RchiOBHm_Chr2g0097461

golgin-97, RanBP2alpha,Imh1p and p230/golgin-245

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
10070744 .. 10075364
4621 bp
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UTR
Exon/CDS
Intron
PRQ47233

Sequence Viewer

Length: 1638 bp
ATGGCCGAGGCGGCTCAAATGGAGGACAATTGGAAACCGCAGAGGCACGGAAGCGATAGCAATGGAGATCTGGCATTGGAGAATGGCAGCTCAGGCGATGCTCATGATCAGCTTGTGCAGATGGTCACGGAGCTCAAATTGCAGAACGAATTCCTCAAGTCTCAGATTGAAGGCTTCAGAGTTGAACGGCTCCGGCAGAGCATTGAGTCATTGAATTCGCAGCTTGAGGAAGAGAAGCAAACACGAGCTGCGGCAGAAGAGGCTCTGAAGCACCTTAGAGAAGAACACTTGGAAGCTGATTCAAGAGCGCAGGACCTCTCTGCAAAGCTAGCTGAAGCTCAACAGAAGTTGGATCAAGAAATTAAAGAGCGTGAAGAGAAGTACTCTGATCTTGACTCGAAATTCACCAGGCTTCACAAACGAGCAAAGCAGCGTATTCAAGATGTTCAAAAGGAAAAAGATGACATTGAGGCTAGATTTCGTGAAGTAAATGAAAGAGCTGAGCGAGCATTATCCCAACAGTCAGCATTGCAGCAAGAGCTTGACAAAACCAGGCAACAAGCAAACGATGCACTGAAAGCAATTGATGCTGAGAGACAACAACTAAGAAGTGCAAATAATAAACTACGAGACAACCTGGAGGAATTGCGAAATGCACTGCAACCAAAAGAGAGTGCTATCGAGGCACTGCAACATACAATTTCGGAGAAGGATCAGATGTTAGAAGATATGCGAGGTTTGCTTCAGGCTGCTGAGGAAAAAAGGCAATCTTCATTAGCTGAACTCTCTGCTAAACATCAGAAGAATTTGGAGAGTTTGGAAGCGCAACTTGCGGATGCATCATCCGATAGAAATAAAGCAACTGAAACTATTTCTTCACTGCAGTCAAAGATTGCAGAGATGGAAGCGGCATCAACGGGTGAGGCAGCAAGGCTTAGAGCTGCTGCAGAAACTGTAAAAGGAGAGCTTGCTCACCTTAAACATGAGCATGAGAAAGAAAAGGAGAGCTGGGAAGCTGCCTCTCGAGGACTGAAAACAAAGCTGGAAGTCACTGAGAGCAATCGGATATGTGCTGAAATTGAAGTAGCCAAAATGAGAAGTCAGCTGGAATCAGAGGTGTCTGCACAAACCCAAATGCTTGATGCGAGAGATGCTGAACTTGCAACTGCCAAGGAGGAGATCAACCGCCTTAAAAATGAATTTTCTTCTTATAAAGTACGTGCTCATGCACTTCTCCAAAAGAAGGATGCAGATCTAGCTGCAGCTAAAGACTCTGAACAAGTTACAGCTCTTGAGGAAGCACTAAAAGAAGCTGAAAAAGAAGTTTCGTCTCTGAGTGCTGAAAGAGATAAGGCCCTTCAGGATCTTCAGGATGCCTTGACTAATTATAATAAAGAACTAGCAGAAAGAGATGCAGCTCTTAATGATACCATGCAGCAGATCAAGAGCTTAGAAAAAAAGCTCGAGTCTACTAATGCCCATCACCGATCCGCCAAAGAAGCATGGGAAGTTAACCTTAGTAATTTGGAAGAAACATGGCGGGCAAGATGTGAAACATTAAGAGCTCAAAATGAAGCATCTTCTGGAGAAGACATAAAAAAGAATTGGAAGAGCTCAAATTACGGTATAAAAAATTGA

Protein Analysis

545

Amino Acids

61.77

Weight (kDa)

5.23

Isoelectric Point (pI)

