Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001628

Physical Location & Seq

Genomic Coordinates Reverse (-)

36559155 .. 36573796

Gene Structure 14642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG210200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGTTACTGCATCTGCATCTGCAACATGGAGAATTGGGTCTGGGGATGGTTGCGGTGGGATTGGGTGTTGTGACAGGTGGAGTAAGAGGTGGTGCAACAGCAAGTGGTGGTGGTGACCTTGAAACTGCTCTCGGCGAGTCCTTCAATATCAAAGAAGTTGGAGGATCATTGAATGACAAATCTGAGGAGCCTCAGGTAGGAGTTGGATTGGAGGAAGCGGAACAATGGCCGAGGCGGCTCAAATGGAGGACAATTCGAAACCGCAGAGGCACGGAAGCGACAGCAATGGAGATCTCGCATTGGAGAATGGCAGCTCAGGCGATGCTCATGATCAGCTTGTGCAGATGGTCACGGAGCTCAAATTCCAGAACGAATTCCTCAAGTCTCAGATTGAAGGCTTTCAGAGTGTGCAACCAGCAGCTTGAGGAAGAGAAGCAAACACGAGCTGCGGCAGAAAAGGCTCTGAAGCACCTTAGAGAAGAACACTTGGAAGCTGATTCAAGAGCGCAGGACCTCTTTGCAAAGCTAGCTGAAGATGACATTGAGGCTCGATTTCGTGAAGTAAATGAAAGAGCTGAGCGAGCATTATCCCAACAGTCAGCATTGCAGCAAGAGCTTGACAAAACCAGGCAACAAGCAAACGATGCACTGAAAGCAATTGATGCTGAGAGACAACAATTAAGAAGTGCAAATAATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005794 GO:0005802 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0031984 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048193 GO:0048285 GO:0051179 GO:0051234 GO:0051321 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098791 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRIP

Protein Analysis

233

Amino Acids

25.95

Weight (kDa)

7.04

Isoelectric Point (pI)

