Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001628

Physical Location & Seq

Genomic Coordinates Forward (+)

47654948 .. 47696051

Gene Structure 41104 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG375000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGGTGATTCGAAAGGTTTGATTTTGGGGCTTCACAAACGAGCAAAGCAGCCTATTCAAGATGTTCAAAAGGAAAAAGATGACATTGAGGCTCGATTTCGTGAAGTAAATGAAAGAGCTGAGCGAGCATTATCCCAACAGTCAGCATTGCAGCAAGAGCTTGACAAAACCAGGCAGCAAGCAAACGATGCACTGAAAGCAATTGATGCTGAGAGACAACAATTAAGAAGTGCAAATAATAAACTACGAGACAACCTGGAGGAATTGCGAAATGCATTGCAACCAAAAGAGAGTGCTATCGAGGCACAGCAACATACAATTTCGGAGAAGGATCAGCATGCTGCCATCATTGACGCTGCACCGTCACGCCGCTGCCATACCGATTCCTCGCCGCGTCGATCTTCTAGTCTGAACCGAGTTGGCAAAGACACGGGGCCTCCTACATCTGCCGCCGCTCCTCAAAATCTCAAGACTCCTCCGTCGAGTCCAGTTGCCTCCGCCGAGCCTTCTGCTTCCGCCACTGCCACTCCATCCCTCTCGGCCTCTCCCAAGCCATTGTCTCCATCTCCTACAGCACCTCTTATTGAGCGTGACTCATCTCGCGGTACCAAGCGCAGCCGTGCAGCTACTTCATCTCCCAGACCCTCCAAGCCTCTCAACAACTCTCGCAAGTCTGTGCCCCAGAAATCGGCCTCATCTCAAGTCTCCAAGCAGCTTGCCTCCCTGACATGTAAGGTCTCTTCTGAAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005794 GO:0005802 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0031984 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048193 GO:0048285 GO:0051179 GO:0051234 GO:0051321 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098791 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRIP

Protein Analysis

250

Amino Acids

26.93

Weight (kDa)

9.96

Isoelectric Point (pI)