48.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Golgin_A5 PF09787 394 - 525 8.9e-06 Golgin subfamily A member 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1212, 1389
AccI GTMKAC 1 cut(s) 1469
AciI CCGC 8 cut(s) 11, 38, 251, 833, 908, 1186, 1491, 1540
AclWI GGATC 4 cut(s) 360, 720, 1371, 1482
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 5 cut(s) 149, 214, 401, 805, 1199
AcuI CTGAAG 6 cut(s) 160, 287, 354, 728, 1343, 1352
AfaI GTAC 2 cut(s) 383, 1218
AfiI CCNNNNNNNGG 1 cut(s) 1243
AgsI TTSAA 7 cut(s) 170, 185, 214, 303, 440, 449, 1082
AjnI CCWGG 3 cut(s) 407, 551, 636
Alw21I GWGCWC 4 cut(s) 135, 1225, 1567, 1616
Alw26I GTCTC 4 cut(s) 165, 589, 624, 1335
AlwI GGATC 4 cut(s) 360, 720, 1371, 1482
AlwNI CAGNNNCTG 1 cut(s) 953
Ama87I CYCGRG 2 cut(s) 1023, 1463
AoxI GGCC 2 cut(s) 3, 1353
ApoI RAATTY 5 cut(s) 149, 214, 401, 805, 1199
Asp700I GAANNNNTTC 1 cut(s) 149
AspLEI GCGC 2 cut(s) 310, 826
AspS9I GGNCC 2 cut(s) 313, 1354
AsuHPI GGTGA 4 cut(s) 397, 932, 965, 1475
AsuNHI GCTAGC 1 cut(s) 328
AvaI CYCGRG 2 cut(s) 1023, 1463
AvaII GGWCC 1 cut(s) 313
BanII GRGCYC 3 cut(s) 135, 1567, 1616
BauI CACGAG 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 1596
Bbv12I GWGCWC 4 cut(s) 135, 1225, 1567, 1616
BbvCI CCTCAGC 1 cut(s) 753
BccI CCATC 3 cut(s) 115, 895, 1488
BceAI ACGGC 1 cut(s) 203
BciT130I CCWGG 3 cut(s) 409, 553, 638
BclI TGATCA 1 cut(s) 106
BcoDI GTCTC 4 cut(s) 165, 589, 624, 1335
BfaI CTAG 4 cut(s) 329, 474, 1256, 1400
BfmI CTRYAG 3 cut(s) 881, 945, 1260
BglI GCCNNNNNGGC 1 cut(s) 11
BglII AGATCT 2 cut(s) 67, 1252
BlpI GCTNAGC 1 cut(s) 501
BmcAI AGTACT 1 cut(s) 383
Bme1390I CCNGG 3 cut(s) 409, 553, 638
Bme18I GGWCC 1 cut(s) 313
BmeT110I CYCGRG 2 cut(s) 1023, 1463
BmgT120I GGNCC 2 cut(s) 313, 1354
BmiI GGNNCC 1 cut(s) 191
BmrFI CCNGG 3 cut(s) 409, 553, 638
BmtI GCTAGC 1 cut(s) 332
BpiI GAAGAC 1 cut(s) 1596
BplI GAGNNNNNCTC 2 cut(s) 368, 400
BpmI CTGGAG 2 cut(s) 659, 1605
Bpu10I CCTNAGC 2 cut(s) 91, 753
Bpu1102I GCTNAGC 1 cut(s) 501
BpuEI CTTGAG 3 cut(s) 140, 245, 1313
BsaAI YACGTR 1 cut(s) 1220
BsaBI GATNNNNATC 1 cut(s) 1251
BsaJI CCNNGG 2 cut(s) 6, 1170
Bsc4I CCNNNNNNNGG 1 cut(s) 1243
Bse3DI GCAATG 2 cut(s) 67, 527
Bse8I GATNNNNATC 1 cut(s) 1251
BseBI CCWGG 3 cut(s) 409, 553, 638
BseDI CCNNGG 2 cut(s) 6, 1170
BseGI GGATG 4 cut(s) 841, 842, 1252, 1378
BseJI GATNNNNATC 1 cut(s) 1251
BseLI CCNNNNNNNGG 1 cut(s) 1243
