Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003644

Physical Location & Seq

Genomic Coordinates Reverse (-)

15187932 .. 15192865

Gene Structure 4934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g23320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGACTCTTTCTGCTGCTGGAAAATGGAGGAGAACCACTCTAGCTCCTCTTGCTCTATTACAATCCCGAACCTTCCGATCAGACGCCGCCCTAGAAGCTCTATCCAAAGCCTCCGACGAAAAACTCCCTAACTTGCTTCTCTACAACTACCCCTCCTTCTCCGGCGCCTTCTCCGCTCTCTTCGCCCACCTCTTCCACTCTCGCCTCAACCTCCCCCTCCTCTCCCTCCCTTTCTCCTCCGTGGAGCCCTTCAGGGTCGGTGATTTGTGCATTCAAGGACTTGAAAGCTGCTATTTAGTTGATTTTGTTGGCCCGAGAGGATTCGCGGTCGAGCTTGCAAGGAGGGCTTCGTGCGAGGTGATTGGTTTCGATCATCGGAAATCTGCACTTGCTGAGTTACCCTCCAACGGGGAGGATTGTCCTGAAAACCTCACGTTTCGAGTGAATACTGAAAAGAGTAGCTCTAGTGCTGTGTATGATTACTTCTCTTCTAAGCTTGCCGGTATTGAACGTGATAATGGAATGGGAGGAAGATTGTTGGAAGTGGAGGACAGAGATCATGTGGAAATGGTGCTTAAGTATATTGAGGATGGAGATCTTCGTCGGTGGAGCTTACCGGATATTAGGGCGTTTAATATTGGACTTGCTGAATGGCGCTCAAAGTTGAATTGCTTTACTAATCCATACATGTATGAACAGTTACTGGAGATAAGTGCTACAGATGTTATTCTTAAGGGAAAGTCACGTATTTCTGCTCGCCAAAAATCTGCAAATAAATTACTGGATAAAGCTTTGAAAATAAGGCTGGGCAGAGGATTTTATGGGGAGTGTCTGGGAGTGAGAGCTGATGGGAGTTCAGAGTTAAGTGATGAAATTGGCAAGCAGCTAAGTTTGAAAAGTGCCGCTGCTGGTCTAAGGCCTATTGGAGCTGTTATATTCATGCAACGGAGAAACCTCAAAATGTGCTTAAGGAGTATCGATACTGCTACCGATACCTCTGAAGTTGCAAAGGCATATGGAGGAGGAGGCACCCCAAGTTCTAGTTCCTTCATTATAAGGATGGATGAGTACAATCAGTGGATTTCAGGAAATTCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

367

Amino Acids

40.5

Weight (kDa)

