Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003644

Physical Location & Seq

Genomic Coordinates Reverse (-)

31356091 .. 31360717

Gene Structure 4627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG285500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCTCTTTCTTCCGTTGGAAAATGGAGGAGAAGCATAGCAGTCTCAGCAGCAGTGGCTCCTCTTCCTCTATCACATACCCGAAGCTTCCGATCAGACGCCGCCTTAGAAGCTCTATCCAAAGCCTCCGACGAAAAAGTCCCCTACTTGCTTCTCTACAACTACCCTTGTTTCTCCGGCGCCTTCTCCGCTCTCTTTGCTCACCTCTTCCACTCTCGCCTTAACCTACCATTCCTCTCTCTCCCTTTCTCTGCCGTCGAACCCTTCAGGGTCGATGATTTGTGTACTCGAGGACTGGAGAGGTGCTACTTCCTTGATTTTCTTGGCCCCAAAGGATTTGCCGTCGAGTTTGCAAGGAGAGCTTCGTGCGAGGTAATTGCTTTCGATCATCGAAAATCTGTACTACCGGAGATGCCCTCGGATGAGGATTGCCCGGACAATCTCACATTTCGAGTGAATACTGAAAAAAGTTGCTCTAGTGCTGTGTATGATTACTTCTCTGCTAAGCTTGCTGATGTTGAATGTCGTAATGGAATGGATGCAAGTTTGTTACAAGTTGAGGACAGGGATCGTGTGGAGATGGTGCTTAAGTACATTGAGGATGGAGATCTCCGTCGCTGGAGCTTACCGGATATTAGGGCGTTTAATATTGGACTTAGTGAATGGCGCTCAAAGTTGAATTGCTTTACTAATCCATACATGTATGAACAGTTACTGGAGATAAGTGCTACGGATGTTATTGCTAAGGGAAAGTCATATATATCTGCTCGCCAAAAGGCTGCAAATAAGTTACTGGACAAAGCTCTGAAAATAAGGTTGGGCAGAGGATTTTACGGGGAGTGTCTGGGAGTGAGAGCTGATGGGAATTCCGAGTTAAGTGATGAAATTGGCAAGCAACTTAGTGTAAAAAGTGCCGCTGCTGGCCTAAGGCCTATAGGAGCTGTTATATTCATGCAACGGAGAAACCTCAAAATGTGCTTAAGGAGTACTGATACTGCTACTGATACCTGTGAAGTTGCAAAGGCATATGGAGGAGGGGGCACCCCAATGGGTTTCAGGAAACTCAAGATGAACATGTCAAGGAATTGTAATTTGATGCTGTTGGTGGCGTATATGGGCTGGAAGAAGGCTGCTTTACAAATGGTCCTACTGTACCTCCCAAGGAAGAACCTCTTCTTTGCACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

395

Amino Acids

44.21

Weight (kDa)

9.04

Isoelectric Point (pI)