83.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66030 AT5G66030 AT5G66030 AT5G66030
fragaria_vesca	FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521
malus_domestica	MD02G1119300.v1.1 MD15G1233300.v1.1
prunus_persica	Prupe.7G179600_v2.0.a1 Prupe.7G179600_v2.0.a1
pyrus_communis	pycom02g09300 pycom05g12530 pycom15g20780
rosa_chinensis	RchiOBHm_Chr2g0097451 RchiOBHm_Chr2g0097461 RchiOBHm_Chr2g0097561 RchiOBHm_Chr2g0097581 RchiOBHm_Chr6g0253501
rosa_laevigata	RLG00000007707 RLG00000016726
rosa_multiflora	Rmu_sc0003151.1_g000017 Rmu_sc0005929.1_g000013 Rmu_sc0009080.1_g000004 Rmu_sc0023738.1_g000001 Rmu_sc0023972.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144680 Rroxscaffold_4G00289770
rosa_rugosa	Rorug02G0067100 Rorug02G0067200 Rorug02G0067300 Rorug02G0067400 Rorug05G0050700
rosa_samantha	Rh2AG113500 Rh2BG116600 Rh2CG118600 Rh2DG117600 Rh3AG216100 Rh3BG375000 Rh3CG269100 Rh3DG243100 Rh4BG210200 Rh4BG210300
rosa_wichuraiana	Rw2G008900 Rw2G019040 Rw3G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	478
Acc65I	GGTACC	1 cut(s)	605
AccB1I	GGYRCC	1 cut(s)	605
AccBSI	CCGCTC	1 cut(s)	455
AccII	CGCG	2 cut(s)	394, 603
AciI	CCGC	7 cut(s)	370, 392, 450, 453, 498, 516, 603
AclWI	GGATC	1 cut(s)	339
AfaI	GTAC	1 cut(s)	607
AfiI	CCNNNNNNNGG	1 cut(s)	688
AflIII	ACRYGT	1 cut(s)	728
AgsI	TTSAA	2 cut(s)	59, 68
AjnI	CCWGG	2 cut(s)	170, 255
AluBI	AGCT	4 cut(s)	119, 160, 626, 715
AluI	AGCT	4 cut(s)	119, 160, 626, 715
Alw26I	GTCTC	5 cut(s)	208, 243, 564, 709, 742
AlwI	GGATC	1 cut(s)	339
AoxI	GGCC	3 cut(s)	434, 540, 690
ApeKI	GCWGC	9 cut(s)	49, 151, 175, 341, 356, 372, 615, 623, 712
Asp718I	GGTACC	1 cut(s)	605
AspLEI	GCGC	1 cut(s)	615
AspS9I	GGNCC	1 cut(s)	434
AsuHPI	GGTGA	1 cut(s)	17
AsuII	TTCGAA	1 cut(s)	11
BaeGI	GKGCMC	1 cut(s)	681
BanI	GGYRCC	1 cut(s)	605
BarI	GAAGNNNNNNTAC	1 cut(s)	724
BbvI	GCAGC	9 cut(s)	61, 163, 187, 328, 343, 359, 627, 635, 724
BccI	CCATC	3 cut(s)	353, 538, 571
BceAI	ACGGC	1 cut(s)	603
BcgI	CGANNNNNNTGC	2 cut(s)	491, 525
BciT130I	CCWGG	2 cut(s)	172, 257
BcoDI	GTCTC	5 cut(s)	208, 243, 564, 709, 742
BfaI	CTAG	2 cut(s)	405, 751
BfmI	CTRYAG	1 cut(s)	570
BlpI	GCTNAGC	1 cut(s)	120
Bme1390I	CCNGG	2 cut(s)	172, 257
BmgT120I	GGNCC	1 cut(s)	434
BmiI	GGNNCC	2 cut(s)	435, 607
BmrFI	CCNGG	2 cut(s)	172, 257
BmsI	GCATC	2 cut(s)	178, 196
BplI	GAGNNNNNCTC	2 cut(s)	578, 610
BpmI	CTGGAG	1 cut(s)	278
Bpu1102I	GCTNAGC	1 cut(s)	120
Bpu14I	TTCGAA	1 cut(s)	11
BpuEI	CTTGAG	2 cut(s)	452, 684
BsaI	GGTCTC	1 cut(s)	742
BsaXI	ACNNNNNCTCC	6 cut(s)	421, 451, 511, 541, 619, 649
Bsc4I	CCNNNNNNNGG	1 cut(s)	688
Bse1I	ACTGG	1 cut(s)	488
Bse3DI	GCAATG	2 cut(s)	146, 275
BseBI	CCWGG	2 cut(s)	172, 257
BseGI	GGATG	1 cut(s)	530
BseLI	CCNNNNNNNGG	1 cut(s)	688
BseMI	GCAATG	2 cut(s)	146, 275
BseMII	CTCAG	2 cut(s)	111, 201
BseNI	ACTGG	1 cut(s)	488