BseMI GCAATG 2 cut(s) 67, 527
BseMII CTCAG 7 cut(s) 105, 176, 492, 582, 744, 1044, 1325
BseRI GAGGAG 1 cut(s) 1190
BseYI CCCAGC 1 cut(s) 1008
BsgI GTGCAG 2 cut(s) 137, 1107
BshFI GGCC 2 cut(s) 5, 1355
BsiHKAI GWGCWC 4 cut(s) 135, 1225, 1567, 1616
BsiHKCI CYCGRG 2 cut(s) 1023, 1463
BsiSI CCGG 1 cut(s) 193
BslI CCNNNNNNNGG 1 cut(s) 1243
BsmAI GTCTC 4 cut(s) 165, 589, 624, 1335
BsmBI CGTCTC 1 cut(s) 1335
BsnI GGCC 2 cut(s) 5, 1355
BsoBI CYCGRG 2 cut(s) 1023, 1463
Bsp1286I GDGCHC 4 cut(s) 135, 1225, 1567, 1616
Bsp1720I GCTNAGC 1 cut(s) 501
BspACI CCGC 8 cut(s) 11, 38, 251, 833, 908, 1186, 1491, 1540
BspANI GGCC 2 cut(s) 5, 1355
BspCNI CTCAG 7 cut(s) 104, 175, 493, 583, 745, 1045, 1326
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 191
BspMAI CTGCAG 3 cut(s) 885, 949, 1264
BspOI GCTAGC 1 cut(s) 332
BspPI GGATC 4 cut(s) 360, 720, 1371, 1482
BspQI GCTCTTC 1 cut(s) 1604
BsrDI GCAATG 2 cut(s) 67, 527
BssECI CCNNGG 2 cut(s) 6, 1170
BssSI CACGAG 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 1170
Bst2BI CACGAG 1 cut(s) 243
Bst2UI CCWGG 3 cut(s) 409, 553, 638
Bst4CI ACNGT 3 cut(s) 522, 955, 1625
Bst6I CTCTTC 4 cut(s) 225, 252, 369, 1604
BstAPI GCANNNNNTGC 2 cut(s) 569, 587
BstBAI YACGTR 1 cut(s) 1220
BstC8I GCNNGC 4 cut(s) 330, 507, 969, 1542
BstF5I GGATG 4 cut(s) 841, 842, 1252, 1378
BstHHI GCGC 2 cut(s) 310, 826
BstMAI GTCTC 4 cut(s) 165, 589, 624, 1335
BstNI CCWGG 3 cut(s) 409, 553, 638
BstSCI CCNGG 3 cut(s) 407, 551, 636
BstSFI CTRYAG 3 cut(s) 881, 945, 1260
BstV2I GAAGAC 1 cut(s) 1596
BstX2I RGATCY 3 cut(s) 67, 1252, 1363
BstYI RGATCY 3 cut(s) 67, 1252, 1363
BsuRI GGCC 2 cut(s) 5, 1355
BtgZI GCGATG 1 cut(s) 111
BtsCI GGATG 4 cut(s) 841, 842, 1252, 1378
BtsI GCAGTG 3 cut(s) 656, 686, 878
BtsIMutI CAGTG 5 cut(s) 572, 656, 686, 878, 1050
Cac8I GCNNGC 4 cut(s) 330, 507, 969, 1542
CaiI CAGNNNCTG 1 cut(s) 953
CciI TCATGA 1 cut(s) 103
CfoI GCGC 2 cut(s) 310, 826
Cfr13I GGNCC 2 cut(s) 313, 1354
Csp6I GTAC 2 cut(s) 382, 1217
CviAII CATG 7 cut(s) 104, 983, 989, 1226, 1432, 1503, 1536
CviQI GTAC 2 cut(s) 382, 1217
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 225, 252, 369, 1604
EarI CTCTTC 4 cut(s) 225, 252, 369, 1604
EciI GGCGGA 1 cut(s) 1480
Ecl136II GAGCTC 3 cut(s) 133, 1565, 1614
Eco130I CCWWGG 1 cut(s) 1170
Eco24I GRGCYC 3 cut(s) 135, 1567, 1616
Eco47I GGWCC 1 cut(s) 313
Eco53kI GAGCTC 3 cut(s) 133, 1565, 1614
Eco57I CTGAAG 6 cut(s) 160, 287, 354, 728, 1343, 1352
