Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009080.1

Orthogroup ID

OG0001628

Physical Location & Seq

Genomic Coordinates Forward (+)

9321 .. 10224

Gene Structure 904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009080.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atggtcgaggcggctcaaatggaggacaattcgaaaccgcagaggaacggaagcgacaataatggagatctcgcattggagaatggcagctcaggcgatgctcatgatcagcttgtgcagatggtcacggagctcaaattccagaacgaattcctcaagtctcagatcgaaggctttcagagtgtgcaaccagcagaaccgagtgaagccggtggttccgaagaggttgaacggctccgagaagaacacttggaagctgattcaagagcgcaggacctctctgcaaagctagctgaagctcaacaaaagttggatcaagaaattaaagagcgtgaagagaagtactctgatcttgactcgaaattcaccaggcttcacaaacgagcaaagcagcgtattcaagatgttcaaaaggaaaaagatgacactgaggctcgatttcgtgaagtaaatgaaagagctgagcgagcattatcccaacagtcagcattgcagcaagagcttgacaaaaccaggcaacaagcaaacgatgcactgaaagcaattgatgctgagagacaacaattaagaagtgcaaataataagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005794 GO:0005802 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0031984 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048193 GO:0048285 GO:0051179 GO:0051234 GO:0051321 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098791 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRIP

Protein Analysis

195

Amino Acids

22.24

Weight (kDa)

4.88

Isoelectric Point (pI)

