Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001628

Physical Location & Seq

Genomic Coordinates Forward (+)

24951528 .. 24956198

Gene Structure 4671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G019040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGTCGAGGCAGCTCAAATGGAGGACAATTCGAAACCGCAGAGGAACGGAAGTGACAATAATGGAGATCTCGCATTGGAGAATGGCAGCTCAGGCGATGCTCATGATCAGCTTGTGCAGATGGTCACGGAGCTCAAATTCCAGAACGAATTCCTCAAGTCTCAGATTGAAGGCTTTCAGAGTGTGCAACCAGCAGAACCGAGTGAAGCCGCTCAACAGAAGTTGGATCAAGAAATTAAAGAGCGTGAAGAGAAGTACTCTGATCTTGACTCGAAATTCACCAGGCTTCACAAACGAGCAAAGCAGCGTATTCAAGATGTTCAAAAGGAAAAAGATGACATTGAGGCTCGATTTCGTGAAGTAAATGAAAGAGCTGAGCGAGCATTATCCCAACAGTCAGCATTGCAGCAAGAGCTTGACAAAACCAGGCAACAAGCAAACGATGCACTGAAAGCAATTGATGCTGAGAGACAACAATTAAGAAGTGCAAATAATAAACTACGAGACAACCTTGAGGAATTGCGAAATGCATTACAACCAAAAGAGAGTGCTATCGAGGCACTGCAACATACAATTTCGGAGAAGGATCAGAGGCCACAGGCTACTGTTCGTCCCCATTTTCATTCAGATCCTGTGCTTGCTCCTGCCCAAGGTCATGGCTTCCGTTTTTATTCCCCACAAGCAGAGTTCGAGGATGAATTTCTCTTCGTGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005794 GO:0005802 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0031984 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048193 GO:0048285 GO:0051179 GO:0051234 GO:0051321 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098791 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRIP

Protein Analysis

238

Amino Acids

27.32

Weight (kDa)

5.08

Isoelectric Point (pI)

