Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003644

Physical Location & Seq

Genomic Coordinates Reverse (-)

30488032 .. 30493995

Gene Structure 5964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49099

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGATGCAACTTTGTTACAAGTTGAGGAGAGGGATCGTGTGGAAATGGTGCTCAAGTACATTGAGGATGGAGATCTCCGTCGCTGGAGCTTACCGGATATTAGGGCCTTTAATATTGGACTTAGTGAATGGCGCTCAAAGTTGAATTGCTTTACTAAGCCATACATGTATGAACAGTTACTGGAGATAAGTGCTACGGATGTTATTGCTAAGGAAAAGTCGTACATTTCTGCTCACCAAAAGGCTGCAAATAAGTTACTGGATAAAGCTCTCAAAATAAGGTTGGGCAGAGGATTTTACGGGGAGTGTCTGGGAGTGAGAGCTGATGGGAATTCCGAGTTAAGCGTTGAAATTGGCAAGCAGCTTAGTGTGAAAAGTGCCGCTGCTGGTCTTAGGCCTATTGGAGCTGTTATATACATGCAACGGAAAAACCTCAAAATGTGCTTAAGGAGTATTGATATTGCTACCGATACCTCTGAAGTCGCAAAGGCATATGGAGGAGGAGGCACCCCAAGTTGTAGTTCCTTTATTATAAGGATGGATGAGTACAATCAGTGGGTATCAGGAAATTCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

21.49

Weight (kDa)

