Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001618.1

Orthogroup ID

OG0003644

Physical Location & Seq

Genomic Coordinates Forward (+)

56370 .. 60337

Gene Structure 3968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001618.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atggatgcaagtttgttagaagttgaggacagggatcgtgtggaaatggtgcttaagtacattgaggatggagatctccatcgctggagcttaccggatattagggcgtttaatattggacttagtgaatggcgctcaaagttggattgcttgactaatccatacatgtatgaacaggtttggaatgtaatgcagtcgggatggttatttgattttgaacacaaacacacgcacccatcactagcttgcaggtttcctcattcagttctgactgttgacttgtttaaaatcaatattgatgcagttactggagataagtgctacgatgttatagctaagggaaagtcgtatatttctgctcgccaaaaggctgcaaattacttactggataaagctctcaaaataaggttgggcagaggagtgtctgcctcactagatcaacccggcgaccgtacttccagtcctagtctccccaggagccgactgcgagcgcaaccgccactgttacttccagcgaagctagagtcacgctttagcaaacccgtgttcctctccaacttcccagtgattgctctgctcggctttcaagttgagtatcgatttggtgaacgcaaagagaccacatctaaagcccttacccgcgtaaggcaagaagtccttttccggaaggcaagaaaagaaccctgtgacgaggttggtgctctcctcgtccacaacgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

240

Amino Acids

27.46

Weight (kDa)