60.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66030 AT5G66030 AT5G66030 AT5G66030
fragaria_vesca	FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521
malus_domestica	MD02G1119300.v1.1 MD15G1233300.v1.1
prunus_persica	Prupe.7G179600_v2.0.a1 Prupe.7G179600_v2.0.a1
pyrus_communis	pycom02g09300 pycom05g12530 pycom15g20780
rosa_chinensis	RchiOBHm_Chr2g0097451 RchiOBHm_Chr2g0097461 RchiOBHm_Chr2g0097561 RchiOBHm_Chr2g0097581 RchiOBHm_Chr6g0253501
rosa_laevigata	RLG00000007707 RLG00000016726
rosa_multiflora	Rmu_sc0003151.1_g000017 Rmu_sc0005929.1_g000013 Rmu_sc0009080.1_g000004 Rmu_sc0023738.1_g000001 Rmu_sc0023972.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144680 Rroxscaffold_4G00289770
rosa_rugosa	Rorug02G0067100 Rorug02G0067200 Rorug02G0067300 Rorug02G0067400 Rorug05G0050700
rosa_samantha	Rh2AG113500 Rh2BG116600 Rh2CG118600 Rh2DG117600 Rh3AG216100 Rh3BG375000 Rh3CG269100 Rh3DG243100 Rh4BG210200 Rh4BG210300
rosa_wichuraiana	Rw2G008900 Rw2G019040 Rw3G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	212
AciI	CCGC	2 cut(s)	38, 210
AclWI	GGATC	3 cut(s)	234, 594, 623
AcsI	RAATTY	4 cut(s)	137, 149, 275, 698
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	650
AgsI	TTSAA	3 cut(s)	170, 314, 323
AjnI	CCWGG	2 cut(s)	281, 425
AluBI	AGCT	6 cut(s)	14, 90, 112, 133, 374, 415
AluI	AGCT	6 cut(s)	14, 90, 112, 133, 374, 415
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	3 cut(s)	165, 463, 498
AlwI	GGATC	3 cut(s)	234, 594, 623
AlwNI	CAGNNNCTG	1 cut(s)	632
AoxI	GGCC	1 cut(s)	593
ApeKI	GCWGC	4 cut(s)	11, 87, 304, 406
ApoI	RAATTY	4 cut(s)	137, 149, 275, 698
Asp700I	GAANNNNTTC	2 cut(s)	149, 174
AsuHPI	GGTGA	1 cut(s)	271
AsuII	TTCGAA	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	4 cut(s)	23, 99, 316, 418
BccI	CCATC	1 cut(s)	115
BciT130I	CCWGG	2 cut(s)	283, 427
BclI	TGATCA	1 cut(s)	106
BcoDI	GTCTC	3 cut(s)	165, 463, 498
BglII	AGATCT	1 cut(s)	67
BisI	GCNGC	5 cut(s)	12, 88, 210, 305, 407
BlpI	GCTNAGC	1 cut(s)	375
BlsI	GCNGC	5 cut(s)	13, 89, 211, 306, 408
BmcAI	AGTACT	1 cut(s)	257
Bme1390I	CCNGG	2 cut(s)	283, 427
BmrFI	CCNGG	2 cut(s)	283, 427
BmsI	GCATC	3 cut(s)	88, 433, 451
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
Bpu10I	CCTNAGC	1 cut(s)	91
Bpu1102I	GCTNAGC	1 cut(s)	375
Bpu14I	TTCGAA	1 cut(s)	32
BpuEI	CTTGAG	2 cut(s)	140, 533
BsaJI	CCNNGG	1 cut(s)	649
Bsc4I	CCNNNNNNNGG	1 cut(s)	650
Bse3DI	GCAATG	1 cut(s)	401
BseBI	CCWGG	2 cut(s)	283, 427
BseDI	CCNNGG	1 cut(s)	649
BseGI	GGATG	1 cut(s)	700
BseLI	CCNNNNNNNGG	1 cut(s)	650
BseMI	GCAATG	1 cut(s)	401
BseMII	CTCAG	4 cut(s)	105, 176, 366, 456
BseXI	GCAGC	4 cut(s)	23, 99, 316, 418
BsgI	GTGCAG	1 cut(s)	137
BshFI	GGCC	1 cut(s)	595
BsiHKAI	GWGCWC	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	597
BslI	CCNNNNNNNGG	1 cut(s)	650
BsmAI	GTCTC	3 cut(s)	165, 463, 498
BsmFI	GGGAC	1 cut(s)	597
BsnI	GGCC	1 cut(s)	595
Bsp119I	TTCGAA	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	6 cut(s)	67, 106, 226, 262, 586, 628
Bsp1720I	GCTNAGC	1 cut(s)	375
BspACI	CCGC	2 cut(s)	38, 210
BspANI	GGCC	1 cut(s)	595
BspCNI	CTCAG	4 cut(s)	104, 175, 367, 457
BspHI	TCATGA	1 cut(s)	103
BspPI	GGATC	3 cut(s)	234, 594, 623
BspT104I	TTCGAA	1 cut(s)	32
BsrBI	CCGCTC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	649
BssMI	GATC	6 cut(s)	67, 106, 226, 262, 586, 628
BssT1I	CCWWGG	1 cut(s)	649
Bst2UI	CCWGG	2 cut(s)	283, 427
Bst4CI	ACNGT	2 cut(s)	396, 607
Bst6I	CTCTTC	2 cut(s)	243, 710
BstAPI	GCANNNNNTGC	2 cut(s)	443, 461
BstBI	TTCGAA	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	381, 639
BstDEI	CTNAG	5 cut(s)	91, 162, 375, 465, 714
BstENI	CCTNNNNNAGG	1 cut(s)	648
BstF5I	GGATG	1 cut(s)	700
BstKTI	GATC	6 cut(s)	70, 109, 229, 265, 589, 631
BstMAI	GTCTC	3 cut(s)	165, 463, 498
BstMBI	GATC	6 cut(s)	67, 106, 226, 262, 586, 628
BstMWI	GCNNNNNNNGC	7 cut(s)	93, 380, 412, 443, 452, 461, 557
BstNI	CCWGG	2 cut(s)	283, 427
BstSCI	CCNGG	2 cut(s)	281, 425
BstV1I	GCAGC	4 cut(s)	23, 99, 316, 418
BstX2I	RGATCY	2 cut(s)	67, 628
BstXI	CCANNNNNNTGG	1 cut(s)	656
BstYI	RGATCY	2 cut(s)	67, 628
BsuRI	GGCC	1 cut(s)	595