55.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66030 AT5G66030 AT5G66030 AT5G66030
fragaria_vesca	FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521
malus_domestica	MD02G1119300.v1.1 MD15G1233300.v1.1
prunus_persica	Prupe.7G179600_v2.0.a1 Prupe.7G179600_v2.0.a1
pyrus_communis	pycom02g09300 pycom05g12530 pycom15g20780
rosa_chinensis	RchiOBHm_Chr2g0097451 RchiOBHm_Chr2g0097461 RchiOBHm_Chr2g0097561 RchiOBHm_Chr2g0097581 RchiOBHm_Chr6g0253501
rosa_laevigata	RLG00000007707 RLG00000016726
rosa_multiflora	Rmu_sc0003151.1_g000017 Rmu_sc0005929.1_g000013 Rmu_sc0009080.1_g000004 Rmu_sc0023738.1_g000001 Rmu_sc0023972.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144680 Rroxscaffold_4G00289770
rosa_rugosa	Rorug02G0067100 Rorug02G0067200 Rorug02G0067300 Rorug02G0067400 Rorug05G0050700
rosa_samantha	Rh2AG113500 Rh2BG116600 Rh2CG118600 Rh2DG117600 Rh3AG216100 Rh3BG375000 Rh3CG269100 Rh3DG243100 Rh4BG210200 Rh4BG210300
rosa_wichuraiana	Rw2G008900 Rw2G019040 Rw3G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	53, 218, 235, 262, 449
AclWI	GGATC	1 cut(s)	172
AcoI	YGGCCR	1 cut(s)	227
AcsI	RAATTY	2 cut(s)	361, 373
AcuI	CTGAAG	2 cut(s)	485, 552
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	5 cut(s)	122, 145, 172, 394, 501
AjnI	CCWGG	1 cut(s)	626
Alw21I	GWGCWC	1 cut(s)	359
Alw26I	GTCTC	2 cut(s)	389, 664
AlwI	GGATC	1 cut(s)	172
AoxI	GGCC	1 cut(s)	227
ApeKI	GCWGC	4 cut(s)	311, 418, 446, 607
ApoI	RAATTY	2 cut(s)	361, 373
Asp700I	GAANNNNTTC	2 cut(s)	373, 398
AspLEI	GCGC	1 cut(s)	508
AspS9I	GGNCC	1 cut(s)	511
AsuHPI	GGTGA	1 cut(s)	125
AsuII	TTCGAA	1 cut(s)	256
AsuNHI	GCTAGC	1 cut(s)	526
AvaII	GGWCC	1 cut(s)	511
AxyI	CCTNAGG	1 cut(s)	192
BanII	GRGCYC	1 cut(s)	359
BauI	CACGAG	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	359
BbvI	GCAGC	4 cut(s)	323, 430, 433, 619
BccI	CCATC	2 cut(s)	40, 339
BciT130I	CCWGG	1 cut(s)	628
BclI	TGATCA	1 cut(s)	330
BcoDI	GTCTC	2 cut(s)	389, 664
BfaI	CTAG	1 cut(s)	527
BglI	GCCNNNNNGGC	1 cut(s)	235
BglII	AGATCT	1 cut(s)	291
BisI	GCNGC	6 cut(s)	236, 312, 419, 447, 450, 608
BlpI	GCTNAGC	1 cut(s)	576
BlsI	GCNGC	6 cut(s)	237, 313, 420, 448, 451, 609
Bme1390I	CCNGG	1 cut(s)	628
Bme18I	GGWCC	1 cut(s)	511
BmgT120I	GGNCC	1 cut(s)	511
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	628
BmsI	GCATC	5 cut(s)	19, 25, 312, 634, 652
BmtI	GCTAGC	1 cut(s)	530
Bpu10I	CCTNAGC	1 cut(s)	315
Bpu1102I	GCTNAGC	1 cut(s)	576
Bpu14I	TTCGAA	1 cut(s)	256
BpuEI	CTTGAG	2 cut(s)	364, 443
BsaJI	CCNNGG	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse21I	CCTNAGG	1 cut(s)	192
Bse3DI	GCAATG	2 cut(s)	291, 602
BseBI	CCWGG	1 cut(s)	628
BseDI	CCNNGG	1 cut(s)	230
BseGI	GGATG	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMI	GCAATG	2 cut(s)	291, 602
BseMII	CTCAG	6 cut(s)	174, 206, 329, 400, 567, 657
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	4 cut(s)	323, 430, 433, 619
BsgI	GTGCAG	1 cut(s)	361
BshFI	GGCC	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	359
