Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003644

Physical Location & Seq

Genomic Coordinates Forward (+)

7714738 .. 7731625

Gene Structure 16888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1056400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGCCTCATTCCCTTGTCGGAAAATGGAGAACCACCATCTTTGCGCCGGCTTCTCCGCTGTCACAAGCCCGGAGCTTCCGTTCAGACGCAGCGTTCGAAGCCCTGGCCAAAGCCTCTCAAGACAAAGTTCCCAACTTGCTTCTTTACAACTACCCTTCTTTCTCCGGAGCTTTCTCCGCTCTATTCGCTCATCTCTTTCACTCTCGCCTCAACCTCCCCTTTCTTTCTCTACCCTTCTCTTCCGTCGAACCCTTCAGAGTTGATGAGTTGCGGACTGAAGGGCTGGAAAGGTGCTATCTTGTTGATTTTCTTGGCCGGGAGGGATATGCGGTCGAGCTTGCGCAGAGAGCTTCGTGCGAGGTAATTGCTTTTGATCATCGAAAAAGGGTACTTCCACGGATACCCTCTAAGGAAGATTGTCCAAAGAACCTCACATTTCATGTCAATCTTGAAAAGAGCAGCTCTAGGGCTGTGTATGACTACTTTTCAGCTCAACTGGCCGGTATTAAATATGCTAATGGAATGGATGCAAGTTTATTAGAACCTGAGGACAGAGATCGTGTAGAAATGGTACTTAAGTACATTGAGGATGGAGATCTCCGTCGGTGGAGCTTGCCTGATATTAAGGCATTTAGCATTGGACTCGGCGAATGGCGCTCCAAGTTAAATTGTGTTACTAATCCGTACATGTATGAACAGTTACTGGAAATAAATGCTGTGGATGTAATTGCCAAGGGGATGTCTTATATTTCCGCTCGCCAGAAAGCTGCAAACAAGTTACTGGATAAGGTTTTGAAAATAAGACTGGGCAGAGGGTTTTATGGGGAGTGTCTGGGAGTTAGAGCAGACGGGAATTCTGAGTTAAGTGATGAAATGGCCAAGCAGCTTAGTGTAGAAAGTGCTGCTGCTGGTCTTAGGCCTATTGGAGCGGTTATATTCATGCAACGAAGAAACCTGAAAATGTGTTTAAGGAGTACTGATACTGCTACTGATACCTCTGAAGTTGCAAAGGCATTTGGTGGAGGAGGCTCCCCAAGTTCTAGTTCTTTTATTATAAGAATGGATGAGTACAATCAGTGGGTTTCAGGATATTCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

367

Amino Acids

40.92

Weight (kDa)

8.61

Isoelectric Point (pI)