BtgZI	GCGATG	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	700
BtsI	GCAGTG	1 cut(s)	560
BtsIMutI	CAGTG	2 cut(s)	446, 560
Cac8I	GCNNGC	2 cut(s)	381, 639
CaiI	CAGNNNCTG	1 cut(s)	632
CciI	TCATGA	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	2 cut(s)	104, 656
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	5 cut(s)	91, 162, 375, 465, 714
DpnI	GATC	6 cut(s)	69, 108, 228, 264, 588, 630
DpnII	GATC	6 cut(s)	67, 106, 226, 262, 586, 628
Eam1104I	CTCTTC	2 cut(s)	243, 710
EarI	CTCTTC	2 cut(s)	243, 710
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	649
Eco24I	GRGCYC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	133
EcoNI	CCTNNNNNAGG	1 cut(s)	648
EcoRI	GAATTC	1 cut(s)	149
EcoRII	CCWGG	2 cut(s)	281, 425
EcoT14I	CCWWGG	1 cut(s)	649
EcoT22I	ATGCAT	1 cut(s)	532
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	649
FaeI	CATG	2 cut(s)	107, 659
FaiI	YATR	3 cut(s)	105, 570, 657
FaqI	GGGAC	1 cut(s)	597
FatI	CATG	2 cut(s)	103, 655
FbaI	TGATCA	1 cut(s)	106
Fnu4HI	GCNGC	5 cut(s)	12, 88, 210, 305, 407
FokI	GGATG	1 cut(s)	707
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	5 cut(s)	12, 88, 210, 305, 407
GluI	GCNGC	5 cut(s)	12, 88, 210, 305, 407
HaeIII	GGCC	1 cut(s)	595
Hin1II	CATG	2 cut(s)	107, 659
HinfI	GANTC	1 cut(s)	269
HphI	GGTGA	1 cut(s)	271
Hpy188I	TCNGA	6 cut(s)	165, 180, 262, 580, 591, 628
Hpy188III	TCNNGA	6 cut(s)	104, 142, 230, 266, 314, 356
HpyAV	CCTTC	2 cut(s)	164, 577
HpyCH4III	ACNGT	2 cut(s)	396, 607
HpyCH4V	TGCA	7 cut(s)	118, 187, 406, 446, 488, 530, 565
HpyF10VI	GCNNNNNNNGC	7 cut(s)	93, 380, 412, 443, 452, 461, 557
HpyF3I	CTNAG	5 cut(s)	91, 162, 375, 465, 714
Hsp92II	CATG	2 cut(s)	107, 659
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	6 cut(s)	67, 106, 226, 262, 586, 628
LmnI	GCTCC	2 cut(s)	130, 646
Lsp1109I	GCAGC	4 cut(s)	23, 99, 316, 418
LweI	GCATC	3 cut(s)	88, 433, 451
MaeIII	GTNAC	2 cut(s)	53, 124
MalI	GATC	6 cut(s)	69, 108, 228, 264, 588, 630
MbiI	CCGCTC	1 cut(s)	212
MboI	GATC	6 cut(s)	67, 106, 226, 262, 586, 628
MboII	GAAGA	2 cut(s)	260, 697
MfeI	CAATTG	1 cut(s)	456
MflI	RGATCY	2 cut(s)	67, 628
MhlI	GDGCHC	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	8 cut(s)	16, 36, 164, 337, 508, 550, 585, 685
Mph1103I	ATGCAT	1 cut(s)	532
MroXI	GAANNNNTTC	2 cut(s)	149, 174
MseI	TTAA	2 cut(s)	237, 479
MspR9I	CCNGG	2 cut(s)	283, 427
MunI	CAATTG	1 cut(s)	456
MvaI	CCWGG	2 cut(s)	283, 427
MwoI	GCNNNNNNNGC	7 cut(s)	93, 380, 412, 443, 452, 461, 557
NdeII	GATC	6 cut(s)	67, 106, 226, 262, 586, 628
NlaIII	CATG	2 cut(s)	107, 659
NmuCI	GTSAC	2 cut(s)	53, 124
NsiI	ATGCAT	1 cut(s)	532
NspV	TTCGAA	1 cut(s)	32
PagI	TCATGA	1 cut(s)	103
PdmI	GAANNNNTTC	2 cut(s)	149, 174
PkrI	GCNGC	5 cut(s)	13, 89, 211, 306, 408
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
Psp124BI	GAGCTC	1 cut(s)	135
Psp6I	CCWGG	2 cut(s)	281, 425
PspGI	CCWGG	2 cut(s)	281, 425
PstNI	CAGNNNCTG	1 cut(s)	632
PsuI	RGATCY	2 cut(s)	67, 628
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	237, 479
SatI	GCNGC	5 cut(s)	12, 88, 210, 305, 407
Sau3AI	GATC	6 cut(s)	67, 106, 226, 262, 586, 628
ScaI	AGTACT	1 cut(s)	257
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	2 cut(s)	283, 427
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	8 cut(s)	16, 92, 114, 135, 376, 417, 513, 655
SfaNI	GCATC	3 cut(s)	88, 433, 451
SfuI	TTCGAA	1 cut(s)	32
SmlI	CTYRAG	2 cut(s)	155, 512
SmoI	CTYRAG	2 cut(s)	155, 512
SsiI	CCGC	2 cut(s)	38, 210
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	2 cut(s)	281, 425
StyI	CCWWGG	1 cut(s)	649
TaaI	ACNGT	2 cut(s)	396, 607
TaqI	TCGA	6 cut(s)	6, 32, 272, 349, 555, 690
TatI	WGTACW	1 cut(s)	255
TauI	GCSGC	1 cut(s)	212
Tru1I	TTAA	2 cut(s)	237, 479
Tru9I	TTAA	2 cut(s)	237, 479
TscAI	CASTG	2 cut(s)	453, 567
TseFI	GTSAC	2 cut(s)	53, 124
TseI	GCWGC	4 cut(s)	11, 87, 304, 406
Tsp45I	GTSAC	2 cut(s)	53, 124
TspDTI	ATGAA	3 cut(s)	381, 611, 711
TspGWI	ACGGA	3 cut(s)	63, 143, 653
TspRI	CASTG	2 cut(s)	453, 567
XagI	CCTNNNNNAGG	1 cut(s)	648
XapI	RAATTY	4 cut(s)	137, 149, 275, 698
XmnI	GAANNNNTTC	2 cut(s)	149, 174
ZrmI	AGTACT	1 cut(s)	257
Zsp2I	ATGCAT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.