BseRI	GAGGAG	2 cut(s)	447, 465
BseSI	GKGCMC	1 cut(s)	681
BseXI	GCAGC	9 cut(s)	61, 163, 187, 328, 343, 359, 627, 635, 724
BsgI	GTGCAG	2 cut(s)	342, 642
Bsh1236I	CGCG	2 cut(s)	394, 603
BshFI	GGCC	3 cut(s)	436, 542, 692
BshNI	GGYRCC	1 cut(s)	605
BslI	CCNNNNNNNGG	1 cut(s)	688
BsmAI	GTCTC	5 cut(s)	208, 243, 564, 709, 742
BsnI	GGCC	3 cut(s)	436, 542, 692
Bso31I	GGTCTC	1 cut(s)	742
Bsp119I	TTCGAA	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	681
Bsp143I	GATC	2 cut(s)	331, 398
Bsp1720I	GCTNAGC	1 cut(s)	120
BspACI	CCGC	7 cut(s)	370, 392, 450, 453, 498, 516, 603
BspANI	GGCC	3 cut(s)	436, 542, 692
BspCNI	CTCAG	2 cut(s)	112, 202
BspFNI	CGCG	2 cut(s)	394, 603
BspLI	GGNNCC	2 cut(s)	435, 607
BspPI	GGATC	1 cut(s)	339
BspT104I	TTCGAA	1 cut(s)	11
BspT107I	GGYRCC	1 cut(s)	605
BspTNI	GGTCTC	1 cut(s)	742
BsrBI	CCGCTC	1 cut(s)	455
BsrDI	GCAATG	2 cut(s)	146, 275
BsrI	ACTGG	1 cut(s)	488
BssMI	GATC	2 cut(s)	331, 398
Bst2UI	CCWGG	2 cut(s)	172, 257
Bst4CI	ACNGT	2 cut(s)	141, 363
Bst6I	CTCTTC	1 cut(s)	745
BstAPI	GCANNNNNTGC	2 cut(s)	188, 206
BstBI	TTCGAA	1 cut(s)	11
BstC8I	GCNNGC	4 cut(s)	126, 180, 339, 717
BstDEI	CTNAG	2 cut(s)	120, 210
BstF5I	GGATG	1 cut(s)	530
BstFNI	CGCG	2 cut(s)	394, 603
BstHHI	GCGC	1 cut(s)	615
BstKTI	GATC	2 cut(s)	334, 401
BstMAI	GTCTC	5 cut(s)	208, 243, 564, 709, 742
BstMBI	GATC	2 cut(s)	331, 398
BstMWI	GCNNNNNNNGC	6 cut(s)	125, 157, 188, 197, 206, 302
BstNI	CCWGG	2 cut(s)	172, 257
BstNSI	RCATGY	2 cut(s)	341, 732
BstSCI	CCNGG	2 cut(s)	170, 255
BstSFI	CTRYAG	1 cut(s)	570
BstSLI	GKGCMC	1 cut(s)	681
BstUI	CGCG	2 cut(s)	394, 603
BstV1I	GCAGC	9 cut(s)	61, 163, 187, 328, 343, 359, 627, 635, 724
BsuRI	GGCC	3 cut(s)	436, 542, 692
BtsCI	GGATG	1 cut(s)	530
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	2 cut(s)	191, 519
Cac8I	GCNNGC	4 cut(s)	126, 180, 339, 717
CfoI	GCGC	1 cut(s)	615
Cfr13I	GGNCC	1 cut(s)	434
CseI	GACGC	2 cut(s)	362, 383
Csp6I	GTAC	1 cut(s)	606
CviAII	CATG	2 cut(s)	338, 729
CviQI	GTAC	1 cut(s)	606
DdeI	CTNAG	2 cut(s)	120, 210
DpnI	GATC	2 cut(s)	333, 400
DpnII	GATC	2 cut(s)	331, 398
DrdI	GACNNNNNNGTC	1 cut(s)	478
DseDI	GACNNNNNNGTC	1 cut(s)	478
Eam1104I	CTCTTC	1 cut(s)	745
EarI	CTCTTC	1 cut(s)	745
EciI	GGCGGA	2 cut(s)	487, 505
Eco31I	GGTCTC	1 cut(s)	742
EcoO109I	RGGNCCY	1 cut(s)	434
EcoRII	CCWGG	2 cut(s)	170, 255
EcoT22I	ATGCAT	1 cut(s)	277
FaeI	CATG	2 cut(s)	341, 732
FaiI	YATR	4 cut(s)	315, 339, 378, 730
FatI	CATG	2 cut(s)	337, 728
FokI	GGATG	1 cut(s)	517
FspBI	CTAG	2 cut(s)	405, 751
GlaI	GCGC	1 cut(s)	614
GsuI	CTGGAG	1 cut(s)	278
HaeIII	GGCC	3 cut(s)	436, 542, 692
HgaI	GACGC	2 cut(s)	362, 383
HhaI	GCGC	1 cut(s)	615
Hin1II	CATG	2 cut(s)	341, 732
Hin6I	GCGC	1 cut(s)	613
HinP1I	GCGC	1 cut(s)	613
HinfI	GANTC	5 cut(s)	8, 383, 472, 484, 593
HphI	GGTGA	1 cut(s)	17
Hpy188I	TCNGA	3 cut(s)	325, 411, 745
Hpy188III	TCNNGA	3 cut(s)	59, 101, 469