8.83

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09580 AT5G09580
fragaria_vesca	FvH4_1g23320 FvH4_1g23320
malus_domestica	MD10G1056400.v1.1
prunus_persica	Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1
pyrus_communis	pycom10g04330 pycom10g04340
rosa_chinensis	RchiOBHm_Chr2g0118131 RchiOBHm_Chr2g0118141 RchiOBHm_Chr2g0118161
rosa_laevigata	RLG00000018394 RLG00000018395 RLG00000018401
rosa_multiflora	Rmu_sc0001618.1_g000003 Rmu_sc0001618.1_g000008 Rmu_sc0001618.1_g000012 Rmu_sc0009463.1_g000001 Rmu_sc0009463.1_g000017
rosa_roxburghii	Rroxscaffold_2G00125850 Rroxscaffold_2G00125900 Rroxscaffold_3G00234990 Rroxscaffold_4G00309060
rosa_rugosa	Rorug02G0216300 Rorug02G0217100
rosa_samantha	Rh2AG273200 Rh2BG285500 Rh2CG410200 Rh6DG346000 Rh7BG104700
rosa_wichuraiana	Rw2G021570 Rw2G021590 Rw2G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	533
AccB1I	GGYRCC	1 cut(s)	506
AciI	CCGC	1 cut(s)	381
AclWI	GGATC	1 cut(s)	42
AcsI	RAATTY	2 cut(s)	331, 568
AcuI	CTGAAG	1 cut(s)	498
AfaI	GTAC	3 cut(s)	59, 224, 548
AflII	CTTAAG	1 cut(s)	445
AflIII	ACRYGT	1 cut(s)	165
AgsI	TTSAA	3 cut(s)	145, 350, 573
AjuI	GAANNNNNNNTTGG	2 cut(s)	505, 537
AluBI	AGCT	5 cut(s)	90, 269, 323, 364, 407
AluI	AGCT	5 cut(s)	90, 269, 323, 364, 407
Alw21I	GWGCWC	1 cut(s)	54
AlwI	GGATC	1 cut(s)	42
AlwNI	CAGNNNCTG	1 cut(s)	181
AoxI	GGCC	2 cut(s)	105, 395
ApeKI	GCWGC	3 cut(s)	245, 361, 383
ApoI	RAATTY	2 cut(s)	331, 568
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	506
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	3 cut(s)	232, 370, 373
BccI	CCATC	3 cut(s)	62, 320, 532
BfoI	RGCGCY	1 cut(s)	136
BfrI	CTTAAG	1 cut(s)	445
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	4 cut(s)	246, 362, 381, 384
BlsI	GCNGC	4 cut(s)	247, 363, 382, 385
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	1 cut(s)	508
BpmI	CTGGAG	2 cut(s)	106, 203
Bpu10I	CCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	38
BsaBI	GATNNNNATC	1 cut(s)	72
BsaWI	WCCGGW	1 cut(s)	94
Bse1I	ACTGG	2 cut(s)	186, 264
Bse8I	GATNNNNATC	1 cut(s)	72
BseGI	GGATG	5 cut(s)	10, 73, 205, 543, 547
BseJI	GATNNNNATC	1 cut(s)	72
BseNI	ACTGG	2 cut(s)	186, 264
BseRI	GAGGAG	3 cut(s)	41, 513, 516
BseXI	GCAGC	3 cut(s)	232, 370, 373
BshFI	GGCC	2 cut(s)	107, 397
BshNI	GGYRCC	1 cut(s)	506
BsiHKAI	GWGCWC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	95
BsnI	GGCC	2 cut(s)	107, 397
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	2 cut(s)	34, 73
BspACI	CCGC	1 cut(s)	381
BspANI	GGCC	2 cut(s)	107, 397
BspLI	GGNNCC	1 cut(s)	508
BspPI	GGATC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	506
BspTI	CTTAAG	1 cut(s)	445
BsrI	ACTGG	2 cut(s)	186, 264
BssMI	GATC	2 cut(s)	34, 73
Bst4CI	ACNGT	1 cut(s)	177
BstAFI	CTTAAG	1 cut(s)	445
BstC8I	GCNNGC	1 cut(s)	359
BstDEI	CTNAG	5 cut(s)	122, 156, 210, 365, 392
BstF5I	GGATG	5 cut(s)	10, 73, 205, 543, 547
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	2 cut(s)	37, 76
BstMBI	GATC	2 cut(s)	34, 73
BstNSI	RCATGY	2 cut(s)	169, 421
BstV1I	GCAGC	3 cut(s)	232, 370, 373
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	2 cut(s)	107, 397
BtsCI	GGATG	5 cut(s)	10, 73, 205, 543, 547
BtsIMutI	CAGTG	1 cut(s)	560
Cac8I	GCNNGC	1 cut(s)	359
CaiI	CAGNNNCTG	1 cut(s)	181