8.59

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09580 AT5G09580
fragaria_vesca	FvH4_1g23320 FvH4_1g23320
malus_domestica	MD10G1056400.v1.1
prunus_persica	Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1
pyrus_communis	pycom10g04330 pycom10g04340
rosa_chinensis	RchiOBHm_Chr2g0118131 RchiOBHm_Chr2g0118141 RchiOBHm_Chr2g0118161
rosa_laevigata	RLG00000018394 RLG00000018395 RLG00000018401
rosa_multiflora	Rmu_sc0001618.1_g000003 Rmu_sc0001618.1_g000008 Rmu_sc0001618.1_g000012 Rmu_sc0009463.1_g000001 Rmu_sc0009463.1_g000017
rosa_roxburghii	Rroxscaffold_2G00125850 Rroxscaffold_2G00125900 Rroxscaffold_3G00234990 Rroxscaffold_4G00309060
rosa_rugosa	Rorug02G0216300 Rorug02G0217100
rosa_samantha	Rh2AG273200 Rh2BG285500 Rh2CG410200 Rh6DG346000 Rh7BG104700
rosa_wichuraiana	Rw2G021570 Rw2G021590 Rw2G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1055
AccB1I	GGYRCC	2 cut(s)	164, 1028
AccBSI	CCGCTC	1 cut(s)	176
AccII	CGCG	1 cut(s)	326
AciI	CCGC	4 cut(s)	87, 174, 326, 903
AcsI	RAATTY	1 cut(s)	1090
AcuI	CTGAAG	2 cut(s)	235, 1020
AcyI	GRCGYC	2 cut(s)	84, 165
AfaI	GTAC	1 cut(s)	1070
AfiI	CCNNNNNNNGG	2 cut(s)	407, 408
AflII	CTTAAG	3 cut(s)	575, 731, 967
AflIII	ACRYGT	1 cut(s)	687
AgsI	TTSAA	7 cut(s)	275, 284, 509, 667, 796, 895, 1095
AjuI	GAANNNNNNNTTGG	2 cut(s)	1027, 1059
AlwNI	CAGNNNCTG	1 cut(s)	703
Ama87I	CYCGRG	1 cut(s)	313
AoxI	GGCC	2 cut(s)	310, 917
ApeKI	GCWGC	4 cut(s)	14, 288, 883, 905
ApoI	RAATTY	1 cut(s)	1090
AspLEI	GCGC	2 cut(s)	167, 657
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	2 cut(s)	272, 370
AvaI	CYCGRG	1 cut(s)	313
BanI	GGYRCC	2 cut(s)	164, 1028
BanII	GRGCYC	1 cut(s)	249
BarI	GAAGNNNNNNTAC	2 cut(s)	467, 499
BbvI	GCAGC	3 cut(s)	275, 892, 895
BccI	CCATC	3 cut(s)	584, 842, 1054
BfaI	CTAG	4 cut(s)	41, 92, 465, 1041
BfmI	CTRYAG	1 cut(s)	717
BfoI	RGCGCY	2 cut(s)	168, 658
BfrI	CTTAAG	3 cut(s)	575, 731, 967
BglII	AGATCT	1 cut(s)	595
BisI	GCNGC	6 cut(s)	15, 87, 289, 884, 903, 906
BlsI	GCNGC	6 cut(s)	16, 88, 290, 885, 904, 907
BmeT110I	CYCGRG	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	311
BmiI	GGNNCC	3 cut(s)	166, 246, 1030
BplI	GAGNNNNNCTC	4 cut(s)	22, 54, 386, 418
BpmI	CTGGAG	1 cut(s)	725
Bsa29I	ATCGAT	1 cut(s)	978
BsaAI	YACGTR	1 cut(s)	746
BsaBI	GATNNNNATC	1 cut(s)	594
BsaHI	GRCGYC	2 cut(s)	84, 165
BsaJI	CCNNGG	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	616
BsaXI	ACNNNNNCTCC	4 cut(s)	28, 58, 137, 167
Bsc4I	CCNNNNNNNGG	2 cut(s)	407, 408
Bse118I	RCCGGY	1 cut(s)	500
Bse1I	ACTGG	2 cut(s)	708, 786
Bse8I	GATNNNNATC	1 cut(s)	594
BseCI	ATCGAT	1 cut(s)	978
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	3 cut(s)	595, 1065, 1069
BseJI	GATNNNNATC	1 cut(s)	594
BseLI	CCNNNNNNNGG	2 cut(s)	407, 408
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	2 cut(s)	708, 786
BseRI	GAGGAG	6 cut(s)	36, 43, 209, 226, 1035, 1038
BseXI	GCAGC	3 cut(s)	275, 892, 895
BseYI	CCCAGC	1 cut(s)	805
BsgI	GTGCAG	1 cut(s)	369
Bsh1236I	CGCG	1 cut(s)	326
Bsh1285I	CGRYCG	1 cut(s)	330
BshFI	GGCC	2 cut(s)	312, 919
BshNI	GGYRCC	2 cut(s)	164, 1028
BshVI	ATCGAT	1 cut(s)	978
BsiEI	CGRYCG	1 cut(s)	330
BsiHKCI	CYCGRG	1 cut(s)	313
BsiSI	CCGG	3 cut(s)	162, 501, 617
BslI	CCNNNNNNNGG	2 cut(s)	407, 408
BsmI	GAATGC	1 cut(s)	270
BsnI	GGCC	2 cut(s)	312, 919