49.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09580 AT5G09580
fragaria_vesca	FvH4_1g23320 FvH4_1g23320
malus_domestica	MD10G1056400.v1.1
prunus_persica	Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1
pyrus_communis	pycom10g04330 pycom10g04340
rosa_chinensis	RchiOBHm_Chr2g0118131 RchiOBHm_Chr2g0118141 RchiOBHm_Chr2g0118161
rosa_laevigata	RLG00000018394 RLG00000018395 RLG00000018401
rosa_multiflora	Rmu_sc0001618.1_g000003 Rmu_sc0001618.1_g000008 Rmu_sc0001618.1_g000012 Rmu_sc0009463.1_g000001 Rmu_sc0009463.1_g000017
rosa_roxburghii	Rroxscaffold_2G00125850 Rroxscaffold_2G00125900 Rroxscaffold_3G00234990 Rroxscaffold_4G00309060
rosa_rugosa	Rorug02G0216300 Rorug02G0217100
rosa_samantha	Rh2AG273200 Rh2BG285500 Rh2CG410200 Rh6DG346000 Rh7BG104700
rosa_wichuraiana	Rw2G021570 Rw2G021590 Rw2G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1055
Acc16I	TGCGCA	1 cut(s)	342
AccBSI	CCGCTC	3 cut(s)	179, 755, 929
AccIII	TCCGGA	1 cut(s)	164
AciI	CCGC	6 cut(s)	56, 177, 271, 329, 753, 929
AcoI	YGGCCR	4 cut(s)	105, 313, 498, 876
AcsI	RAATTY	1 cut(s)	853
AcuI	CTGAAG	3 cut(s)	238, 297, 1020
AfaI	GTAC	6 cut(s)	390, 573, 581, 686, 976, 1070
AflII	CTTAAG	1 cut(s)	575
AflIII	ACRYGT	1 cut(s)	687
AgsI	TTSAA	3 cut(s)	452, 796, 1095
AjnI	CCWGG	1 cut(s)	102
AjuI	GAANNNNNNNTTGG	2 cut(s)	1027, 1059
AloI	GAACNNNNNNTCC	2 cut(s)	64, 96
AluBI	AGCT	9 cut(s)	75, 170, 337, 350, 462, 491, 612, 767, 886
AluI	AGCT	9 cut(s)	75, 170, 337, 350, 462, 491, 612, 767, 886
AlwNI	CAGNNNCTG	1 cut(s)	703
Aor13HI	TCCGGA	1 cut(s)	164
AoxI	GGCC	5 cut(s)	105, 313, 498, 876, 917
ApeKI	GCWGC	6 cut(s)	89, 459, 767, 883, 902, 905
ApoI	RAATTY	1 cut(s)	853
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AspLEI	GCGC	3 cut(s)	46, 343, 657
AsuC2I	CCSGG	2 cut(s)	70, 317
AsuII	TTCGAA	1 cut(s)	96
AxyI	CCTNAGG	1 cut(s)	546
BaeI	ACNNNNGTAYC	2 cut(s)	563, 596
BalI	TGGCCA	2 cut(s)	107, 878
BbvI	GCAGC	6 cut(s)	101, 471, 754, 889, 892, 895
BccI	CCATC	2 cut(s)	44, 584
BcgI	CGANNNNNNTGC	4 cut(s)	347, 381, 625, 659
BciT130I	CCWGG	1 cut(s)	104
BciVI	GTATCC	1 cut(s)	393
BclI	TGATCA	1 cut(s)	373
BcnI	CCSGG	2 cut(s)	70, 317
BfaI	CTAG	2 cut(s)	465, 1041
BfoI	RGCGCY	1 cut(s)	658
BfrI	CTTAAG	1 cut(s)	575
BfuI	GTATCC	1 cut(s)	393
BglII	AGATCT	1 cut(s)	595
BisI	GCNGC	6 cut(s)	90, 460, 768, 884, 903, 906
BlsI	GCNGC	6 cut(s)	91, 461, 769, 885, 904, 907
BmcAI	AGTACT	1 cut(s)	976
Bme1390I	CCNGG	3 cut(s)	70, 104, 317
BmiI	GGNNCC	1 cut(s)	1030
BmrFI	CCNGG	3 cut(s)	70, 104, 317