CfoI	GCGC	1 cut(s)	135
Cfr13I	GGNCC	1 cut(s)	105
Csp6I	GTAC	3 cut(s)	58, 223, 547
CviAII	CATG	2 cut(s)	166, 418
CviJI	RGCY	9 cut(s)	90, 107, 160, 245, 269, 323, 364, 397, 407
CviKI_1	RGCY	9 cut(s)	90, 107, 160, 245, 269, 323, 364, 397, 407
CviQI	GTAC	3 cut(s)	58, 223, 547
DdeI	CTNAG	5 cut(s)	122, 156, 210, 365, 392
DpnI	GATC	2 cut(s)	36, 75
DpnII	GATC	2 cut(s)	34, 73
Eco147I	AGGCCT	1 cut(s)	397
Eco57I	CTGAAG	1 cut(s)	498
EcoO109I	RGGNCCY	1 cut(s)	105
EcoRI	GAATTC	1 cut(s)	331
FaeI	CATG	2 cut(s)	169, 421
FaiI	YATR	9 cut(s)	163, 167, 171, 413, 415, 419, 493, 495, 533
FatI	CATG	2 cut(s)	165, 417
FauNDI	CATATG	1 cut(s)	493
Fnu4HI	GCNGC	4 cut(s)	246, 362, 381, 384
FokI	GGATG	5 cut(s)	17, 80, 212, 550, 554
Fsp4HI	GCNGC	4 cut(s)	246, 362, 381, 384
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	4 cut(s)	246, 362, 381, 384
GsuI	CTGGAG	2 cut(s)	106, 203
HaeII	RGCGCY	1 cut(s)	136
HaeIII	GGCC	2 cut(s)	107, 397
HapII	CCGG	1 cut(s)	95
HhaI	GCGC	1 cut(s)	135
Hin1II	CATG	2 cut(s)	169, 421
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	1 cut(s)	227
Hpy188I	TCNGA	2 cut(s)	337, 478
Hpy188III	TCNNGA	2 cut(s)	564, 573
Hpy99I	CGWCG	1 cut(s)	84
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4V	TGCA	3 cut(s)	8, 248, 421
HpyF3I	CTNAG	5 cut(s)	122, 156, 210, 365, 392
Hsp92II	CATG	2 cut(s)	169, 421
HspAI	GCGC	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	34, 73
LmnI	GCTCC	2 cut(s)	87, 404
LpnPI	CCDG	7 cut(s)	70, 108, 167, 245, 296, 372, 549
Lsp1109I	GCAGC	3 cut(s)	232, 370, 373
MaeIII	GTNAC	3 cut(s)	15, 177, 255
MalI	GATC	2 cut(s)	36, 75
MboI	GATC	2 cut(s)	34, 73
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	4 cut(s)	145, 331, 351, 568
MnlI	CCTC	9 cut(s)	19, 24, 58, 284, 443, 484, 491, 494, 497
MseI	TTAA	3 cut(s)	111, 341, 446
MspA1I	CMGCKG	1 cut(s)	383
MspCI	CTTAAG	1 cut(s)	445
MspI	CCGG	1 cut(s)	95
NdeI	CATATG	1 cut(s)	493
NdeII	GATC	2 cut(s)	34, 73
NlaIII	CATG	2 cut(s)	169, 421
NlaIV	GGNNCC	1 cut(s)	508
NspI	RCATGY	2 cut(s)	169, 421
PceI	AGGCCT	1 cut(s)	397
PciI	ACATGT	1 cut(s)	165
PkrI	GCNGC	4 cut(s)	247, 363, 382, 385
PscI	ACATGT	1 cut(s)	165
PsiI	TTATAA	1 cut(s)	533
PspN4I	GGNNCC	1 cut(s)	508
PspPI	GGNCC	1 cut(s)	105
PstNI	CAGNNNCTG	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	73
RsaI	GTAC	3 cut(s)	59, 224, 548
RsaNI	GTAC	3 cut(s)	58, 223, 547
SaqAI	TTAA	3 cut(s)	111, 341, 446
SatI	GCNGC	4 cut(s)	246, 362, 381, 384
Sau3AI	GATC	2 cut(s)	34, 73
Sau96I	GGNCC	1 cut(s)	105
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	8 cut(s)	92, 271, 284, 325, 366, 409, 435, 476
SmlI	CTYRAG	2 cut(s)	53, 445
SmoI	CTYRAG	2 cut(s)	53, 445
Sse9I	AATT	4 cut(s)	145, 331, 351, 568
SseBI	AGGCCT	1 cut(s)	397
SsiI	CCGC	1 cut(s)	381
SspI	AATATT	1 cut(s)	115
StuI	AGGCCT	1 cut(s)	397
TaaI	ACNGT	1 cut(s)	177
TasI	AATT	4 cut(s)	145, 331, 351, 568
TatI	WGTACW	2 cut(s)	57, 546
TauI	GCSGC	1 cut(s)	383
Tru1I	TTAA	3 cut(s)	111, 341, 446
Tru9I	TTAA	3 cut(s)	111, 341, 446
TscAI	CASTG	1 cut(s)	560
TseI	GCWGC	3 cut(s)	245, 361, 383
TspDTI	ATGAA	1 cut(s)	186
TspGWI	ACGGA	3 cut(s)	68, 212, 439
TspRI	CASTG	1 cut(s)	560
Vha464I	CTTAAG	1 cut(s)	445
XapI	RAATTY	2 cut(s)	331, 568
XceI	RCATGY	2 cut(s)	169, 421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.