Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001628

Physical Location & Seq

Genomic Coordinates Reverse (-)

15940566 .. 15941189

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g12530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCCAACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGAAGTTGAAGTCTACAAAAAAGGAGTAGCCCAAATCCAGGCCCAAGCCATGCCCTCAACCCGCAATCCCTCTACTTTCTGTAGAATAGGTTTCTTCAGTCGCCAAACAGCCATGGCCGACGAAGCCAAAGCCAAAGGCAACGCCGCTTTCTCCTCCGGTGACTTTACCGCCGCCGTCAACCACTTCTCTGAAGCCATCGACACTCACGATCAACTCGTCCAGACGGTCATGGAGCTAAAATTGCAGAACGAATTCCTCAAGTCTCAGTTCGAAGGATCTCGGAATCTTCAACCGCCAGAGCCGGAAGGTGGCGAATCGGAGGAGGTGAAGCAGCTGCGGCAAACTATTGAATCGCTGAATGTGGAACTTTTGGAAGAGAAGCAAACGCGAGCTGCGGCGGAAGTGGCTCTGAAGCATCTTCAGGAATCGCACTTTGAAGCAGATTCCAGAGCTCAAGAGCTCTCTGTAAAGCTCGCTGAAGCTCGACAGAAGTTGGATCAAGAAATAAAAAAAAAAGCGGGAAGAGAAGTACTCCGATCTCGACTCGAAATTCACCCGGCTTCACAAACGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005794 GO:0005802 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0031984 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048193 GO:0048285 GO:0051179 GO:0051234 GO:0051321 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098791 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRIP

Protein Analysis

208

Amino Acids

23.31

Weight (kDa)