Eco88I CYCGRG 2 cut(s) 1023, 1463
EcoICRI GAGCTC 3 cut(s) 133, 1565, 1614
EcoO109I RGGNCCY 2 cut(s) 313, 1354
EcoRI GAATTC 2 cut(s) 149, 214
EcoRII CCWGG 3 cut(s) 407, 551, 636
EcoT14I CCWWGG 1 cut(s) 1170
EcoT22I ATGCAT 1 cut(s) 841
EcoT38I GRGCYC 3 cut(s) 135, 1567, 1616
ErhI CCWWGG 1 cut(s) 1170
Esp3I CGTCTC 1 cut(s) 1335
FaeI CATG 7 cut(s) 107, 986, 992, 1229, 1435, 1506, 1539
FalI AAGNNNNNCTT 8 cut(s) 754, 786, 813, 845, 951, 983, 1500, 1532
FatI CATG 7 cut(s) 103, 982, 988, 1225, 1431, 1502, 1535
FauI CCCGC 1 cut(s) 1533
FbaI TGATCA 1 cut(s) 106
FblI GTMKAC 1 cut(s) 1469
FokI GGATG 4 cut(s) 829, 848, 1259, 1385
FriOI GRGCYC 3 cut(s) 135, 1567, 1616
FspBI CTAG 4 cut(s) 329, 474, 1256, 1400
GlaI GCGC 2 cut(s) 309, 825
GsaI CCCAGC 1 cut(s) 1012
GsuI CTGGAG 2 cut(s) 659, 1605
HaeIII GGCC 2 cut(s) 5, 1355
HapII CCGG 1 cut(s) 193
HhaI GCGC 2 cut(s) 310, 826
Hin1II CATG 7 cut(s) 107, 986, 992, 1229, 1435, 1506, 1539
Hin6I GCGC 2 cut(s) 308, 824
HinP1I GCGC 2 cut(s) 308, 824
HincII GTYRAC 1 cut(s) 1513
HindII GTYRAC 1 cut(s) 1513
HinfI GANTC 6 cut(s) 206, 299, 395, 1109, 1271, 1466
HpaI GTTAAC 1 cut(s) 1513
HpaII CCGG 1 cut(s) 193
HphI GGTGA 4 cut(s) 397, 932, 965, 1475
Hpy166II GTNNAC 2 cut(s) 1470, 1513
Hpy8I GTNNAC 2 cut(s) 1470, 1513
HpyAV CCTTC 4 cut(s) 164, 703, 1237, 1367
HpyCH4III ACNGT 3 cut(s) 522, 955, 1625
HpyCH4IV ACGT 1 cut(s) 1219
HpySE526I ACGT 1 cut(s) 1219
Hsp92II CATG 7 cut(s) 107, 986, 992, 1229, 1435, 1506, 1539
HspAI GCGC 2 cut(s) 308, 824
Ksp22I TGATCA 1 cut(s) 106
KspAI GTTAAC 1 cut(s) 1513
LguI GCTCTTC 1 cut(s) 1604
LmnI GCTCC 2 cut(s) 130, 195
MaeI CTAG 4 cut(s) 329, 474, 1256, 1400
MaeII ACGT 1 cut(s) 1219
MaeIII GTNAC 3 cut(s) 124, 1048, 1282
MfeI CAATTG 2 cut(s) 28, 582
MflI RGATCY 3 cut(s) 67, 1252, 1363
MhlI GDGCHC 4 cut(s) 135, 1225, 1567, 1616
MlyI GAGTC 4 cut(s) 215, 389, 1265, 1475
MmeI TCCRAC 1 cut(s) 330
Mph1103I ATGCAT 1 cut(s) 841
MroXI GAANNNNTTC 1 cut(s) 149
MseI TTAA 6 cut(s) 363, 978, 1191, 1422, 1512, 1559
MslI CAYNNNNRTG 1 cut(s) 987
MspA1I CMGCKG 1 cut(s) 1105
MspI CCGG 1 cut(s) 193
MspR9I CCNGG 3 cut(s) 409, 553, 638
MunI CAATTG 2 cut(s) 28, 582
MvaI CCWGG 3 cut(s) 409, 553, 638
NheI GCTAGC 1 cut(s) 328
NlaIII CATG 7 cut(s) 107, 986, 992, 1229, 1435, 1506, 1539
NlaIV GGNNCC 1 cut(s) 191
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 2 cut(s) 124, 1048
NsiI ATGCAT 1 cut(s) 841