53.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66030 AT5G66030 AT5G66030 AT5G66030
fragaria_vesca	FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521
malus_domestica	MD02G1119300.v1.1 MD15G1233300.v1.1
prunus_persica	Prupe.7G179600_v2.0.a1 Prupe.7G179600_v2.0.a1
pyrus_communis	pycom02g09300 pycom05g12530 pycom15g20780
rosa_chinensis	RchiOBHm_Chr2g0097451 RchiOBHm_Chr2g0097461 RchiOBHm_Chr2g0097561 RchiOBHm_Chr2g0097581 RchiOBHm_Chr6g0253501
rosa_laevigata	RLG00000007707 RLG00000016726
rosa_multiflora	Rmu_sc0003151.1_g000017 Rmu_sc0005929.1_g000013 Rmu_sc0009080.1_g000004 Rmu_sc0023738.1_g000001 Rmu_sc0023972.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144680 Rroxscaffold_4G00289770
rosa_rugosa	Rorug02G0067100 Rorug02G0067200 Rorug02G0067300 Rorug02G0067400 Rorug05G0050700
rosa_samantha	Rh2AG113500 Rh2BG116600 Rh2CG118600 Rh2DG117600 Rh3AG216100 Rh3BG375000 Rh3CG269100 Rh3DG243100 Rh4BG210200 Rh4BG210300
rosa_wichuraiana	Rw2G008900 Rw2G019040 Rw3G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	11, 38
AclWI	GGATC	1 cut(s)	321
AcsI	RAATTY	3 cut(s)	137, 149, 362
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	1 cut(s)	344
AgsI	TTSAA	4 cut(s)	230, 264, 401, 410
AjnI	CCWGG	2 cut(s)	368, 512
AluBI	AGCT	9 cut(s)	90, 112, 133, 257, 289, 293, 299, 461, 502
AluI	AGCT	9 cut(s)	90, 112, 133, 257, 289, 293, 299, 461, 502
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	2 cut(s)	165, 550
AlwI	GGATC	1 cut(s)	321
ApeKI	GCWGC	3 cut(s)	87, 391, 493
ApoI	RAATTY	3 cut(s)	137, 149, 362
Asp700I	GAANNNNTTC	2 cut(s)	149, 174
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	1 cut(s)	274
AsuHPI	GGTGA	1 cut(s)	358
AsuII	TTCGAA	1 cut(s)	32
AsuNHI	GCTAGC	1 cut(s)	289
AvaII	GGWCC	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	3 cut(s)	99, 403, 505
BccI	CCATC	1 cut(s)	115
BceAI	ACGGC	1 cut(s)	248
BciT130I	CCWGG	2 cut(s)	370, 514
BclI	TGATCA	1 cut(s)	106
BcoDI	GTCTC	2 cut(s)	165, 550
BfaI	CTAG	1 cut(s)	290
BglII	AGATCT	1 cut(s)	67
BisI	GCNGC	4 cut(s)	12, 88, 392, 494
BlpI	GCTNAGC	1 cut(s)	462
BlsI	GCNGC	4 cut(s)	13, 89, 393, 495
BmcAI	AGTACT	1 cut(s)	344
Bme1390I	CCNGG	2 cut(s)	370, 514
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	2 cut(s)	217, 236
BmrFI	CCNGG	2 cut(s)	370, 514
BmsI	GCATC	3 cut(s)	88, 520, 538
BmtI	GCTAGC	1 cut(s)	293
BplI	GAGNNNNNCTC	2 cut(s)	329, 361
Bpu10I	CCTNAGC	1 cut(s)	91
Bpu1102I	GCTNAGC	1 cut(s)	462
Bpu14I	TTCGAA	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	140
Bse118I	RCCGGY	1 cut(s)	209
Bse3DI	GCAATG	1 cut(s)	488
BseBI	CCWGG	2 cut(s)	370, 514
BseMI	GCAATG	1 cut(s)	488
BseMII	CTCAG	5 cut(s)	105, 176, 420, 453, 543
BseXI	GCAGC	3 cut(s)	99, 403, 505
BsgI	GTGCAG	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	210
BsmAI	GTCTC	2 cut(s)	165, 550
Bsp119I	TTCGAA	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	5 cut(s)	67, 106, 165, 313, 349
Bsp1720I	GCTNAGC	1 cut(s)	462
BspACI	CCGC	2 cut(s)	11, 38
BspCNI	CTCAG	5 cut(s)	104, 175, 421, 454, 544
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	217, 236
BspOI	GCTAGC	1 cut(s)	293
BspPI	GGATC	1 cut(s)	321
BspT104I	TTCGAA	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	488
BsrFI	RCCGGY	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	209
BssMI	GATC	5 cut(s)	67, 106, 165, 313, 349
Bst2UI	CCWGG	2 cut(s)	370, 514
Bst4CI	ACNGT	1 cut(s)	483
Bst6I	CTCTTC	2 cut(s)	216, 330
BstAPI	GCANNNNNTGC	2 cut(s)	530, 548
BstBI	TTCGAA	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	291, 468
BstDEI	CTNAG	5 cut(s)	91, 162, 429, 462, 552
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	5 cut(s)	70, 109, 168, 316, 352
BstMAI	GTCTC	2 cut(s)	165, 550
BstMBI	GATC	5 cut(s)	67, 106, 165, 313, 349
BstMWI	GCNNNNNNNGC	7 cut(s)	93, 290, 467, 499, 530, 539, 548
BstNI	CCWGG	2 cut(s)	370, 514
BstSCI	CCNGG	2 cut(s)	368, 512
BstV1I	GCAGC	3 cut(s)	99, 403, 505
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BtgZI	GCGATG	1 cut(s)	111
BtsIMutI	CAGTG	2 cut(s)	426, 533
Cac8I	GCNNGC	2 cut(s)	291, 468
CciI	TCATGA	1 cut(s)	103
CfoI	GCGC	1 cut(s)	271
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	1 cut(s)	104
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	5 cut(s)	91, 162, 429, 462, 552
