RchiOBHm_Chr2g0097581

golgin-97, RanBP2alpha,Imh1p and p230/golgin-245

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
10139865 .. 10144671
4807 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47245

Sequence Viewer

Length: 1692 bp
ATGGCCGAGGCGGCTCAAATGGAGGACAATTGGAAACCGCAGAGGCACGGAAGCGATAGCAATGGAGATCTGGCATTGGAGAATGGCAGCTCAGGCGATGCTCATGATCAGCTTGTGCAGATGGTCACGGAGCTCAAATTGCAGAACGAATTCCTCAAGTCTCAGATTGAAGGCTTTCAGAGTTTGCAACCAGCAGAACCGAGTGAAGCCGGTGGTTCCGAAGAGGTTGAACGGCTCCGGCAGAGCATTGAGTCATTGAATTCGCAGCTTGAGGAAGAGAAGCAAACACGAGCTGCGGCAGAAGAGGCTCTGAAGCACCTTAGAGAAGAACACTTGGAAGCTGATTCAAGAGCGCAGGACCTCTCTGCAAAGCTAGCTGAAGCTCAACAGAAGTTGGATCAAGAAATTAAAGAGCGTGAAGAGAAGTACTCTGATCTTGACTCGAAATTCACCAGGCTTCACAAACGAGCAAAGCAGCGTATTCAAGATGTTCAAAAGGAAAAAGATGACATTGAGGCTAGATTTCGTGAAGTAAATGAAAGAGCTGAGCGAGCATTATCCCAACAGTCAGCATTGCAGCAAGAGCTTGACAAAACCAGGCAACAAGCAAACGATGCACTGAAAGCAATTGATGCTGAGAGACAACAACTAAGAAGTGCAAATAATAAACTACGAGACAACCTGGAGGAATTGCGAAATGCACTGCAACCAAAAGAGAGTGCTATCGAGGCACTGCAACATACAATTTCGGAGAAGGATCAGATGTTAGAAGATATGCGAGGTTTGCTTCAGGCTGCTGAGGAAAAAAGGCAATCTTCATTAGCTGAACTCTCTGCTAAACATCAGAAGAATTTGGAGAGTTTGGAAGCGCAACTTGCGGATGCATCATCCGATAGAAATAAAGCAACTGAAACTATTTCTTCACTGCAGATGCTAGTTGCTGAGAAAGAGTCAAAGATTGCAGAGATGGAAGCGGCATCAACGGGTGAGGCAGCAAGGCTTAGAGCTGCTGCAGAAACTGTAAAAGGAGAGCTTGCTCACCTTAAACATGAGCATGAGAAAGAAAAGGAGAGCTGGGAAGCTGCCTCTCGAGGACTGAAAACAAAGCTGGAAGTCACTGAGAGCAATCGGATATGTGCTGAAATTGAAGTAGCCAAAATGAGAAGTCAGCTGGAATCAGAGGTGTCTGCACAAACCCAAATGCTTGATGCGAGAGATGCTGAACTTGCAACTGCCAAGGAGGAGATCAACCGCCTTAAAAATGAATTTTCTTCTTATAAAGTACGTGCTCATGCACTTCTCCAAAAGAAGGATGCAGATCTAGCTGCAGCTAAAGACTCTGAACAAGTTACAGCTCTTGAGGAAGCACTAAAAGTGCTTTCGTCTCTGAGTGCTGAAAGAGATAAGGCCCTTCAGGATCTTCAGGATGCCTTGACTAATTATAATAAAGAACTAGCAGAAAGAGATGCAGCTCTTAATGATACCATGCAGCAGATCAAGAGCTTAGAAAAAAAGCTCGAGTCTACTAATGCCCATCACCGATCCGCCAAAGAAGCATGGGAAGTTAACCTTAGTAATTTGGAAGAAACATGGCGGGCAAGATGTGAAACATTAAGAGCTCAAAATGAAGCATCTTCTGGAGAAGACATAAAAAAGAATTGGAAGAGCTCAAATTACGGTATAAAAAATTGA

Protein Analysis

563

Amino Acids

63.53

Weight (kDa)

5.13

Isoelectric Point (pI)