BsoBI	CYCGRG	1 cut(s)	313
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	4 cut(s)	77, 370, 556, 595
BspACI	CCGC	4 cut(s)	87, 174, 326, 903
BspANI	GGCC	2 cut(s)	312, 919
BspCNI	CTCAG	1 cut(s)	385
BspDI	ATCGAT	1 cut(s)	978
BspFNI	CGCG	1 cut(s)	326
BspLI	GGNNCC	3 cut(s)	166, 246, 1030
BspT107I	GGYRCC	2 cut(s)	164, 1028
BspTI	CTTAAG	3 cut(s)	575, 731, 967
BsrBI	CCGCTC	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	500
BsrI	ACTGG	2 cut(s)	708, 786
BssAI	RCCGGY	1 cut(s)	500
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	4 cut(s)	77, 370, 556, 595
BssNI	GRCGYC	2 cut(s)	84, 165
Bst4CI	ACNGT	1 cut(s)	699
Bst6I	CTCTTC	3 cut(s)	185, 197, 493
BstACI	GRCGYC	2 cut(s)	84, 165
BstAFI	CTTAAG	3 cut(s)	575, 731, 967
BstBAI	YACGTR	1 cut(s)	746
BstC8I	GCNNGC	4 cut(s)	336, 498, 757, 881
BstDEI	CTNAG	4 cut(s)	393, 492, 887, 914
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	3 cut(s)	595, 1065, 1069
BstFNI	CGCG	1 cut(s)	326
BstH2I	RGCGCY	2 cut(s)	168, 658
BstHHI	GCGC	2 cut(s)	167, 657
BstKTI	GATC	4 cut(s)	80, 373, 559, 598
BstMBI	GATC	4 cut(s)	77, 370, 556, 595
BstMCI	CGRYCG	1 cut(s)	330
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 95, 173, 182, 344
BstNSI	RCATGY	1 cut(s)	691
BstSFI	CTRYAG	1 cut(s)	717
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	3 cut(s)	275, 892, 895
BstX2I	RGATCY	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	595
Bsu15I	ATCGAT	1 cut(s)	978
BsuRI	GGCC	2 cut(s)	312, 919
BsuTUI	ATCGAT	1 cut(s)	978
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	3 cut(s)	595, 1065, 1069
BtsIMutI	CAGTG	1 cut(s)	1082
Cac8I	GCNNGC	4 cut(s)	336, 498, 757, 881
CaiI	CAGNNNCTG	1 cut(s)	703
CfoI	GCGC	2 cut(s)	167, 657
Cfr10I	RCCGGY	1 cut(s)	500
Cfr13I	GGNCC	1 cut(s)	311
ClaI	ATCGAT	1 cut(s)	978
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	1069
CviAII	CATG	3 cut(s)	560, 688, 940
CviQI	GTAC	1 cut(s)	1069
DdeI	CTNAG	4 cut(s)	393, 492, 887, 914
DinI	GGCGCC	1 cut(s)	166
DpnI	GATC	4 cut(s)	79, 372, 558, 597
DpnII	GATC	4 cut(s)	77, 370, 556, 595
Eam1104I	CTCTTC	3 cut(s)	185, 197, 493
EarI	CTCTTC	3 cut(s)	185, 197, 493
Eco147I	AGGCCT	1 cut(s)	919
Eco24I	GRGCYC	1 cut(s)	249
Eco57I	CTGAAG	2 cut(s)	235, 1020
Eco88I	CYCGRG	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	249
EgeI	GGCGCC	1 cut(s)	166
EheI	GGCGCC	1 cut(s)	166
FaeI	CATG	3 cut(s)	563, 691, 943
FalI	AAGNNNNNCTT	2 cut(s)	331, 363
FatI	CATG	3 cut(s)	559, 687, 939
FauNDI	CATATG	1 cut(s)	1015
Fnu4HI	GCNGC	6 cut(s)	15, 87, 289, 884, 903, 906
FokI	GGATG	3 cut(s)	602, 1072, 1076
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	6 cut(s)	15, 87, 289, 884, 903, 906
FspBI	CTAG	4 cut(s)	41, 92, 465, 1041
GlaI	GCGC	2 cut(s)	166, 656
GluI	GCNGC	6 cut(s)	15, 87, 289, 884, 903, 906
GsaI	CCCAGC	1 cut(s)	809
GsuI	CTGGAG	1 cut(s)	725
HaeII	RGCGCY	2 cut(s)	168, 658
HaeIII	GGCC	2 cut(s)	312, 919
HapII	CCGG	3 cut(s)	162, 501, 617
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	2 cut(s)	167, 657
Hin1I	GRCGYC	2 cut(s)	84, 165
Hin1II	CATG	3 cut(s)	563, 691, 943
Hin6I	GCGC	2 cut(s)	165, 655
HinP1I	GCGC	2 cut(s)	165, 655
HindIII	AAGCTT	2 cut(s)	494, 789
HinfI	GANTC	2 cut(s)	4, 321
HpaII	CCGG	3 cut(s)	162, 501, 617
HphI	GGTGA	2 cut(s)	272, 370
Hpy188I	TCNGA	6 cut(s)	77, 82, 115, 378, 859, 1000