50.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09580 AT5G09580
fragaria_vesca	FvH4_1g23320 FvH4_1g23320
malus_domestica	MD10G1056400.v1.1
prunus_persica	Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1
pyrus_communis	pycom10g04330 pycom10g04340
rosa_chinensis	RchiOBHm_Chr2g0118131 RchiOBHm_Chr2g0118141 RchiOBHm_Chr2g0118161
rosa_laevigata	RLG00000018394 RLG00000018395 RLG00000018401
rosa_multiflora	Rmu_sc0001618.1_g000003 Rmu_sc0001618.1_g000008 Rmu_sc0001618.1_g000012 Rmu_sc0009463.1_g000001 Rmu_sc0009463.1_g000017
rosa_roxburghii	Rroxscaffold_2G00125850 Rroxscaffold_2G00125900 Rroxscaffold_3G00234990 Rroxscaffold_4G00309060
rosa_rugosa	Rorug02G0216300 Rorug02G0217100
rosa_samantha	Rh2AG273200 Rh2BG285500 Rh2CG410200 Rh6DG346000 Rh7BG104700
rosa_wichuraiana	Rw2G021570 Rw2G021590 Rw2G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
AccB1I	GGYRCC	2 cut(s)	179, 1040
AccBSI	CCGCTC	1 cut(s)	191
AciI	CCGC	3 cut(s)	102, 189, 915
AclWI	GGATC	1 cut(s)	576
AcsI	RAATTY	1 cut(s)	865
AcuI	CTGAAG	1 cut(s)	250
AcyI	GRCGYC	2 cut(s)	99, 180
AfaI	GTAC	5 cut(s)	286, 402, 593, 988, 1154
AflII	CTTAAG	2 cut(s)	587, 979
AflIII	ACRYGT	2 cut(s)	699, 1074
AgsI	TTSAA	2 cut(s)	521, 679
AjuI	GAANNNNNNNTTGG	2 cut(s)	800, 832
AluBI	AGCT	8 cut(s)	87, 113, 362, 508, 624, 803, 857, 941
AluI	AGCT	8 cut(s)	87, 113, 362, 508, 624, 803, 857, 941
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	1 cut(s)	576
AlwNI	CAGNNNCTG	1 cut(s)	715
Ama87I	CYCGRG	1 cut(s)	288
AoxI	GGCC	3 cut(s)	325, 922, 929
ApeKI	GCWGC	4 cut(s)	50, 779, 917, 1130
ApoI	RAATTY	1 cut(s)	865
Asp700I	GAANNNNTTC	1 cut(s)	1172
AspLEI	GCGC	2 cut(s)	182, 669
AspS9I	GGNCC	2 cut(s)	326, 1144
AsuC2I	CCSGG	1 cut(s)	434
AsuHPI	GGTGA	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	288
AvaII	GGWCC	1 cut(s)	1144
AxyI	CCTNAGG	1 cut(s)	926
BaeGI	GKGCMC	1 cut(s)	1043
BanI	GGYRCC	2 cut(s)	179, 1040
BarI	GAAGNNNNNNTAC	2 cut(s)	479, 511
BbvI	GCAGC	4 cut(s)	62, 766, 904, 1117
BccI	CCATC	3 cut(s)	574, 596, 854
BceAI	ACGGC	2 cut(s)	239, 326
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BcnI	CCSGG	1 cut(s)	434
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	1 cut(s)	477
BfmI	CTRYAG	1 cut(s)	933
BfoI	RGCGCY	2 cut(s)	183, 670
BfrI	CTTAAG	2 cut(s)	587, 979
BglII	AGATCT	1 cut(s)	607
BisI	GCNGC	6 cut(s)	51, 102, 780, 915, 918, 1131
BlpI	GCTNAGC	1 cut(s)	504
BlsI	GCNGC	6 cut(s)	52, 103, 781, 916, 919, 1132
BmcAI	AGTACT	1 cut(s)	988
Bme1390I	CCNGG	1 cut(s)	434
Bme18I	GGWCC	1 cut(s)	1144
BmeT110I	CYCGRG	1 cut(s)	288
BmgT120I	GGNCC	2 cut(s)	326, 1144
BmiI	GGNNCC	4 cut(s)	60, 181, 328, 1042