51.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1278, 1443
AccI GTMKAC 1 cut(s) 1523
AciI CCGC 8 cut(s) 11, 38, 296, 878, 974, 1252, 1545, 1594
AclWI GGATC 4 cut(s) 405, 765, 1425, 1536
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 5 cut(s) 149, 259, 446, 850, 1265
AcuI CTGAAG 5 cut(s) 332, 399, 773, 1397, 1406
AfaI GTAC 2 cut(s) 428, 1284
AfiI CCNNNNNNNGG 1 cut(s) 1309
AgsI TTSAA 7 cut(s) 170, 230, 259, 348, 485, 494, 1148
AjnI CCWGG 3 cut(s) 452, 596, 681
Alw21I GWGCWC 4 cut(s) 135, 1291, 1621, 1670
Alw26I GTCTC 4 cut(s) 165, 634, 669, 1389
AlwI GGATC 4 cut(s) 405, 765, 1425, 1536
AlwNI CAGNNNCTG 1 cut(s) 1019
Ama87I CYCGRG 2 cut(s) 1089, 1517
AoxI GGCC 2 cut(s) 3, 1407
ApoI RAATTY 5 cut(s) 149, 259, 446, 850, 1265
Asp700I GAANNNNTTC 2 cut(s) 149, 174
AspLEI GCGC 2 cut(s) 355, 871
AspS9I GGNCC 2 cut(s) 358, 1408
AsuHPI GGTGA 4 cut(s) 442, 998, 1031, 1529
AsuNHI GCTAGC 1 cut(s) 373
AvaI CYCGRG 2 cut(s) 1089, 1517
AvaII GGWCC 1 cut(s) 358
BanII GRGCYC 3 cut(s) 135, 1621, 1670
BauI CACGAG 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 1650
Bbv12I GWGCWC 4 cut(s) 135, 1291, 1621, 1670
BbvCI CCTCAGC 1 cut(s) 798
BccI CCATC 3 cut(s) 115, 961, 1542
BceAI ACGGC 1 cut(s) 248
BciT130I CCWGG 3 cut(s) 454, 598, 683
BclI TGATCA 1 cut(s) 106
BcoDI GTCTC 4 cut(s) 165, 634, 669, 1389
BfaI CTAG 5 cut(s) 374, 519, 935, 1322, 1454
BfmI CTRYAG 3 cut(s) 926, 1011, 1326
BglI GCCNNNNNGGC 1 cut(s) 11
BglII AGATCT 2 cut(s) 67, 1318
BlpI GCTNAGC 1 cut(s) 546
BmcAI AGTACT 1 cut(s) 428
Bme1390I CCNGG 3 cut(s) 454, 598, 683
Bme18I GGWCC 1 cut(s) 358
BmeT110I CYCGRG 2 cut(s) 1089, 1517
BmgT120I GGNCC 2 cut(s) 358, 1408
BmiI GGNNCC 2 cut(s) 217, 236
BmrFI CCNGG 3 cut(s) 454, 598, 683
BmtI GCTAGC 1 cut(s) 377
BpiI GAAGAC 1 cut(s) 1650
BplI GAGNNNNNCTC 2 cut(s) 413, 445
BpmI CTGGAG 2 cut(s) 704, 1659
Bpu10I CCTNAGC 2 cut(s) 91, 798
Bpu1102I GCTNAGC 1 cut(s) 546
BpuEI CTTGAG 3 cut(s) 140, 290, 1379
BsaAI YACGTR 1 cut(s) 1286
BsaBI GATNNNNATC 1 cut(s) 1317
BsaJI CCNNGG 2 cut(s) 6, 1236
Bsc4I CCNNNNNNNGG 1 cut(s) 1309
Bse118I RCCGGY 1 cut(s) 209
Bse3DI GCAATG 2 cut(s) 67, 572
Bse8I GATNNNNATC 1 cut(s) 1317
BseBI CCWGG 3 cut(s) 454, 598, 683
BseDI CCNNGG 2 cut(s) 6, 1236
BseGI GGATG 4 cut(s) 886, 887, 1318, 1432
BseJI GATNNNNATC 1 cut(s) 1317
BseLI CCNNNNNNNGG 1 cut(s) 1309
BseMI GCAATG 2 cut(s) 67, 572
BseMII CTCAG 8 cut(s) 105, 176, 537, 627, 789, 933, 1110, 1379
BseRI GAGGAG 1 cut(s) 1256