BmrI	ACTGGG	1 cut(s)	815
BmsI	GCATC	1 cut(s)	517
BmuI	ACTGGG	1 cut(s)	815
Bpu14I	TTCGAA	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	102
BpuMI	CCSGG	2 cut(s)	70, 317
BsaBI	GATNNNNATC	1 cut(s)	594
BsaJI	CCNNGG	3 cut(s)	102, 395, 732
BsaWI	WCCGGW	1 cut(s)	164
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bse118I	RCCGGY	2 cut(s)	46, 500
Bse1I	ACTGG	4 cut(s)	501, 708, 786, 810
Bse21I	CCTNAGG	1 cut(s)	546
Bse8I	GATNNNNATC	1 cut(s)	594
BseAI	TCCGGA	1 cut(s)	164
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	3 cut(s)	102, 395, 732
BseGI	GGATG	5 cut(s)	532, 595, 727, 744, 1069
BseJI	GATNNNNATC	1 cut(s)	594
BseMII	CTCAG	2 cut(s)	537, 849
BseNI	ACTGG	4 cut(s)	501, 708, 786, 810
BseRI	GAGGAG	1 cut(s)	1038
BseXI	GCAGC	6 cut(s)	101, 471, 754, 889, 892, 895
Bsh1285I	CGRYCG	1 cut(s)	333
BshFI	GGCC	5 cut(s)	107, 315, 500, 878, 919
BsiEI	CGRYCG	1 cut(s)	333
BsiSI	CCGG	5 cut(s)	47, 70, 165, 316, 501
BsnI	GGCC	5 cut(s)	107, 315, 500, 878, 919
Bsp119I	TTCGAA	1 cut(s)	96
Bsp13I	TCCGGA	1 cut(s)	164
Bsp143I	GATC	3 cut(s)	373, 556, 595
BspACI	CCGC	6 cut(s)	56, 177, 271, 329, 753, 929
BspANI	GGCC	5 cut(s)	107, 315, 500, 878, 919
BspCNI	CTCAG	2 cut(s)	538, 850
BspEI	TCCGGA	1 cut(s)	164
BspLI	GGNNCC	1 cut(s)	1030
BspT104I	TTCGAA	1 cut(s)	96
BspTI	CTTAAG	1 cut(s)	575
BsrBI	CCGCTC	3 cut(s)	179, 755, 929
BsrFI	RCCGGY	2 cut(s)	46, 500
BsrI	ACTGG	4 cut(s)	501, 708, 786, 810
BssAI	RCCGGY	2 cut(s)	46, 500
BssECI	CCNNGG	3 cut(s)	102, 395, 732
BssMI	GATC	3 cut(s)	373, 556, 595
BssT1I	CCWWGG	1 cut(s)	732
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	699
Bst6I	CTCTTC	1 cut(s)	244
BstAFI	CTTAAG	1 cut(s)	575
BstBI	TTCGAA	1 cut(s)	96
BstC8I	GCNNGC	4 cut(s)	48, 339, 614, 757
BstDEI	CTNAG	5 cut(s)	408, 546, 858, 887, 914
BstDSI	CCRYGG	1 cut(s)	395
BstF5I	GGATG	5 cut(s)	532, 595, 727, 744, 1069
BstH2I	RGCGCY	1 cut(s)	658
BstHHI	GCGC	3 cut(s)	46, 343, 657
BstKTI	GATC	3 cut(s)	376, 559, 598
BstMBI	GATC	3 cut(s)	373, 556, 595
BstMCI	CGRYCG	1 cut(s)	333
BstMWI	GCNNNNNNNGC	6 cut(s)	98, 176, 185, 347, 497, 654
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	1 cut(s)	691
BstSCI	CCNGG	3 cut(s)	68, 102, 315
BstV1I	GCAGC	6 cut(s)	101, 471, 754, 889, 892, 895
BstX2I	RGATCY	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	595
Bsu36I	CCTNAGG	1 cut(s)	546
BsuI	GTATCC	1 cut(s)	393
BsuRI	GGCC	5 cut(s)	107, 315, 500, 878, 919
BtgI	CCRYGG	1 cut(s)	395
BtsCI	GGATG	5 cut(s)	532, 595, 727, 744, 1069
BtsIMutI	CAGTG	1 cut(s)	1082