BmrFI	CCNGG	1 cut(s)	434
BmsI	GCATC	3 cut(s)	402, 529, 1086
BplI	GAGNNNNNCTC	2 cut(s)	401, 433
BpmI	CTGGAG	3 cut(s)	317, 640, 737
Bpu10I	CCTNAGC	1 cut(s)	744
Bpu1102I	GCTNAGC	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	1049
BpuMI	CCSGG	1 cut(s)	434
BsaBI	GATNNNNATC	1 cut(s)	606
BsaHI	GRCGYC	2 cut(s)	99, 180
BsaJI	CCNNGG	2 cut(s)	417, 1160
BsaWI	WCCGGW	2 cut(s)	406, 628
BsaXI	ACNNNNNCTCC	2 cut(s)	1140, 1170
Bse1I	ACTGG	3 cut(s)	300, 720, 798
Bse21I	CCTNAGG	1 cut(s)	926
Bse8I	GATNNNNATC	1 cut(s)	606
BseDI	CCNNGG	2 cut(s)	417, 1160
BseGI	GGATG	4 cut(s)	427, 544, 607, 739
BseJI	GATNNNNATC	1 cut(s)	606
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	3 cut(s)	300, 720, 798
BseRI	GAGGAG	3 cut(s)	43, 51, 1047
BseSI	GKGCMC	1 cut(s)	1043
BseXI	GCAGC	4 cut(s)	62, 766, 904, 1117
BshFI	GGCC	3 cut(s)	327, 924, 931
BshNI	GGYRCC	2 cut(s)	179, 1040
BsiHKCI	CYCGRG	1 cut(s)	288
BsiSI	CCGG	4 cut(s)	177, 407, 434, 629
BslFI	GGGAC	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	3 cut(s)	327, 924, 931
BsoBI	CYCGRG	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	1043
Bsp143I	GATC	4 cut(s)	92, 385, 568, 607
Bsp1720I	GCTNAGC	1 cut(s)	504
BspACI	CCGC	3 cut(s)	102, 189, 915
BspANI	GGCC	3 cut(s)	327, 924, 931
BspCNI	CTCAG	1 cut(s)	59
BspLI	GGNNCC	4 cut(s)	60, 181, 328, 1042
BspPI	GGATC	1 cut(s)	576
BspT107I	GGYRCC	2 cut(s)	179, 1040
BspTI	CTTAAG	2 cut(s)	587, 979
BsrBI	CCGCTC	1 cut(s)	191
BsrI	ACTGG	3 cut(s)	300, 720, 798
BssECI	CCNNGG	2 cut(s)	417, 1160
BssMI	GATC	4 cut(s)	92, 385, 568, 607
BssNI	GRCGYC	2 cut(s)	99, 180
BssT1I	CCWWGG	1 cut(s)	1160
Bst4CI	ACNGT	2 cut(s)	711, 1152
Bst6I	CTCTTC	3 cut(s)	69, 212, 1178
BstACI	GRCGYC	2 cut(s)	99, 180
BstAFI	CTTAAG	2 cut(s)	587, 979
BstC8I	GCNNGC	4 cut(s)	510, 769, 893, 922
BstDEI	CTNAG	8 cut(s)	46, 106, 504, 656, 744, 899, 926, 1185
BstF5I	GGATG	4 cut(s)	427, 544, 607, 739
BstH2I	RGCGCY	2 cut(s)	183, 670
BstHHI	GCGC	2 cut(s)	182, 669
BstKTI	GATC	4 cut(s)	95, 388, 571, 610
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	4 cut(s)	92, 385, 568, 607
BstMWI	GCNNNNNNNGC	7 cut(s)	47, 56, 110, 188, 197, 359, 509
BstNSI	RCATGY	2 cut(s)	703, 1078
BstSCI	CCNGG	1 cut(s)	432
BstSFI	CTRYAG	1 cut(s)	933
BstSLI	GKGCMC	1 cut(s)	1043
BstV1I	GCAGC	4 cut(s)	62, 766, 904, 1117
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
Bsu36I	CCTNAGG	1 cut(s)	926
BsuRI	GGCC	3 cut(s)	327, 924, 931
BtsCI	GGATG	4 cut(s)	427, 544, 607, 739
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	4 cut(s)	510, 769, 893, 922
CaiI	CAGNNNCTG	1 cut(s)	715
CfoI	GCGC	2 cut(s)	182, 669
Cfr13I	GGNCC	2 cut(s)	326, 1144