BseYI CCCAGC 1 cut(s) 1074
BsgI GTGCAG 2 cut(s) 137, 1173
BshFI GGCC 2 cut(s) 5, 1409
BsiHKAI GWGCWC 4 cut(s) 135, 1291, 1621, 1670
BsiHKCI CYCGRG 2 cut(s) 1089, 1517
BsiSI CCGG 2 cut(s) 210, 238
BslI CCNNNNNNNGG 1 cut(s) 1309
BsmAI GTCTC 4 cut(s) 165, 634, 669, 1389
BsmBI CGTCTC 1 cut(s) 1389
BsnI GGCC 2 cut(s) 5, 1409
BsoBI CYCGRG 2 cut(s) 1089, 1517
Bsp1286I GDGCHC 4 cut(s) 135, 1291, 1621, 1670
Bsp1720I GCTNAGC 1 cut(s) 546
BspACI CCGC 8 cut(s) 11, 38, 296, 878, 974, 1252, 1545, 1594
BspANI GGCC 2 cut(s) 5, 1409
BspCNI CTCAG 8 cut(s) 104, 175, 538, 628, 790, 934, 1111, 1380
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 2 cut(s) 217, 236
BspMAI CTGCAG 3 cut(s) 930, 1015, 1330
BspOI GCTAGC 1 cut(s) 377
BspPI GGATC 4 cut(s) 405, 765, 1425, 1536
BspQI GCTCTTC 1 cut(s) 1658
BsrDI GCAATG 2 cut(s) 67, 572
BsrFI RCCGGY 1 cut(s) 209
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 2 cut(s) 6, 1236
BssSI CACGAG 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 1236
Bst2BI CACGAG 1 cut(s) 288
Bst2UI CCWGG 3 cut(s) 454, 598, 683
Bst4CI ACNGT 3 cut(s) 567, 1021, 1679
Bst6I CTCTTC 5 cut(s) 216, 270, 297, 414, 1658
BstAPI GCANNNNNTGC 2 cut(s) 614, 632
BstBAI YACGTR 1 cut(s) 1286
BstC8I GCNNGC 4 cut(s) 375, 552, 1035, 1596
BstF5I GGATG 4 cut(s) 886, 887, 1318, 1432
BstHHI GCGC 2 cut(s) 355, 871
BstMAI GTCTC 4 cut(s) 165, 634, 669, 1389
BstNI CCWGG 3 cut(s) 454, 598, 683
BstSCI CCNGG 3 cut(s) 452, 596, 681
BstSFI CTRYAG 3 cut(s) 926, 1011, 1326
BstV2I GAAGAC 1 cut(s) 1650
BstX2I RGATCY 3 cut(s) 67, 1318, 1417
BstYI RGATCY 3 cut(s) 67, 1318, 1417
BsuRI GGCC 2 cut(s) 5, 1409
BtgZI GCGATG 1 cut(s) 111
BtsCI GGATG 4 cut(s) 886, 887, 1318, 1432
BtsI GCAGTG 3 cut(s) 701, 731, 923
BtsIMutI CAGTG 5 cut(s) 617, 701, 731, 923, 1116
Cac8I GCNNGC 4 cut(s) 375, 552, 1035, 1596
CaiI CAGNNNCTG 1 cut(s) 1019
CciI TCATGA 1 cut(s) 103
CfoI GCGC 2 cut(s) 355, 871
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 2 cut(s) 358, 1408
Csp6I GTAC 2 cut(s) 427, 1283
CviAII CATG 7 cut(s) 104, 1049, 1055, 1292, 1486, 1557, 1590
CviQI GTAC 2 cut(s) 427, 1283
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 5 cut(s) 216, 270, 297, 414, 1658
EarI CTCTTC 5 cut(s) 216, 270, 297, 414, 1658
EciI GGCGGA 1 cut(s) 1534
Ecl136II GAGCTC 3 cut(s) 133, 1619, 1668
Eco130I CCWWGG 1 cut(s) 1236
Eco24I GRGCYC 3 cut(s) 135, 1621, 1670
Eco47I GGWCC 1 cut(s) 358
Eco53kI GAGCTC 3 cut(s) 133, 1619, 1668
Eco57I CTGAAG 5 cut(s) 332, 399, 773, 1397, 1406