Cac8I	GCNNGC	4 cut(s)	48, 339, 614, 757
CaiI	CAGNNNCTG	1 cut(s)	703
CfoI	GCGC	3 cut(s)	46, 343, 657
Cfr10I	RCCGGY	2 cut(s)	46, 500
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	6 cut(s)	389, 572, 580, 685, 975, 1069
CspCI	CAANNNNNGTGG	2 cut(s)	22, 57
CviAII	CATG	3 cut(s)	440, 688, 940
CviQI	GTAC	6 cut(s)	389, 572, 580, 685, 975, 1069
DdeI	CTNAG	5 cut(s)	408, 546, 858, 887, 914
DpnI	GATC	3 cut(s)	375, 558, 597
DpnII	GATC	3 cut(s)	373, 556, 595
EaeI	YGGCCR	4 cut(s)	105, 313, 498, 876
Eam1104I	CTCTTC	1 cut(s)	244
EarI	CTCTTC	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	732
Eco147I	AGGCCT	1 cut(s)	919
Eco57I	CTGAAG	3 cut(s)	238, 297, 1020
Eco81I	CCTNAGG	1 cut(s)	546
EcoRI	GAATTC	1 cut(s)	853
EcoRII	CCWGG	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	732
ErhI	CCWWGG	1 cut(s)	732
FaeI	CATG	3 cut(s)	443, 691, 943
FatI	CATG	3 cut(s)	439, 687, 939
FbaI	TGATCA	1 cut(s)	373
Fnu4HI	GCNGC	6 cut(s)	90, 460, 768, 884, 903, 906
FokI	GGATG	5 cut(s)	539, 602, 734, 751, 1076
Fsp4HI	GCNGC	6 cut(s)	90, 460, 768, 884, 903, 906
FspBI	CTAG	2 cut(s)	465, 1041
FspI	TGCGCA	1 cut(s)	342
GlaI	GCGC	3 cut(s)	45, 342, 656
GluI	GCNGC	6 cut(s)	90, 460, 768, 884, 903, 906
HaeII	RGCGCY	1 cut(s)	658
HaeIII	GGCC	5 cut(s)	107, 315, 500, 878, 919
HapII	CCGG	5 cut(s)	47, 70, 165, 316, 501
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	3 cut(s)	46, 343, 657
Hin1II	CATG	3 cut(s)	443, 691, 943
Hin6I	GCGC	3 cut(s)	44, 341, 655
HinP1I	GCGC	3 cut(s)	44, 341, 655
HinfI	GANTC	1 cut(s)	642
HpaII	CCGG	5 cut(s)	47, 70, 165, 316, 501
Hpy188I	TCNGA	5 cut(s)	20, 85, 257, 859, 1000
Hpy188III	TCNNGA	5 cut(s)	119, 165, 449, 1086, 1095
Hpy99I	CGWCG	2 cut(s)	248, 606
HpyAV	CCTTC	4 cut(s)	165, 244, 262, 272
HpyCH4III	ACNGT	1 cut(s)	699
HpyCH4V	TGCA	4 cut(s)	530, 770, 943, 1007
HpyF10VI	GCNNNNNNNGC	6 cut(s)	98, 176, 185, 347, 497, 654
HpyF3I	CTNAG	5 cut(s)	408, 546, 858, 887, 914
Hsp92II	CATG	3 cut(s)	443, 691, 943
HspAI	GCGC	3 cut(s)	44, 341, 655
Kpn2I	TCCGGA	1 cut(s)	164
KroI	GCCGGC	1 cut(s)	46
KroNI	GCCGGC	1 cut(s)	48
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	3 cut(s)	373, 556, 595
LmnI	GCTCC	6 cut(s)	72, 167, 609, 662, 926, 1034
Lsp1109I	GCAGC	6 cut(s)	101, 471, 754, 889, 892, 895
LweI	GCATC	1 cut(s)	517
MaeI	CTAG	2 cut(s)	465, 1041
MaeIII	GTNAC	4 cut(s)	60, 673, 699, 777
MalI	GATC	3 cut(s)	375, 558, 597
MbiI	CCGCTC	3 cut(s)	179, 755, 929
MboI	GATC	3 cut(s)	373, 556, 595
MboII	GAAGA	3 cut(s)	231, 425, 960