Hpy99I	CGWCG	2 cut(s)	399, 484
HpyAV	CCTTC	2 cut(s)	322, 516
HpyCH4III	ACNGT	2 cut(s)	141, 363
HpyCH4V	TGCA	7 cut(s)	151, 191, 233, 275, 280, 359, 623
HpyF10VI	GCNNNNNNNGC	6 cut(s)	125, 157, 188, 197, 206, 302
HpyF3I	CTNAG	2 cut(s)	120, 210
Hsp92II	CATG	2 cut(s)	341, 732
HspAI	GCGC	1 cut(s)	613
KpnI	GGTACC	1 cut(s)	609
Kzo9I	GATC	2 cut(s)	331, 398
LmnI	GCTCC	1 cut(s)	460
LpnPI	CCDG	8 cut(s)	157, 184, 242, 269, 501, 652, 695, 737
Lsp1109I	GCAGC	9 cut(s)	61, 163, 187, 328, 343, 359, 627, 635, 724
LweI	GCATC	2 cut(s)	178, 196
MaeI	CTAG	2 cut(s)	405, 751
MaeIII	GTNAC	2 cut(s)	363, 590
MalI	GATC	2 cut(s)	333, 400
MbiI	CCGCTC	1 cut(s)	455
MboI	GATC	2 cut(s)	331, 398
MboII	GAAGA	2 cut(s)	393, 732
MfeI	CAATTG	1 cut(s)	201
MhlI	GDGCHC	1 cut(s)	681
MluCI	AATT	4 cut(s)	201, 221, 263, 318
MlyI	GAGTC	3 cut(s)	466, 493, 587
Mph1103I	ATGCAT	1 cut(s)	277
MseI	TTAA	1 cut(s)	224
MspA1I	CMGCKG	1 cut(s)	372
MspR9I	CCNGG	2 cut(s)	172, 257
MunI	CAATTG	1 cut(s)	201
MvaI	CCWGG	2 cut(s)	172, 257
MvnI	CGCG	2 cut(s)	394, 603
MwoI	GCNNNNNNNGC	6 cut(s)	125, 157, 188, 197, 206, 302
NdeII	GATC	2 cut(s)	331, 398
NlaIII	CATG	2 cut(s)	341, 732
NlaIV	GGNNCC	2 cut(s)	435, 607
NmeAIII	GCCGAG	2 cut(s)	518, 526
NmuCI	GTSAC	2 cut(s)	363, 590
NsiI	ATGCAT	1 cut(s)	277
NspI	RCATGY	2 cut(s)	341, 732
NspV	TTCGAA	1 cut(s)	11
PaeI	GCATGC	1 cut(s)	341
PciI	ACATGT	1 cut(s)	728
PfeI	GAWTC	2 cut(s)	8, 383
PleI	GAGTC	3 cut(s)	466, 492, 587
PpsI	GAGTC	3 cut(s)	466, 492, 587
PscI	ACATGT	1 cut(s)	728
Psp6I	CCWGG	2 cut(s)	170, 255
PspGI	CCWGG	2 cut(s)	170, 255
PspN4I	GGNNCC	2 cut(s)	435, 607
PspPI	GGNCC	1 cut(s)	434
RsaI	GTAC	1 cut(s)	607
RsaNI	GTAC	1 cut(s)	606
SaqAI	TTAA	1 cut(s)	224
Sau3AI	GATC	2 cut(s)	331, 398
Sau96I	GGNCC	1 cut(s)	434
SchI	GAGTC	3 cut(s)	466, 493, 587
ScrFI	CCNGG	2 cut(s)	172, 257
SduI	GDGCHC	1 cut(s)	681
SetI	ASST	8 cut(s)	19, 121, 162, 258, 580, 628, 717, 738
SfaNI	GCATC	2 cut(s)	178, 196
SfcI	CTRYAG	1 cut(s)	570
SfuI	TTCGAA	1 cut(s)	11
SmlI	CTYRAG	2 cut(s)	467, 699
SmoI	CTYRAG	2 cut(s)	467, 699
SphI	GCATGC	1 cut(s)	341
Sse9I	AATT	4 cut(s)	201, 221, 263, 318
SsiI	CCGC	7 cut(s)	370, 392, 450, 453, 498, 516, 603
SspMI	CTAG	2 cut(s)	405, 751
StyD4I	CCNGG	2 cut(s)	170, 255
TaaI	ACNGT	2 cut(s)	141, 363
TaqI	TCGA	5 cut(s)	11, 94, 300, 397, 482
TasI	AATT	4 cut(s)	201, 221, 263, 318
TauI	GCSGC	4 cut(s)	372, 394, 452, 455
TfiI	GAWTC	2 cut(s)	8, 383
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TscAI	CASTG	2 cut(s)	198, 526
TseFI	GTSAC	2 cut(s)	363, 590
TseI	GCWGC	9 cut(s)	49, 151, 175, 341, 356, 372, 615, 623, 712
Tsp45I	GTSAC	2 cut(s)	363, 590
TspDTI	ATGAA	2 cut(s)	126, 621
TspGWI	ACGGA	1 cut(s)	468
TspRI	CASTG	2 cut(s)	198, 526
XceI	RCATGY	2 cut(s)	341, 732
XspI	CTAG	2 cut(s)	405, 751
Zsp2I	ATGCAT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.