Eco88I CYCGRG 2 cut(s) 1089, 1517
EcoICRI GAGCTC 3 cut(s) 133, 1619, 1668
EcoO109I RGGNCCY 2 cut(s) 358, 1408
EcoRI GAATTC 2 cut(s) 149, 259
EcoRII CCWGG 3 cut(s) 452, 596, 681
EcoT14I CCWWGG 1 cut(s) 1236
EcoT22I ATGCAT 1 cut(s) 886
EcoT38I GRGCYC 3 cut(s) 135, 1621, 1670
ErhI CCWWGG 1 cut(s) 1236
Esp3I CGTCTC 1 cut(s) 1389
FaeI CATG 7 cut(s) 107, 1052, 1058, 1295, 1489, 1560, 1593
FalI AAGNNNNNCTT 8 cut(s) 799, 831, 858, 890, 1017, 1049, 1554, 1586
FatI CATG 7 cut(s) 103, 1048, 1054, 1291, 1485, 1556, 1589
FauI CCCGC 1 cut(s) 1587
FbaI TGATCA 1 cut(s) 106
FblI GTMKAC 1 cut(s) 1523
FokI GGATG 4 cut(s) 874, 893, 1325, 1439
FriOI GRGCYC 3 cut(s) 135, 1621, 1670
FspBI CTAG 5 cut(s) 374, 519, 935, 1322, 1454
GlaI GCGC 2 cut(s) 354, 870
GsaI CCCAGC 1 cut(s) 1078
GsuI CTGGAG 2 cut(s) 704, 1659
HaeIII GGCC 2 cut(s) 5, 1409
HapII CCGG 2 cut(s) 210, 238
HhaI GCGC 2 cut(s) 355, 871
Hin1II CATG 7 cut(s) 107, 1052, 1058, 1295, 1489, 1560, 1593
Hin6I GCGC 2 cut(s) 353, 869
HinP1I GCGC 2 cut(s) 353, 869
HincII GTYRAC 1 cut(s) 1567
HindII GTYRAC 1 cut(s) 1567
HinfI GANTC 7 cut(s) 251, 344, 440, 950, 1175, 1337, 1520
HpaI GTTAAC 1 cut(s) 1567
HpaII CCGG 2 cut(s) 210, 238
HphI GGTGA 4 cut(s) 442, 998, 1031, 1529
Hpy166II GTNNAC 2 cut(s) 1524, 1567
Hpy8I GTNNAC 2 cut(s) 1524, 1567
HpyAV CCTTC 4 cut(s) 164, 748, 1303, 1421
HpyCH4III ACNGT 3 cut(s) 567, 1021, 1679
HpyCH4IV ACGT 1 cut(s) 1285
HpySE526I ACGT 1 cut(s) 1285
Hsp92II CATG 7 cut(s) 107, 1052, 1058, 1295, 1489, 1560, 1593
HspAI GCGC 2 cut(s) 353, 869
Ksp22I TGATCA 1 cut(s) 106
KspAI GTTAAC 1 cut(s) 1567
LguI GCTCTTC 1 cut(s) 1658
LmnI GCTCC 2 cut(s) 130, 240
MaeI CTAG 5 cut(s) 374, 519, 935, 1322, 1454
MaeII ACGT 1 cut(s) 1285
MaeIII GTNAC 3 cut(s) 124, 1114, 1348
MfeI CAATTG 2 cut(s) 28, 627
MflI RGATCY 3 cut(s) 67, 1318, 1417
MhlI GDGCHC 4 cut(s) 135, 1291, 1621, 1670
MlyI GAGTC 5 cut(s) 260, 434, 959, 1331, 1529
MmeI TCCRAC 1 cut(s) 375
Mph1103I ATGCAT 1 cut(s) 886
MroXI GAANNNNTTC 2 cut(s) 149, 174
MseI TTAA 6 cut(s) 408, 1044, 1257, 1476, 1566, 1613
MslI CAYNNNNRTG 1 cut(s) 1053
MspA1I CMGCKG 1 cut(s) 1171
MspI CCGG 2 cut(s) 210, 238
MspR9I CCNGG 3 cut(s) 454, 598, 683
MunI CAATTG 2 cut(s) 28, 627
MvaI CCWGG 3 cut(s) 454, 598, 683
NheI GCTAGC 1 cut(s) 373
NlaIII CATG 7 cut(s) 107, 1052, 1058, 1295, 1489, 1560, 1593
NlaIV GGNNCC 2 cut(s) 217, 236
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 2 cut(s) 124, 1114
NsiI ATGCAT 1 cut(s) 886