9.12

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09580 AT5G09580
fragaria_vesca	FvH4_1g23320 FvH4_1g23320
malus_domestica	MD10G1056400.v1.1
prunus_persica	Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1
pyrus_communis	pycom10g04330 pycom10g04340
rosa_chinensis	RchiOBHm_Chr2g0118131 RchiOBHm_Chr2g0118141 RchiOBHm_Chr2g0118161
rosa_laevigata	RLG00000018394 RLG00000018395 RLG00000018401
rosa_multiflora	Rmu_sc0001618.1_g000003 Rmu_sc0001618.1_g000008 Rmu_sc0001618.1_g000012 Rmu_sc0009463.1_g000001 Rmu_sc0009463.1_g000017
rosa_roxburghii	Rroxscaffold_2G00125850 Rroxscaffold_2G00125900 Rroxscaffold_3G00234990 Rroxscaffold_4G00309060
rosa_rugosa	Rorug02G0216300 Rorug02G0217100
rosa_samantha	Rh2AG273200 Rh2BG285500 Rh2CG410200 Rh6DG346000 Rh7BG104700
rosa_wichuraiana	Rw2G021570 Rw2G021590 Rw2G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	240
AccII	CGCG	1 cut(s)	642
AccIII	TCCGGA	1 cut(s)	663
AciI	CCGC	2 cut(s)	497, 640
AclWI	GGATC	1 cut(s)	42
AfaI	GTAC	2 cut(s)	59, 454
AfiI	CCNNNNNNNGG	1 cut(s)	645
AflII	CTTAAG	1 cut(s)	53
AflIII	ACRYGT	1 cut(s)	165
AgsI	TTSAA	2 cut(s)	218, 587
AjnI	CCWGG	1 cut(s)	473
AluBI	AGCT	5 cut(s)	90, 245, 335, 395, 520
AluI	AGCT	5 cut(s)	90, 245, 335, 395, 520
Alw21I	GWGCWC	1 cut(s)	703
Alw26I	GTCTC	2 cut(s)	473, 611
AlwI	GGATC	1 cut(s)	42
AlwNI	CAGNNNCTG	1 cut(s)	308
Aor13HI	TCCGGA	1 cut(s)	663
ApeKI	GCWGC	1 cut(s)	371
ArsI	GACNNNNNNTTYG	2 cut(s)	509, 541
AspLEI	GCGC	2 cut(s)	135, 493
AsuC2I	CCSGG	1 cut(s)	444
AsuHPI	GGTGA	1 cut(s)	617
Bbv12I	GWGCWC	1 cut(s)	703
BbvI	GCAGC	1 cut(s)	358
BccI	CCATC	4 cut(s)	62, 87, 195, 244
BcgI	CGANNNNNNTGC	2 cut(s)	680, 714
BciT130I	CCWGG	1 cut(s)	475
BcnI	CCSGG	1 cut(s)	444
BcoDI	GTCTC	2 cut(s)	473, 611
BfaI	CTAG	4 cut(s)	242, 434, 465, 521
BfoI	RGCGCY	1 cut(s)	136
BfrI	CTTAAG	1 cut(s)	53
BfuAI	ACCTGC	1 cut(s)	240
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
Bme1390I	CCNGG	2 cut(s)	444, 475
BmiI	GGNNCC	1 cut(s)	479
BmrFI	CCNGG	2 cut(s)	444, 475
BmrI	ACTGGG	1 cut(s)	557
BmsI	GCATC	1 cut(s)	289
BmuI	ACTGGG	1 cut(s)	557
BpmI	CTGGAG	2 cut(s)	106, 330
Bpu10I	CCTNAGC	1 cut(s)	336
BpuMI	CCSGG	1 cut(s)	444
Bsa29I	ATCGAT	1 cut(s)	598
BsaBI	GATNNNNATC	2 cut(s)	72, 78
BsaI	GGTCTC	1 cut(s)	611
BsaJI	CCNNGG	1 cut(s)	473
BsaWI	WCCGGW	2 cut(s)	94, 663
Bsc4I	CCNNNNNNNGG	1 cut(s)	645
Bse1I	ACTGG	4 cut(s)	313, 390, 459, 563
Bse8I	GATNNNNATC	2 cut(s)	72, 78
BseAI	TCCGGA	1 cut(s)	663
BseBI	CCWGG	1 cut(s)	475
BseCI	ATCGAT	1 cut(s)	598
BseDI	CCNNGG	1 cut(s)	473
BseGI	GGATG	3 cut(s)	10, 73, 206
BseJI	GATNNNNATC	2 cut(s)	72, 78
BseLI	CCNNNNNNNGG	1 cut(s)	645
BseNI	ACTGG	4 cut(s)	313, 390, 459, 563
BseRI	GAGGAG	2 cut(s)	432, 695
BseXI	GCAGC	1 cut(s)	358
Bsh1236I	CGCG	1 cut(s)	642
Bsh1285I	CGRYCG	1 cut(s)	451
BshVI	ATCGAT	1 cut(s)	598
BsiEI	CGRYCG	1 cut(s)	451
BsiHKAI	GWGCWC	1 cut(s)	703
BsiSI	CCGG	3 cut(s)	95, 444, 664
BslI	CCNNNNNNNGG	1 cut(s)	645
BsmAI	GTCTC	2 cut(s)	473, 611
Bso31I	GGTCTC	1 cut(s)	611
Bsp1286I	GDGCHC	1 cut(s)	703
Bsp13I	TCCGGA	1 cut(s)	663
Bsp143I	GATC	3 cut(s)	34, 73, 436
BspACI	CCGC	2 cut(s)	497, 640
BspDI	ATCGAT	1 cut(s)	598
BspEI	TCCGGA	1 cut(s)	663
BspFNI	CGCG	1 cut(s)	642
BspLI	GGNNCC	1 cut(s)	479
BspMI	ACCTGC	1 cut(s)	240
BspPI	GGATC	1 cut(s)	42
BspTI	CTTAAG	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	611
BsrI	ACTGG	4 cut(s)	313, 390, 459, 563
BssECI	CCNNGG	1 cut(s)	473
BssMI	GATC	3 cut(s)	34, 73, 436
Bst2UI	CCWGG	1 cut(s)	475
Bst4CI	ACNGT	3 cut(s)	274, 452, 504
BstAFI	CTTAAG	1 cut(s)	53
BstC8I	GCNNGC	3 cut(s)	247, 361, 489
BstDEI	CTNAG	2 cut(s)	122, 336
BstF5I	GGATG	3 cut(s)	10, 73, 206
BstFNI	CGCG	1 cut(s)	642
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	2 cut(s)	135, 493
BstKTI	GATC	3 cut(s)	37, 76, 439
BstMAI	GTCTC	2 cut(s)	473, 611
BstMBI	GATC	3 cut(s)	34, 73, 436
BstMCI	CGRYCG	1 cut(s)	451
BstNI	CCWGG	1 cut(s)	475
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	2 cut(s)	442, 473
BstUI	CGCG	1 cut(s)	642
BstV1I	GCAGC	1 cut(s)	358