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	2 cut(s)	389, 664
BsnI	GGCC	1 cut(s)	229
Bsp119I	TTCGAA	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp143I	GATC	3 cut(s)	164, 291, 330
Bsp1720I	GCTNAGC	1 cut(s)	576
BspACI	CCGC	5 cut(s)	53, 218, 235, 262, 449
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	6 cut(s)	175, 205, 328, 399, 568, 658
BspHI	TCATGA	1 cut(s)	327
BspLI	GGNNCC	1 cut(s)	189
BspOI	GCTAGC	1 cut(s)	530
BspPI	GGATC	1 cut(s)	172
BspT104I	TTCGAA	1 cut(s)	256
BsrDI	GCAATG	2 cut(s)	291, 602
BssECI	CCNNGG	1 cut(s)	230
BssMI	GATC	3 cut(s)	164, 291, 330
BssSI	CACGAG	1 cut(s)	441
Bst2BI	CACGAG	1 cut(s)	441
Bst2UI	CCWGG	1 cut(s)	628
Bst4CI	ACNGT	1 cut(s)	597
Bst6I	CTCTTC	1 cut(s)	423
BstAPI	GCANNNNNTGC	2 cut(s)	644, 662
BstBI	TTCGAA	1 cut(s)	256
BstC8I	GCNNGC	2 cut(s)	528, 582
BstDEI	CTNAG	7 cut(s)	183, 192, 315, 386, 473, 576, 666
BstEII	GGTNACC	1 cut(s)	113
BstENI	CCTNNNNNAGG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	508
BstKTI	GATC	3 cut(s)	167, 294, 333
BstMAI	GTCTC	2 cut(s)	389, 664
BstMBI	GATC	3 cut(s)	164, 291, 330
BstMWI	GCNNNNNNNGC	9 cut(s)	235, 317, 458, 527, 581, 613, 644, 653, 662
BstNI	CCWGG	1 cut(s)	628
BstPI	GGTNACC	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	626
BstV1I	GCAGC	4 cut(s)	323, 430, 433, 619
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
Bsu36I	CCTNAGG	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	229
BtgZI	GCGATG	1 cut(s)	335
BtsCI	GGATG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	647
Cac8I	GCNNGC	2 cut(s)	528, 582
CciI	TCATGA	1 cut(s)	327
CfoI	GCGC	1 cut(s)	508
Cfr13I	GGNCC	1 cut(s)	511
CviAII	CATG	2 cut(s)	26, 328
DdeI	CTNAG	7 cut(s)	183, 192, 315, 386, 473, 576, 666
DpnI	GATC	3 cut(s)	166, 293, 332
DpnII	GATC	3 cut(s)	164, 291, 330
EaeI	YGGCCR	1 cut(s)	227
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Ecl136II	GAGCTC	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	359
Eco47I	GGWCC	1 cut(s)	511
Eco53kI	GAGCTC	1 cut(s)	357
Eco57I	CTGAAG	2 cut(s)	485, 552
Eco81I	CCTNAGG	1 cut(s)	192
Eco91I	GGTNACC	1 cut(s)	113
EcoICRI	GAGCTC	1 cut(s)	357
EcoNI	CCTNNNNNAGG	1 cut(s)	195
EcoO109I	RGGNCCY	1 cut(s)	511
EcoO65I	GGTNACC	1 cut(s)	113
EcoRI	GAATTC	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	626
EcoT38I	GRGCYC	1 cut(s)	359
FaeI	CATG	2 cut(s)	29, 331
FaiI	YATR	2 cut(s)	27, 329
FatI	CATG	2 cut(s)	25, 327
FbaI	TGATCA	1 cut(s)	330
Fnu4HI	GCNGC	6 cut(s)	236, 312, 419, 447, 450, 608
FokI	GGATG	1 cut(s)	58
FriOI	GRGCYC	1 cut(s)	359
Fsp4HI	GCNGC	6 cut(s)	236, 312, 419, 447, 450, 608
FspBI	CTAG	1 cut(s)	527
GlaI	GCGC	1 cut(s)	507
GluI	GCNGC	6 cut(s)	236, 312, 419, 447, 450, 608
HaeIII	GGCC	1 cut(s)	229
HhaI	GCGC	1 cut(s)	508
Hin1II	CATG	2 cut(s)	29, 331
Hin6I	GCGC	1 cut(s)	506
HinP1I	GCGC	1 cut(s)	506
HinfI	GANTC	2 cut(s)	137, 497
HphI	GGTGA	1 cut(s)	125
Hpy188I	TCNGA	4 cut(s)	184, 389, 404, 465
Hpy188III	TCNNGA	4 cut(s)	328, 366, 501, 557