PaeR7I CTCGAG 2 cut(s) 1089, 1517
PagI TCATGA 1 cut(s) 103
PciSI GCTCTTC 1 cut(s) 1658
PdmI GAANNNNTTC 2 cut(s) 149, 174
PfeI GAWTC 2 cut(s) 344, 1175
PleI GAGTC 5 cut(s) 259, 434, 958, 1331, 1528
PpsI GAGTC 5 cut(s) 259, 434, 958, 1331, 1528
Ppu21I YACGTR 1 cut(s) 1286
PpuMI RGGWCCY 1 cut(s) 358
PsiI TTATAA 2 cut(s) 1278, 1443
Psp124BI GAGCTC 3 cut(s) 135, 1621, 1670
Psp5II RGGWCCY 1 cut(s) 358
Psp6I CCWGG 3 cut(s) 452, 596, 681
PspFI CCCAGC 1 cut(s) 1074
PspGI CCWGG 3 cut(s) 452, 596, 681
PspN4I GGNNCC 2 cut(s) 217, 236
PspPI GGNCC 2 cut(s) 358, 1408
PspPPI RGGWCCY 1 cut(s) 358
PspXI VCTCGAGB 1 cut(s) 1517
PstI CTGCAG 3 cut(s) 930, 1015, 1330
PstNI CAGNNNCTG 1 cut(s) 1019
PsuI RGATCY 3 cut(s) 67, 1318, 1417
PvuII CAGCTG 1 cut(s) 1171
RsaI GTAC 2 cut(s) 428, 1284
RsaNI GTAC 2 cut(s) 427, 1283
RseI CAYNNNNRTG 1 cut(s) 1053
SacI GAGCTC 3 cut(s) 135, 1621, 1670
SapI GCTCTTC 1 cut(s) 1658
SaqAI TTAA 6 cut(s) 408, 1044, 1257, 1476, 1566, 1613
Sau96I GGNCC 2 cut(s) 358, 1408
ScaI AGTACT 1 cut(s) 428
SchI GAGTC 5 cut(s) 260, 434, 959, 1331, 1529
ScrFI CCNGG 3 cut(s) 454, 598, 683
SduI GDGCHC 4 cut(s) 135, 1291, 1621, 1670
SfcI CTRYAG 3 cut(s) 926, 1011, 1326
Sfr274I CTCGAG 2 cut(s) 1089, 1517
SinI GGWCC 1 cut(s) 358
SlaI CTCGAG 2 cut(s) 1089, 1517
SmiMI CAYNNNNRTG 1 cut(s) 1053
SmlI CTYRAG 5 cut(s) 155, 269, 1089, 1358, 1517
SmoI CTYRAG 5 cut(s) 155, 269, 1089, 1358, 1517
SsiI CCGC 8 cut(s) 11, 38, 296, 878, 974, 1252, 1545, 1594
SspMI CTAG 5 cut(s) 374, 519, 935, 1322, 1454
SstI GAGCTC 3 cut(s) 135, 1621, 1670
StyD4I CCNGG 3 cut(s) 452, 596, 681
StyI CCWWGG 1 cut(s) 1236
TaaI ACNGT 3 cut(s) 567, 1021, 1679
TaiI ACGT 1 cut(s) 1288
TaqI TCGA 4 cut(s) 443, 726, 1090, 1518
TatI WGTACW 1 cut(s) 426
TauI GCSGC 3 cut(s) 14, 299, 977
TfiI GAWTC 2 cut(s) 344, 1175
Tru1I TTAA 6 cut(s) 408, 1044, 1257, 1476, 1566, 1613
Tru9I TTAA 6 cut(s) 408, 1044, 1257, 1476, 1566, 1613
TscAI CASTG 5 cut(s) 624, 708, 738, 930, 1123
TseFI GTSAC 2 cut(s) 124, 1114
Tsp45I GTSAC 2 cut(s) 124, 1114
TspDTI ATGAA 4 cut(s) 552, 807, 1278, 1641
TspGWI ACGGA 2 cut(s) 63, 143
TspRI CASTG 5 cut(s) 624, 708, 738, 930, 1123
VpaK11BI GGWCC 1 cut(s) 358
XapI RAATTY 5 cut(s) 149, 259, 446, 850, 1265
XhoI CTCGAG 2 cut(s) 1089, 1517
XmiI GTMKAC 1 cut(s) 1523
XmnI GAANNNNTTC 2 cut(s) 149, 174
XspI CTAG 5 cut(s) 374, 519, 935, 1322, 1454
ZrmI AGTACT 1 cut(s) 428
Zsp2I ATGCAT 1 cut(s) 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.