PaeR7I CTCGAG 2 cut(s) 1023, 1463
PagI TCATGA 1 cut(s) 103
PciSI GCTCTTC 1 cut(s) 1604
PdmI GAANNNNTTC 1 cut(s) 149
PfeI GAWTC 2 cut(s) 299, 1109
PleI GAGTC 4 cut(s) 214, 389, 1265, 1474
PpsI GAGTC 4 cut(s) 214, 389, 1265, 1474
Ppu21I YACGTR 1 cut(s) 1220
PpuMI RGGWCCY 1 cut(s) 313
PsiI TTATAA 2 cut(s) 1212, 1389
Psp124BI GAGCTC 3 cut(s) 135, 1567, 1616
Psp5II RGGWCCY 1 cut(s) 313
Psp6I CCWGG 3 cut(s) 407, 551, 636
PspFI CCCAGC 1 cut(s) 1008
PspGI CCWGG 3 cut(s) 407, 551, 636
PspN4I GGNNCC 1 cut(s) 191
PspPI GGNCC 2 cut(s) 313, 1354
PspPPI RGGWCCY 1 cut(s) 313
PspXI VCTCGAGB 1 cut(s) 1463
PstI CTGCAG 3 cut(s) 885, 949, 1264
PstNI CAGNNNCTG 1 cut(s) 953
PsuI RGATCY 3 cut(s) 67, 1252, 1363
PvuII CAGCTG 1 cut(s) 1105
RsaI GTAC 2 cut(s) 383, 1218
RsaNI GTAC 2 cut(s) 382, 1217
RseI CAYNNNNRTG 1 cut(s) 987
SacI GAGCTC 3 cut(s) 135, 1567, 1616
SapI GCTCTTC 1 cut(s) 1604
SaqAI TTAA 6 cut(s) 363, 978, 1191, 1422, 1512, 1559
Sau96I GGNCC 2 cut(s) 313, 1354
ScaI AGTACT 1 cut(s) 383
SchI GAGTC 4 cut(s) 215, 389, 1265, 1475
ScrFI CCNGG 3 cut(s) 409, 553, 638
SduI GDGCHC 4 cut(s) 135, 1225, 1567, 1616
SfcI CTRYAG 3 cut(s) 881, 945, 1260
Sfr274I CTCGAG 2 cut(s) 1023, 1463
SinI GGWCC 1 cut(s) 313
SlaI CTCGAG 2 cut(s) 1023, 1463
SmiMI CAYNNNNRTG 1 cut(s) 987
SmlI CTYRAG 5 cut(s) 155, 224, 1023, 1292, 1463
SmoI CTYRAG 5 cut(s) 155, 224, 1023, 1292, 1463
SsiI CCGC 8 cut(s) 11, 38, 251, 833, 908, 1186, 1491, 1540
SspMI CTAG 4 cut(s) 329, 474, 1256, 1400
SstI GAGCTC 3 cut(s) 135, 1567, 1616
StyD4I CCNGG 3 cut(s) 407, 551, 636
StyI CCWWGG 1 cut(s) 1170
TaaI ACNGT 3 cut(s) 522, 955, 1625
TaiI ACGT 1 cut(s) 1222
TaqI TCGA 4 cut(s) 398, 681, 1024, 1464
TatI WGTACW 1 cut(s) 381
TauI GCSGC 3 cut(s) 14, 254, 911
TfiI GAWTC 2 cut(s) 299, 1109
Tru1I TTAA 6 cut(s) 363, 978, 1191, 1422, 1512, 1559
Tru9I TTAA 6 cut(s) 363, 978, 1191, 1422, 1512, 1559
TscAI CASTG 5 cut(s) 579, 663, 693, 885, 1057
TseFI GTSAC 2 cut(s) 124, 1048
Tsp45I GTSAC 2 cut(s) 124, 1048
TspDTI ATGAA 4 cut(s) 507, 762, 1212, 1587
TspGWI ACGGA 2 cut(s) 63, 143
TspRI CASTG 5 cut(s) 579, 663, 693, 885, 1057
VpaK11BI GGWCC 1 cut(s) 313
XapI RAATTY 5 cut(s) 149, 214, 401, 805, 1199
XhoI CTCGAG 2 cut(s) 1023, 1463
XmiI GTMKAC 1 cut(s) 1469
XmnI GAANNNNTTC 1 cut(s) 149
XspI CTAG 4 cut(s) 329, 474, 1256, 1400
ZrmI AGTACT 1 cut(s) 383
Zsp2I ATGCAT 1 cut(s) 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.