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	5 cut(s)	285, 401, 592, 987, 1153
CviAII	CATG	3 cut(s)	700, 952, 1075
CviQI	GTAC	5 cut(s)	285, 401, 592, 987, 1153
DdeI	CTNAG	8 cut(s)	46, 106, 504, 656, 744, 899, 926, 1185
DinI	GGCGCC	1 cut(s)	181
DpnI	GATC	4 cut(s)	94, 387, 570, 609
DpnII	GATC	4 cut(s)	92, 385, 568, 607
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
Eam1104I	CTCTTC	3 cut(s)	69, 212, 1178
EarI	CTCTTC	3 cut(s)	69, 212, 1178
Eco130I	CCWWGG	1 cut(s)	1160
Eco147I	AGGCCT	1 cut(s)	931
Eco47I	GGWCC	1 cut(s)	1144
Eco57I	CTGAAG	1 cut(s)	250
Eco81I	CCTNAGG	1 cut(s)	926
Eco88I	CYCGRG	1 cut(s)	288
EcoRI	GAATTC	1 cut(s)	865
EcoT14I	CCWWGG	1 cut(s)	1160
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	1160
FaeI	CATG	3 cut(s)	703, 955, 1078
FalI	AAGNNNNNCTT	3 cut(s)	346, 378, 1157
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	3 cut(s)	699, 951, 1074
FauNDI	CATATG	1 cut(s)	1027
Fnu4HI	GCNGC	6 cut(s)	51, 102, 780, 915, 918, 1131
FokI	GGATG	4 cut(s)	434, 551, 614, 746
Fsp4HI	GCNGC	6 cut(s)	51, 102, 780, 915, 918, 1131
FspBI	CTAG	1 cut(s)	477
GlaI	GCGC	2 cut(s)	181, 668
GluI	GCNGC	6 cut(s)	51, 102, 780, 915, 918, 1131
GsuI	CTGGAG	3 cut(s)	317, 640, 737
HaeII	RGCGCY	2 cut(s)	183, 670
HaeIII	GGCC	3 cut(s)	327, 924, 931
HapII	CCGG	4 cut(s)	177, 407, 434, 629
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	2 cut(s)	182, 669
Hin1I	GRCGYC	2 cut(s)	99, 180
Hin1II	CATG	3 cut(s)	703, 955, 1078
Hin6I	GCGC	2 cut(s)	180, 667
HinP1I	GCGC	2 cut(s)	180, 667
HindIII	AAGCTT	2 cut(s)	85, 506
HpaII	CCGG	4 cut(s)	177, 407, 434, 629
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	6 cut(s)	92, 97, 130, 421, 807, 871
Hpy188III	TCNNGA	2 cut(s)	1057, 1066
Hpy8I	GTNNAC	1 cut(s)	285
Hpy99I	CGWCG	4 cut(s)	134, 260, 347, 618
HpyAV	CCTTC	3 cut(s)	193, 274, 1120
HpyCH4III	ACNGT	2 cut(s)	711, 1152
HpyCH4V	TGCA	6 cut(s)	353, 542, 782, 955, 1019, 1181
HpyF10VI	GCNNNNNNNGC	7 cut(s)	47, 56, 110, 188, 197, 359, 509
HpyF3I	CTNAG	8 cut(s)	46, 106, 504, 656, 744, 899, 926, 1185
Hsp92I	GRCGYC	2 cut(s)	99, 180
Hsp92II	CATG	3 cut(s)	703, 955, 1078
HspAI	GCGC	2 cut(s)	180, 667
KasI	GGCGCC	1 cut(s)	179
Kzo9I	GATC	4 cut(s)	92, 385, 568, 607
LmnI	GCTCC	3 cut(s)	64, 621, 938
Lsp1109I	GCAGC	4 cut(s)	62, 766, 904, 1117
LweI	GCATC	3 cut(s)	402, 529, 1086
MaeI	CTAG	1 cut(s)	477
MaeIII	GTNAC	3 cut(s)	549, 711, 789
MalI	GATC	4 cut(s)	94, 387, 570, 609
MbiI	CCGCTC	1 cut(s)	191
MboI	GATC	4 cut(s)	92, 385, 568, 607
MboII	GAAGA	6 cut(s)	3, 56, 199, 1135, 1165, 1177
MflI	RGATCY	1 cut(s)	607
MhlI	GDGCHC	1 cut(s)	1043
MluCI	AATT	6 cut(s)	375, 679, 865, 885, 1084, 1090