9.3

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66030 AT5G66030 AT5G66030 AT5G66030
fragaria_vesca	FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521
malus_domestica	MD02G1119300.v1.1 MD15G1233300.v1.1
prunus_persica	Prupe.7G179600_v2.0.a1 Prupe.7G179600_v2.0.a1
pyrus_communis	pycom02g09300 pycom05g12530 pycom15g20780
rosa_chinensis	RchiOBHm_Chr2g0097451 RchiOBHm_Chr2g0097461 RchiOBHm_Chr2g0097561 RchiOBHm_Chr2g0097581 RchiOBHm_Chr6g0253501
rosa_laevigata	RLG00000007707 RLG00000016726
rosa_multiflora	Rmu_sc0003151.1_g000017 Rmu_sc0005929.1_g000013 Rmu_sc0009080.1_g000004 Rmu_sc0023738.1_g000001 Rmu_sc0023972.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144680 Rroxscaffold_4G00289770
rosa_rugosa	Rorug02G0067100 Rorug02G0067200 Rorug02G0067300 Rorug02G0067400 Rorug05G0050700
rosa_samantha	Rh2AG113500 Rh2BG116600 Rh2CG118600 Rh2DG117600 Rh3AG216100 Rh3BG375000 Rh3CG269100 Rh3DG243100 Rh4BG210200 Rh4BG210300
rosa_wichuraiana	Rw2G008900 Rw2G019040 Rw3G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	60
AccII	CGCG	1 cut(s)	436
AciI	CCGC	9 cut(s)	109, 192, 216, 219, 341, 385, 443, 446, 566
AclWI	GGATC	2 cut(s)	331, 552
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	2 cut(s)	299, 597
AcuI	CTGAAG	5 cut(s)	127, 258, 452, 479, 546
AfaI	GTAC	1 cut(s)	579
AfiI	CCNNNNNNNGG	2 cut(s)	85, 356
AgsI	TTSAA	4 cut(s)	56, 338, 398, 485
AjnI	CCWGG	1 cut(s)	84
AluBI	AGCT	8 cut(s)	283, 382, 440, 500, 508, 520, 530, 621
AluI	AGCT	8 cut(s)	283, 382, 440, 500, 508, 520, 530, 621
Alw21I	GWGCWC	2 cut(s)	502, 510
Alw26I	GTCTC	1 cut(s)	315
AlwI	GGATC	2 cut(s)	331, 552
AoxI	GGCC	2 cut(s)	87, 162
ApeKI	GCWGC	3 cut(s)	379, 382, 440
ApoI	RAATTY	2 cut(s)	299, 597
Asp700I	GAANNNNTTC	1 cut(s)	299
AspS9I	GGNCC	1 cut(s)	88
AsuC2I	CCSGG	1 cut(s)	605
AsuHPI	GGTGA	3 cut(s)	218, 385, 593
AsuII	TTCGAA	1 cut(s)	318
BanII	GRGCYC	2 cut(s)	502, 510
Bbv12I	GWGCWC	2 cut(s)	502, 510
BbvI	GCAGC	3 cut(s)	369, 391, 427
BccI	CCATC	1 cut(s)	251
BceAI	ACGGC	1 cut(s)	206
BciT130I	CCWGG	1 cut(s)	86
BcnI	CCSGG	1 cut(s)	605
BcoDI	GTCTC	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	127
BisI	GCNGC	7 cut(s)	192, 219, 380, 383, 386, 441, 444
BlsI	GCNGC	7 cut(s)	193, 220, 381, 384, 387, 442, 445
BmcAI	AGTACT	1 cut(s)	579
Bme1390I	CCNGG	2 cut(s)	86, 605
BmgT120I	GGNCC	1 cut(s)	88
BmrFI	CCNGG	2 cut(s)	86, 605
BmsI	GCATC	1 cut(s)	472
BplI	GAGNNNNNCTC	2 cut(s)	564, 596
Bpu14I	TTCGAA	1 cut(s)	318
BpuEI	CTTGAG	2 cut(s)	290, 486
BpuMI	CCSGG	1 cut(s)	605
BsaJI	CCNNGG	1 cut(s)	159
BsaWI	WCCGGW	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 356
BseBI	CCWGG	1 cut(s)	86
BseDI	CCNNGG	1 cut(s)	159
BseLI	CCNNNNNNNGG	2 cut(s)	85, 356
BseMII	CTCAG	1 cut(s)	326
BseRI	GAGGAG	2 cut(s)	190, 383
BseXI	GCAGC	3 cut(s)	369, 391, 427
Bsh1236I	CGCG	1 cut(s)	436
BshFI	GGCC	2 cut(s)	89, 164
BsiHKAI	GWGCWC	2 cut(s)	502, 510
BsiSI	CCGG	3 cut(s)	204, 350, 605
BslI	CCNNNNNNNGG	2 cut(s)	85, 356
BsmAI	GTCTC	1 cut(s)	315
BsnI	GGCC	2 cut(s)	89, 164
Bsp119I	TTCGAA	1 cut(s)	318
Bsp1286I	GDGCHC	2 cut(s)	502, 510
Bsp143I	GATC	4 cut(s)	256, 323, 544, 584
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	9 cut(s)	109, 192, 216, 219, 341, 385, 443, 446, 566
BspANI	GGCC	2 cut(s)	89, 164
BspCNI	CTCAG	1 cut(s)	325
BspFNI	CGCG	1 cut(s)	436
BspPI	GGATC	2 cut(s)	331, 552
BspT104I	TTCGAA	1 cut(s)	318
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	4 cut(s)	256, 323, 544, 584
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	274
Bst6I	CTCTTC	2 cut(s)	417, 565
BstBI	TTCGAA	1 cut(s)	318
BstC8I	GCNNGC	2 cut(s)	438, 522
BstDEI	CTNAG	1 cut(s)	312
BstDSI	CCRYGG	1 cut(s)	159
BstFNI	CGCG	1 cut(s)	436
BstKTI	GATC	4 cut(s)	259, 326, 547, 587
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	4 cut(s)	256, 323, 544, 584
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 289, 385, 452
BstNI	CCWGG	1 cut(s)	86
BstSCI	CCNGG	2 cut(s)	84, 603
BstSFI	CTRYAG	1 cut(s)	127
BstUI	CGCG	1 cut(s)	436
BstV1I	GCAGC	3 cut(s)	369, 391, 427
BstX2I	RGATCY	1 cut(s)	323
BstYI	RGATCY	1 cut(s)	323
BsuRI	GGCC	2 cut(s)	89, 164
BtgI	CCRYGG	1 cut(s)	159
Cac8I	GCNNGC	2 cut(s)	438, 522
Cfr13I	GGNCC	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	578