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
Bsu15I	ATCGAT	1 cut(s)	598
BsuTUI	ATCGAT	1 cut(s)	598
BtgZI	GCGATG	1 cut(s)	65
BtsCI	GGATG	3 cut(s)	10, 73, 206
BtsIMutI	CAGTG	2 cut(s)	500, 570
BveI	ACCTGC	1 cut(s)	240
Cac8I	GCNNGC	3 cut(s)	247, 361, 489
CaiI	CAGNNNCTG	1 cut(s)	308
CfoI	GCGC	2 cut(s)	135, 493
ClaI	ATCGAT	1 cut(s)	598
Csp6I	GTAC	2 cut(s)	58, 453
CspCI	CAANNNNNGTGG	1 cut(s)	701
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	9 cut(s)	90, 245, 335, 371, 395, 480, 520, 582, 632
CviKI_1	RGCY	9 cut(s)	90, 245, 335, 371, 395, 480, 520, 582, 632
CviQI	GTAC	2 cut(s)	58, 453
DdeI	CTNAG	2 cut(s)	122, 336
DpnI	GATC	3 cut(s)	36, 75, 438
DpnII	GATC	3 cut(s)	34, 73, 436
DraI	TTTAAA	1 cut(s)	286
Eco31I	GGTCTC	1 cut(s)	611
EcoRII	CCWGG	1 cut(s)	473
FaeI	CATG	1 cut(s)	169
FaiI	YATR	5 cut(s)	163, 167, 171, 332, 351
FalI	AAGNNNNNCTT	2 cut(s)	642, 674
FatI	CATG	1 cut(s)	165
FauI	CCCGC	1 cut(s)	647
Fnu4HI	GCNGC	1 cut(s)	372
FokI	GGATG	3 cut(s)	17, 80, 213
Fsp4HI	GCNGC	1 cut(s)	372
FspBI	CTAG	4 cut(s)	242, 434, 465, 521
GlaI	GCGC	2 cut(s)	134, 492
GluI	GCNGC	1 cut(s)	372
GsuI	CTGGAG	2 cut(s)	106, 330
HaeII	RGCGCY	1 cut(s)	136
HapII	CCGG	3 cut(s)	95, 444, 664
HhaI	GCGC	2 cut(s)	135, 493
Hin1II	CATG	1 cut(s)	169
Hin6I	GCGC	2 cut(s)	133, 491
HinP1I	GCGC	2 cut(s)	133, 491
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	1 cut(s)	524
HpaII	CCGG	3 cut(s)	95, 444, 664
HphI	GGTGA	1 cut(s)	617
Hpy166II	GTNNAC	3 cut(s)	277, 608, 712
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	2 cut(s)	198, 664
Hpy8I	GTNNAC	3 cut(s)	277, 608, 712
HpyAV	CCTTC	1 cut(s)	661
HpyCH4III	ACNGT	3 cut(s)	274, 452, 504
HpyCH4V	TGCA	5 cut(s)	8, 193, 249, 302, 374
HpyF3I	CTNAG	2 cut(s)	122, 336
Hsp92II	CATG	1 cut(s)	169
HspAI	GCGC	2 cut(s)	133, 491
Kpn2I	TCCGGA	1 cut(s)	663
Kzo9I	GATC	3 cut(s)	34, 73, 436
LmnI	GCTCC	2 cut(s)	87, 477
Lsp1109I	GCAGC	1 cut(s)	358
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	4 cut(s)	242, 434, 465, 521
MaeIII	GTNAC	4 cut(s)	304, 504, 525, 686
MalI	GATC	3 cut(s)	36, 75, 438
MboI	GATC	3 cut(s)	34, 73, 436
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	703
MluCI	AATT	1 cut(s)	376
MlyI	GAGTC	1 cut(s)	533
MmeI	TCCRAC	2 cut(s)	123, 579
MnlI	CCTC	8 cut(s)	19, 58, 267, 410, 439, 560, 685, 716
MroI	TCCGGA	1 cut(s)	663
MseI	TTAA	3 cut(s)	54, 111, 285
MspCI	CTTAAG	1 cut(s)	53
MspI	CCGG	3 cut(s)	95, 444, 664
MspR9I	CCNGG	2 cut(s)	444, 475
MvaI	CCWGG	1 cut(s)	475
MvnI	CGCG	1 cut(s)	642
NciI	CCSGG	1 cut(s)	444
NdeII	GATC	3 cut(s)	34, 73, 436
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	1 cut(s)	479
NmeAIII	GCCGAG	1 cut(s)	558
NmuCI	GTSAC	2 cut(s)	525, 686
NspI	RCATGY	1 cut(s)	169
PciI	ACATGT	1 cut(s)	165
PkrI	GCNGC	1 cut(s)	373
PleI	GAGTC	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	532
PscI	ACATGT	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	473
PspGI	CCWGG	1 cut(s)	473
PspN4I	GGNNCC	1 cut(s)	479
PstNI	CAGNNNCTG	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	73
RsaI	GTAC	2 cut(s)	59, 454
RsaNI	GTAC	2 cut(s)	58, 453
SaqAI	TTAA	3 cut(s)	54, 111, 285
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	3 cut(s)	34, 73, 436
SchI	GAGTC	1 cut(s)	533
ScrFI	CCNGG	2 cut(s)	444, 475
SduI	GDGCHC	1 cut(s)	703
SetI	ASST	9 cut(s)	92, 180, 247, 254, 337, 397, 410, 522, 696
SfaNI	GCATC	1 cut(s)	289
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	1 cut(s)	376
SsiI	CCGC	2 cut(s)	497, 640
SspI	AATATT	2 cut(s)	115, 295
SspMI	CTAG	4 cut(s)	242, 434, 465, 521
StyD4I	CCNGG	2 cut(s)	442, 473
TaaI	ACNGT	3 cut(s)	274, 452, 504
TaqI	TCGA	1 cut(s)	598
TasI	AATT	1 cut(s)	376
TatI	WGTACW	1 cut(s)	57
Tru1I	TTAA	3 cut(s)	54, 111, 285
Tru9I	TTAA	3 cut(s)	54, 111, 285
TscAI	CASTG	2 cut(s)	507, 570
TseFI	GTSAC	2 cut(s)	525, 686
TseI	GCWGC	1 cut(s)	371
Tsp45I	GTSAC	2 cut(s)	525, 686
TspDTI	ATGAA	1 cut(s)	186
TspRI	CASTG	2 cut(s)	507, 570
Vha464I	CTTAAG	1 cut(s)	53
XceI	RCATGY	1 cut(s)	169
XspI	CTAG	4 cut(s)	242, 434, 465, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.