Mly113I	GGCGCC	1 cut(s)	180
MmeI	TCCRAC	1 cut(s)	153
MroXI	GAANNNNTTC	1 cut(s)	1172
MseI	TTAA	5 cut(s)	222, 588, 645, 875, 980
MslI	CAYNNNNRTG	1 cut(s)	1046
MspA1I	CMGCKG	1 cut(s)	917
MspCI	CTTAAG	2 cut(s)	587, 979
MspI	CCGG	4 cut(s)	177, 407, 434, 629
MspR9I	CCNGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	7 cut(s)	47, 56, 110, 188, 197, 359, 509
NarI	GGCGCC	1 cut(s)	180
NciI	CCSGG	1 cut(s)	434
NdeI	CATATG	1 cut(s)	1027
NdeII	GATC	4 cut(s)	92, 385, 568, 607
NlaIII	CATG	3 cut(s)	703, 955, 1078
NlaIV	GGNNCC	4 cut(s)	60, 181, 328, 1042
NspI	RCATGY	2 cut(s)	703, 1078
PaeR7I	CTCGAG	1 cut(s)	288
PceI	AGGCCT	1 cut(s)	931
PciI	ACATGT	2 cut(s)	699, 1074
PdmI	GAANNNNTTC	1 cut(s)	1172
PkrI	GCNGC	6 cut(s)	52, 103, 781, 916, 919, 1132
PluTI	GGCGCC	1 cut(s)	183
PscI	ACATGT	2 cut(s)	699, 1074
PspN4I	GGNNCC	4 cut(s)	60, 181, 328, 1042
PspPI	GGNCC	2 cut(s)	326, 1144
PspXI	VCTCGAGB	1 cut(s)	288
PstNI	CAGNNNCTG	1 cut(s)	715
PsuI	RGATCY	1 cut(s)	607
RsaI	GTAC	5 cut(s)	286, 402, 593, 988, 1154
RsaNI	GTAC	5 cut(s)	285, 401, 592, 987, 1153
RseI	CAYNNNNRTG	1 cut(s)	1046
SaqAI	TTAA	5 cut(s)	222, 588, 645, 875, 980
SatI	GCNGC	6 cut(s)	51, 102, 780, 915, 918, 1131
Sau3AI	GATC	4 cut(s)	92, 385, 568, 607
Sau96I	GGNCC	2 cut(s)	326, 1144
ScaI	AGTACT	1 cut(s)	988
ScrFI	CCNGG	1 cut(s)	434
SduI	GDGCHC	1 cut(s)	1043
SfaNI	GCATC	3 cut(s)	402, 529, 1086
SfcI	CTRYAG	1 cut(s)	933
SfoI	GGCGCC	1 cut(s)	181
Sfr274I	CTCGAG	1 cut(s)	288
SinI	GGWCC	1 cut(s)	1144
SlaI	CTCGAG	1 cut(s)	288
SmiMI	CAYNNNNRTG	1 cut(s)	1046
SmlI	CTYRAG	4 cut(s)	288, 587, 979, 1064
SmoI	CTYRAG	4 cut(s)	288, 587, 979, 1064
Sse9I	AATT	6 cut(s)	375, 679, 865, 885, 1084, 1090
SseBI	AGGCCT	1 cut(s)	931
SsiI	CCGC	3 cut(s)	102, 189, 915
SspDI	GGCGCC	1 cut(s)	179
SspI	AATATT	1 cut(s)	649
SspMI	CTAG	1 cut(s)	477
StuI	AGGCCT	1 cut(s)	931
StyD4I	CCNGG	1 cut(s)	432
StyI	CCWWGG	1 cut(s)	1160
TaaI	ACNGT	2 cut(s)	711, 1152
TaqI	TCGA	7 cut(s)	258, 273, 289, 345, 384, 391, 451
TasI	AATT	6 cut(s)	375, 679, 865, 885, 1084, 1090
TatI	WGTACW	4 cut(s)	284, 400, 591, 986
TauI	GCSGC	2 cut(s)	104, 917
Tru1I	TTAA	5 cut(s)	222, 588, 645, 875, 980
Tru9I	TTAA	5 cut(s)	222, 588, 645, 875, 980
TscAI	CASTG	1 cut(s)	60
TseI	GCWGC	4 cut(s)	50, 779, 917, 1130
TspDTI	ATGAA	4 cut(s)	720, 897, 940, 1085
TspGWI	ACGGA	4 cut(s)	4, 602, 746, 973
TspRI	CASTG	1 cut(s)	60
Vha464I	CTTAAG	2 cut(s)	587, 979
VpaK11BI	GGWCC	1 cut(s)	1144
XapI	RAATTY	1 cut(s)	865
XceI	RCATGY	2 cut(s)	703, 1078
XhoI	CTCGAG	1 cut(s)	288
XmnI	GAANNNNTTC	1 cut(s)	1172
XspI	CTAG	1 cut(s)	477
ZrmI	AGTACT	1 cut(s)	988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.