DpnI	GATC	5 cut(s)	69, 108, 167, 315, 351
DpnII	GATC	5 cut(s)	67, 106, 165, 313, 349
Eam1104I	CTCTTC	2 cut(s)	216, 330
EarI	CTCTTC	2 cut(s)	216, 330
Ecl136II	GAGCTC	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	274
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	315
EcoICRI	GAGCTC	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRI	GAATTC	1 cut(s)	149
EcoRII	CCWGG	2 cut(s)	368, 512
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	1 cut(s)	107
FaiI	YATR	1 cut(s)	105
FatI	CATG	1 cut(s)	103
FbaI	TGATCA	1 cut(s)	106
Fnu4HI	GCNGC	4 cut(s)	12, 88, 392, 494
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	4 cut(s)	12, 88, 392, 494
FspBI	CTAG	1 cut(s)	290
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	4 cut(s)	12, 88, 392, 494
HapII	CCGG	1 cut(s)	210
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	1 cut(s)	107
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HinfI	GANTC	2 cut(s)	260, 356
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	1 cut(s)	358
Hpy188I	TCNGA	5 cut(s)	165, 180, 220, 239, 349
Hpy188III	TCNNGA	7 cut(s)	104, 142, 264, 317, 353, 401, 443
HpyAV	CCTTC	1 cut(s)	164
HpyCH4III	ACNGT	1 cut(s)	483
HpyCH4V	TGCA	6 cut(s)	118, 187, 284, 493, 533, 575
HpyF10VI	GCNNNNNNNGC	7 cut(s)	93, 290, 467, 499, 530, 539, 548
HpyF3I	CTNAG	5 cut(s)	91, 162, 429, 462, 552
Hsp92II	CATG	1 cut(s)	107
HspAI	GCGC	1 cut(s)	269
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	5 cut(s)	67, 106, 165, 313, 349
LmnI	GCTCC	2 cut(s)	130, 240
LpnPI	CCDG	9 cut(s)	78, 155, 204, 223, 257, 355, 382, 499, 526
Lsp1109I	GCAGC	3 cut(s)	99, 403, 505
LweI	GCATC	3 cut(s)	88, 520, 538
MaeI	CTAG	1 cut(s)	290
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	5 cut(s)	69, 108, 167, 315, 351
MboI	GATC	5 cut(s)	67, 106, 165, 313, 349
MboII	GAAGA	3 cut(s)	233, 254, 347
MfeI	CAATTG	1 cut(s)	543
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	7 cut(s)	28, 137, 149, 321, 362, 543, 563
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	6 cut(s)	16, 36, 164, 217, 287, 424
MroXI	GAANNNNTTC	2 cut(s)	149, 174
MseI	TTAA	2 cut(s)	324, 566
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	2 cut(s)	370, 514
MunI	CAATTG	1 cut(s)	543
MvaI	CCWGG	2 cut(s)	370, 514
MwoI	GCNNNNNNNGC	7 cut(s)	93, 290, 467, 499, 530, 539, 548
NdeII	GATC	5 cut(s)	67, 106, 165, 313, 349
NheI	GCTAGC	1 cut(s)	289
NlaIII	CATG	1 cut(s)	107
NlaIV	GGNNCC	2 cut(s)	217, 236
NmuCI	GTSAC	1 cut(s)	124
NspV	TTCGAA	1 cut(s)	32
PagI	TCATGA	1 cut(s)	103
PdmI	GAANNNNTTC	2 cut(s)	149, 174
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	4 cut(s)	13, 89, 393, 495
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
PpuMI	RGGWCCY	1 cut(s)	274
Psp124BI	GAGCTC	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	2 cut(s)	368, 512
PspGI	CCWGG	2 cut(s)	368, 512
PspN4I	GGNNCC	2 cut(s)	217, 236
PspPI	GGNCC	1 cut(s)	274
PspPPI	RGGWCCY	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	324, 566
SatI	GCNGC	4 cut(s)	12, 88, 392, 494
Sau3AI	GATC	5 cut(s)	67, 106, 165, 313, 349
Sau96I	GGNCC	1 cut(s)	274
ScaI	AGTACT	1 cut(s)	344
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	2 cut(s)	370, 514
SduI	GDGCHC	1 cut(s)	135
SfaNI	GCATC	3 cut(s)	88, 520, 538
SfuI	TTCGAA	1 cut(s)	32
SinI	GGWCC	1 cut(s)	274
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	7 cut(s)	28, 137, 149, 321, 362, 543, 563
SsiI	CCGC	2 cut(s)	11, 38
SspMI	CTAG	1 cut(s)	290
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	2 cut(s)	368, 512
TaaI	ACNGT	1 cut(s)	483
TaqI	TCGA	5 cut(s)	6, 32, 168, 359, 436
TasI	AATT	7 cut(s)	28, 137, 149, 321, 362, 543, 563
TatI	WGTACW	1 cut(s)	342
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	2 cut(s)	324, 566
Tru9I	TTAA	2 cut(s)	324, 566
TscAI	CASTG	2 cut(s)	433, 540
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	3 cut(s)	87, 391, 493
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	468
TspGWI	ACGGA	2 cut(s)	63, 143
TspRI	CASTG	2 cut(s)	433, 540
VpaK11BI	GGWCC	1 cut(s)	274
XapI	RAATTY	3 cut(s)	137, 149, 362
XmnI	GAANNNNTTC	2 cut(s)	149, 174
XspI	CTAG	1 cut(s)	290
ZrmI	AGTACT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.