CviAII	CATG	3 cut(s)	97, 160, 277
CviQI	GTAC	1 cut(s)	578
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	4 cut(s)	258, 325, 546, 586
DpnII	GATC	4 cut(s)	256, 323, 544, 584
EaeI	YGGCCR	1 cut(s)	162
Eam1104I	CTCTTC	2 cut(s)	417, 565
EarI	CTCTTC	2 cut(s)	417, 565
EciI	GGCGGA	1 cut(s)	461
Ecl136II	GAGCTC	2 cut(s)	500, 508
Eco130I	CCWWGG	1 cut(s)	159
Eco24I	GRGCYC	2 cut(s)	502, 510
Eco53kI	GAGCTC	2 cut(s)	500, 508
Eco57I	CTGAAG	5 cut(s)	127, 258, 452, 479, 546
EcoICRI	GAGCTC	2 cut(s)	500, 508
EcoRI	GAATTC	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	159
EcoT38I	GRGCYC	2 cut(s)	502, 510
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	3 cut(s)	100, 163, 280
FaiI	YATR	3 cut(s)	98, 161, 278
FatI	CATG	3 cut(s)	96, 159, 276
FauI	CCCGC	2 cut(s)	116, 559
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	7 cut(s)	192, 219, 380, 383, 386, 441, 444
FriOI	GRGCYC	2 cut(s)	502, 510
Fsp4HI	GCNGC	7 cut(s)	192, 219, 380, 383, 386, 441, 444
GluI	GCNGC	7 cut(s)	192, 219, 380, 383, 386, 441, 444
HaeIII	GGCC	2 cut(s)	89, 164
HapII	CCGG	3 cut(s)	204, 350, 605
Hin1II	CATG	3 cut(s)	100, 163, 280
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	6 cut(s)	331, 362, 398, 473, 491, 591
HpaII	CCGG	3 cut(s)	204, 350, 605
HphI	GGTGA	3 cut(s)	218, 385, 593
Hpy166II	GTNNAC	2 cut(s)	61, 226
Hpy188I	TCNGA	5 cut(s)	238, 330, 367, 459, 584
Hpy188III	TCNNGA	7 cut(s)	254, 268, 470, 495, 503, 548, 588
Hpy8I	GTNNAC	2 cut(s)	61, 226
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	2 cut(s)	314, 347
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4V	TGCA	1 cut(s)	292
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 289, 385, 452
HpyF3I	CTNAG	1 cut(s)	312
Hsp92II	CATG	3 cut(s)	100, 163, 280
Kzo9I	GATC	4 cut(s)	256, 323, 544, 584
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	9 cut(s)	71, 98, 217, 281, 357, 363, 455, 508, 618
Lsp1109I	GCAGC	3 cut(s)	369, 391, 427
LweI	GCATC	1 cut(s)	472
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	4 cut(s)	258, 325, 546, 586
MboI	GATC	4 cut(s)	256, 323, 544, 584
MboII	GAAGA	5 cut(s)	133, 326, 434, 458, 582
MflI	RGATCY	1 cut(s)	323
MhlI	GDGCHC	2 cut(s)	502, 510
MluCI	AATT	3 cut(s)	287, 299, 597
MlyI	GAGTC	1 cut(s)	585
MmeI	TCCRAC	1 cut(s)	522
MnlI	CCTC	6 cut(s)	112, 127, 211, 314, 361, 364
MroXI	GAANNNNTTC	1 cut(s)	299
MspA1I	CMGCKG	1 cut(s)	382
MspI	CCGG	3 cut(s)	204, 350, 605
MspR9I	CCNGG	2 cut(s)	86, 605
MvaI	CCWGG	1 cut(s)	86
MvnI	CGCG	1 cut(s)	436
MwoI	GCNNNNNNNGC	4 cut(s)	170, 289, 385, 452
NciI	CCSGG	1 cut(s)	605
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	4 cut(s)	256, 323, 544, 584
NlaIII	CATG	3 cut(s)	100, 163, 280
NmuCI	GTSAC	1 cut(s)	206
NspV	TTCGAA	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	2 cut(s)	252, 261
PdmI	GAANNNNTTC	1 cut(s)	299
PfeI	GAWTC	5 cut(s)	331, 362, 398, 473, 491
PkrI	GCNGC	7 cut(s)	193, 220, 381, 384, 387, 442, 445
PleI	GAGTC	1 cut(s)	585
PpsI	GAGTC	1 cut(s)	585
Psp124BI	GAGCTC	2 cut(s)	502, 510
Psp6I	CCWGG	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	323
PvuII	CAGCTG	1 cut(s)	382
RsaI	GTAC	1 cut(s)	579
RsaNI	GTAC	1 cut(s)	578
SacI	GAGCTC	2 cut(s)	502, 510
SatI	GCNGC	7 cut(s)	192, 219, 380, 383, 386, 441, 444
Sau3AI	GATC	4 cut(s)	256, 323, 544, 584
Sau96I	GGNCC	1 cut(s)	88
ScaI	AGTACT	1 cut(s)	579
SchI	GAGTC	1 cut(s)	585
ScrFI	CCNGG	2 cut(s)	86, 605
SduI	GDGCHC	2 cut(s)	502, 510
SfaNI	GCATC	1 cut(s)	472
SfcI	CTRYAG	1 cut(s)	127
SfuI	TTCGAA	1 cut(s)	318
SmlI	CTYRAG	2 cut(s)	305, 501
SmoI	CTYRAG	2 cut(s)	305, 501
Sse9I	AATT	3 cut(s)	287, 299, 597
SsiI	CCGC	9 cut(s)	109, 192, 216, 219, 341, 385, 443, 446, 566
SstI	GAGCTC	2 cut(s)	502, 510
StyD4I	CCNGG	2 cut(s)	84, 603
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	274
TaqI	TCGA	5 cut(s)	246, 318, 532, 589, 594
TasI	AATT	3 cut(s)	287, 299, 597
TatI	WGTACW	1 cut(s)	577
TauI	GCSGC	4 cut(s)	194, 221, 388, 446
TfiI	GAWTC	5 cut(s)	331, 362, 398, 473, 491
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	3 cut(s)	379, 382, 440
Tsp45I	GTSAC	1 cut(s)	206
XapI	RAATTY	2 cut(s)	299, 597
XmiI	GTMKAC	1 cut(s)	60
XmnI	GAANNNNTTC	1 cut(s)	299
ZrmI	AGTACT	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.