HpyAV	CCTTC	2 cut(s)	151, 388
HpyCH4III	ACNGT	1 cut(s)	597
HpyF10VI	GCNNNNNNNGC	9 cut(s)	235, 317, 458, 527, 581, 613, 644, 653, 662
HpyF3I	CTNAG	7 cut(s)	183, 192, 315, 386, 473, 576, 666
Hsp92II	CATG	2 cut(s)	29, 331
HspAI	GCGC	1 cut(s)	506
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	3 cut(s)	164, 291, 330
LmnI	GCTCC	2 cut(s)	187, 354
LpnPI	CCDG	9 cut(s)	26, 60, 179, 302, 379, 428, 494, 613, 640
Lsp1109I	GCAGC	4 cut(s)	323, 430, 433, 619
LweI	GCATC	5 cut(s)	19, 25, 312, 634, 652
MaeI	CTAG	1 cut(s)	527
MaeIII	GTNAC	4 cut(s)	3, 70, 113, 348
MalI	GATC	3 cut(s)	166, 293, 332
MboI	GATC	3 cut(s)	164, 291, 330
MboII	GAAGA	3 cut(s)	440, 491, 545
MfeI	CAATTG	1 cut(s)	657
MflI	RGATCY	1 cut(s)	291
MhlI	GDGCHC	1 cut(s)	359
MluCI	AATT	6 cut(s)	32, 252, 361, 373, 657, 677
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	2 cut(s)	139, 184
MroXI	GAANNNNTTC	2 cut(s)	373, 398
MseI	TTAA	1 cut(s)	680
MspR9I	CCNGG	1 cut(s)	628
MunI	CAATTG	1 cut(s)	657
MvaI	CCWGG	1 cut(s)	628
MwoI	GCNNNNNNNGC	9 cut(s)	235, 317, 458, 527, 581, 613, 644, 653, 662
NdeII	GATC	3 cut(s)	164, 291, 330
NheI	GCTAGC	1 cut(s)	526
NlaIII	CATG	2 cut(s)	29, 331
NlaIV	GGNNCC	1 cut(s)	189
NmeAIII	GCCGAG	2 cut(s)	111, 255
NmuCI	GTSAC	3 cut(s)	70, 113, 348
NspV	TTCGAA	1 cut(s)	256
PagI	TCATGA	1 cut(s)	327
PdmI	GAANNNNTTC	2 cut(s)	373, 398
PfeI	GAWTC	1 cut(s)	497
PkrI	GCNGC	6 cut(s)	237, 313, 420, 448, 451, 609
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PpuMI	RGGWCCY	1 cut(s)	511
Psp124BI	GAGCTC	1 cut(s)	359
Psp5II	RGGWCCY	1 cut(s)	511
Psp6I	CCWGG	1 cut(s)	626
PspEI	GGTNACC	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	626
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	511
PspPPI	RGGWCCY	1 cut(s)	511
PsuI	RGATCY	1 cut(s)	291
SacI	GAGCTC	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	680
SatI	GCNGC	6 cut(s)	236, 312, 419, 447, 450, 608
Sau3AI	GATC	3 cut(s)	164, 291, 330
Sau96I	GGNCC	1 cut(s)	511
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	628
SduI	GDGCHC	1 cut(s)	359
SfaNI	GCATC	5 cut(s)	19, 25, 312, 634, 652
SfuI	TTCGAA	1 cut(s)	256
SinI	GGWCC	1 cut(s)	511
SmlI	CTYRAG	2 cut(s)	379, 422
SmoI	CTYRAG	2 cut(s)	379, 422
Sse9I	AATT	6 cut(s)	32, 252, 361, 373, 657, 677
SsiI	CCGC	5 cut(s)	53, 218, 235, 262, 449
SspMI	CTAG	1 cut(s)	527
SstI	GAGCTC	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	626
TaaI	ACNGT	1 cut(s)	597
TaqI	TCGA	2 cut(s)	256, 550
TasI	AATT	6 cut(s)	32, 252, 361, 373, 657, 677
TauI	GCSGC	2 cut(s)	238, 452
TfiI	GAWTC	1 cut(s)	497
Tru1I	TTAA	1 cut(s)	680
Tru9I	TTAA	1 cut(s)	680
TscAI	CASTG	1 cut(s)	654
TseFI	GTSAC	3 cut(s)	70, 113, 348
TseI	GCWGC	4 cut(s)	311, 418, 446, 607
Tsp45I	GTSAC	3 cut(s)	70, 113, 348
TspDTI	ATGAA	1 cut(s)	582
TspGWI	ACGGA	2 cut(s)	287, 367
TspRI	CASTG	1 cut(s)	654
VpaK11BI	GGWCC	1 cut(s)	511
XagI	CCTNNNNNAGG	1 cut(s)	195
XapI	RAATTY	2 cut(s)	361, 373
XmnI	GAANNNNTTC	2 cut(s)	373, 398
XspI	CTAG	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.