Hpy188III	TCNNGA	4 cut(s)	66, 422, 1086, 1095
Hpy99I	CGWCG	2 cut(s)	119, 606
HpyAV	CCTTC	5 cut(s)	82, 166, 178, 259, 1057
HpyCH4III	ACNGT	1 cut(s)	699
HpyCH4IV	ACGT	3 cut(s)	434, 511, 745
HpyCH4V	TGCA	6 cut(s)	270, 338, 386, 770, 943, 1007
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 95, 173, 182, 344
HpyF3I	CTNAG	4 cut(s)	393, 492, 887, 914
HpySE526I	ACGT	3 cut(s)	434, 511, 745
Hsp92I	GRCGYC	2 cut(s)	84, 165
Hsp92II	CATG	3 cut(s)	563, 691, 943
HspAI	GCGC	2 cut(s)	165, 655
KasI	GGCGCC	1 cut(s)	164
Kzo9I	GATC	4 cut(s)	77, 370, 556, 595
LmnI	GCTCC	4 cut(s)	49, 244, 609, 926
Lsp1109I	GCAGC	3 cut(s)	275, 892, 895
MaeI	CTAG	4 cut(s)	41, 92, 465, 1041
MaeII	ACGT	3 cut(s)	434, 511, 745
MaeIII	GTNAC	3 cut(s)	396, 699, 741
MalI	GATC	4 cut(s)	79, 372, 558, 597
MbiI	CCGCTC	1 cut(s)	176
MboI	GATC	4 cut(s)	77, 370, 556, 595
MboII	GAAGA	5 cut(s)	172, 184, 480, 543, 590
MflI	RGATCY	1 cut(s)	595
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	4 cut(s)	667, 776, 873, 1090
Mly113I	GGCGCC	1 cut(s)	165
MmeI	TCCRAC	3 cut(s)	138, 429, 519
MseI	TTAA	5 cut(s)	576, 633, 732, 863, 968
MspA1I	CMGCKG	1 cut(s)	905
MspCI	CTTAAG	3 cut(s)	575, 731, 967
MspI	CCGG	3 cut(s)	162, 501, 617
Mva1269I	GAATGC	1 cut(s)	270
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	5 cut(s)	50, 95, 173, 182, 344
NarI	GGCGCC	1 cut(s)	165
NdeI	CATATG	1 cut(s)	1015
NdeII	GATC	4 cut(s)	77, 370, 556, 595
NlaIII	CATG	3 cut(s)	563, 691, 943
NlaIV	GGNNCC	3 cut(s)	166, 246, 1030
NmuCI	GTSAC	1 cut(s)	741
NspI	RCATGY	1 cut(s)	691
PceI	AGGCCT	1 cut(s)	919
PciI	ACATGT	1 cut(s)	687
PctI	GAATGC	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	321
PkrI	GCNGC	6 cut(s)	16, 88, 290, 885, 904, 907
PluTI	GGCGCC	1 cut(s)	168
Ppu21I	YACGTR	1 cut(s)	746
PscI	ACATGT	1 cut(s)	687
PsiI	TTATAA	1 cut(s)	1055
PspFI	CCCAGC	1 cut(s)	805
PspN4I	GGNNCC	3 cut(s)	166, 246, 1030
PspPI	GGNCC	1 cut(s)	311
PstNI	CAGNNNCTG	1 cut(s)	703
PsuI	RGATCY	1 cut(s)	595
RsaI	GTAC	1 cut(s)	1070
RsaNI	GTAC	1 cut(s)	1069
SaqAI	TTAA	5 cut(s)	576, 633, 732, 863, 968
SatI	GCNGC	6 cut(s)	15, 87, 289, 884, 903, 906
Sau3AI	GATC	4 cut(s)	77, 370, 556, 595
Sau96I	GGNCC	1 cut(s)	311
SduI	GDGCHC	1 cut(s)	249
SfcI	CTRYAG	1 cut(s)	717
SfoI	GGCGCC	1 cut(s)	166
SmlI	CTYRAG	3 cut(s)	575, 731, 967
SmoI	CTYRAG	3 cut(s)	575, 731, 967
Sse9I	AATT	4 cut(s)	667, 776, 873, 1090
SseBI	AGGCCT	1 cut(s)	919
SsiI	CCGC	4 cut(s)	87, 174, 326, 903
SspDI	GGCGCC	1 cut(s)	164
SspI	AATATT	1 cut(s)	637
SspMI	CTAG	4 cut(s)	41, 92, 465, 1041
StuI	AGGCCT	1 cut(s)	919
TaaI	ACNGT	1 cut(s)	699
TaiI	ACGT	3 cut(s)	437, 514, 748
TaqI	TCGA	4 cut(s)	330, 369, 439, 978
TasI	AATT	4 cut(s)	667, 776, 873, 1090
TatI	WGTACW	1 cut(s)	1068
TauI	GCSGC	2 cut(s)	89, 905
TfiI	GAWTC	1 cut(s)	321
Tru1I	TTAA	5 cut(s)	576, 633, 732, 863, 968
Tru9I	TTAA	5 cut(s)	576, 633, 732, 863, 968
TscAI	CASTG	1 cut(s)	1082
TseFI	GTSAC	1 cut(s)	741
TseI	GCWGC	4 cut(s)	14, 288, 883, 905
Tsp45I	GTSAC	1 cut(s)	741
TspDTI	ATGAA	4 cut(s)	708, 885, 928, 1039
TspGWI	ACGGA	2 cut(s)	229, 961
TspRI	CASTG	1 cut(s)	1082
Vha464I	CTTAAG	3 cut(s)	575, 731, 967
XapI	RAATTY	1 cut(s)	1090
XceI	RCATGY	1 cut(s)	691
XspI	CTAG	4 cut(s)	41, 92, 465, 1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.