 cut(s)	1198
PspXI	VCTCGAGB	1 cut(s)	2369
PstI	CTGCAG	4 cut(s)	529, 1770, 1855, 2170
PstNI	CAGNNNCTG	3 cut(s)	1859, 2752, 3113
PsuI	RGATCY	8 cut(s)	692, 754, 907, 2158, 2269, 2710, 3039, 3110
PvuII	CAGCTG	1 cut(s)	2011
RsaI	GTAC	5 cut(s)	316, 722, 805, 1268, 2124
RsaNI	GTAC	5 cut(s)	315, 721, 804, 1267, 2123
RseI	CAYNNNNRTG	2 cut(s)	1893, 2696
Rsr2I	CGGWCCG	1 cut(s)	633
RsrII	CGGWCCG	1 cut(s)	633
SacI	GAGCTC	3 cut(s)	975, 2473, 2523
SapI	GCTCTTC	3 cut(s)	665, 2511, 2781
Sau96I	GGNCC	3 cut(s)	633, 1198, 2260
ScaI	AGTACT	1 cut(s)	1268
SchI	GAGTC	7 cut(s)	211, 1100, 1274, 1799, 2171, 2381, 2663
ScrFI	CCNGG	3 cut(s)	1294, 1438, 1523
SduI	GDGCHC	5 cut(s)	424, 975, 2131, 2473, 2523
SfcI	CTRYAG	5 cut(s)	525, 1766, 1851, 2166, 3072
Sfr274I	CTCGAG	1 cut(s)	2369
SfuI	TTCGAA	1 cut(s)	872
SgrAI	CRCCGGYG	1 cut(s)	644
SinI	GGWCC	2 cut(s)	633, 1198
SlaI	CTCGAG	1 cut(s)	2369
SmiMI	CAYNNNNRTG	2 cut(s)	1893, 2696
SmlI	CTYRAG	6 cut(s)	152, 995, 1109, 2198, 2369, 3133
SmoI	CTYRAG	6 cut(s)	152, 995, 1109, 2198, 2369, 3133
SphI	GCATGC	1 cut(s)	2701
SspMI	CTAG	8 cut(s)	59, 1214, 1775, 2162, 2306, 2613, 2792, 3087
SstI	GAGCTC	3 cut(s)	975, 2473, 2523
StyD4I	CCNGG	3 cut(s)	1292, 1436, 1521
StyI	CCWWGG	2 cut(s)	225, 2076
TaiI	ACGT	3 cut(s)	66, 112, 2128
TaqI	TCGA	6 cut(s)	181, 872, 1283, 1360, 1566, 2370
TaqII	GACCGA	2 cut(s)	650, 860
TatI	WGTACW	1 cut(s)	1266
TauI	GCSGC	3 cut(s)	854, 1139, 1817
TfiI	GAWTC	5 cut(s)	1184, 2015, 2749, 2755, 3138
TscAI	CASTG	6 cut(s)	19, 201, 442, 1464, 1578, 1770
TseFI	GTSAC	3 cut(s)	392, 964, 2799
Tsp45I	GTSAC	3 cut(s)	392, 964, 2799
TspGWI	ACGGA	4 cut(s)	668, 705, 903, 983
TspRI	CASTG	6 cut(s)	19, 201, 442, 1464, 1578, 1770
VneI	GTGCAC	1 cut(s)	420
VpaK11BI	GGWCC	2 cut(s)	633, 1198
XbaI	TCTAGA	1 cut(s)	2612
XceI	RCATGY	1 cut(s)	2701
XhoI	CTCGAG	1 cut(s)	2369
XmiI	GTMKAC	1 cut(s)	2375
XmnI	GAANNNNTTC	3 cut(s)	674, 989, 1014
XspI	CTAG	8 cut(s)	59, 1214, 1775, 2162, 2306, 2613, 2792, 3087
ZrmI	AGTACT	1 cut(s)	1268
Zsp2I	ATGCAT	4 cut(s)	30, 1543, 1726, 2703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.