MflI	RGATCY	1 cut(s)	595
MlsI	TGGCCA	2 cut(s)	107, 878
MluCI	AATT	4 cut(s)	363, 667, 726, 853
MluNI	TGGCCA	2 cut(s)	107, 878
MlyI	GAGTC	1 cut(s)	636
Mox20I	TGGCCA	2 cut(s)	107, 878
MroI	TCCGGA	1 cut(s)	164
MroNI	GCCGGC	1 cut(s)	46
MscI	TGGCCA	2 cut(s)	107, 878
MseI	TTAA	6 cut(s)	507, 576, 624, 665, 863, 968
Msp20I	TGGCCA	2 cut(s)	107, 878
MspA1I	CMGCKG	1 cut(s)	58
MspCI	CTTAAG	1 cut(s)	575
MspI	CCGG	5 cut(s)	47, 70, 165, 316, 501
MspR9I	CCNGG	3 cut(s)	70, 104, 317
MvaI	CCWGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	6 cut(s)	98, 176, 185, 347, 497, 654
NaeI	GCCGGC	1 cut(s)	48
NciI	CCSGG	2 cut(s)	70, 317
NdeII	GATC	3 cut(s)	373, 556, 595
NgoMIV	GCCGGC	1 cut(s)	46
NlaIII	CATG	3 cut(s)	443, 691, 943
NlaIV	GGNNCC	1 cut(s)	1030
NmeAIII	GCCGAG	1 cut(s)	624
NmuCI	GTSAC	1 cut(s)	60
NsbI	TGCGCA	1 cut(s)	342
NspI	RCATGY	1 cut(s)	691
NspV	TTCGAA	1 cut(s)	96
PceI	AGGCCT	1 cut(s)	919
PciI	ACATGT	1 cut(s)	687
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PdiI	GCCGGC	1 cut(s)	48
PkrI	GCNGC	6 cut(s)	91, 461, 769, 885, 904, 907
PleI	GAGTC	1 cut(s)	636
PpsI	GAGTC	1 cut(s)	636
PscI	ACATGT	1 cut(s)	687
PsiI	TTATAA	1 cut(s)	1055
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	1030
PstNI	CAGNNNCTG	1 cut(s)	703
PsuI	RGATCY	1 cut(s)	595
RsaI	GTAC	6 cut(s)	390, 573, 581, 686, 976, 1070
RsaNI	GTAC	6 cut(s)	389, 572, 580, 685, 975, 1069
SaqAI	TTAA	6 cut(s)	507, 576, 624, 665, 863, 968
SatI	GCNGC	6 cut(s)	90, 460, 768, 884, 903, 906
Sau3AI	GATC	3 cut(s)	373, 556, 595
ScaI	AGTACT	1 cut(s)	976
SchI	GAGTC	1 cut(s)	636
ScrFI	CCNGG	3 cut(s)	70, 104, 317
SfaNI	GCATC	1 cut(s)	517
SfuI	TTCGAA	1 cut(s)	96
SmlI	CTYRAG	2 cut(s)	117, 575
SmoI	CTYRAG	2 cut(s)	117, 575
Sse9I	AATT	4 cut(s)	363, 667, 726, 853
SseBI	AGGCCT	1 cut(s)	919
SsiI	CCGC	6 cut(s)	56, 177, 271, 329, 753, 929
SspMI	CTAG	2 cut(s)	465, 1041
StuI	AGGCCT	1 cut(s)	919
StyD4I	CCNGG	3 cut(s)	68, 102, 315
StyI	CCWWGG	1 cut(s)	732
TaaI	ACNGT	1 cut(s)	699
TaqI	TCGA	4 cut(s)	96, 246, 333, 379
TasI	AATT	4 cut(s)	363, 667, 726, 853
TatI	WGTACW	3 cut(s)	579, 974, 1068
Tru1I	TTAA	6 cut(s)	507, 576, 624, 665, 863, 968
Tru9I	TTAA	6 cut(s)	507, 576, 624, 665, 863, 968
TscAI	CASTG	1 cut(s)	1082
TseFI	GTSAC	1 cut(s)	60
TseI	GCWGC	6 cut(s)	89, 459, 767, 883, 902, 905
Tsp45I	GTSAC	1 cut(s)	60
TspDTI	ATGAA	4 cut(s)	428, 708, 885, 928
TspGWI	ACGGA	5 cut(s)	68, 232, 412, 590, 672
TspRI	CASTG	1 cut(s)	1082
Vha464I	CTTAAG	1 cut(s)	575
XapI	RAATTY	1 cut(s)	853
XceI	RCATGY	1 cut(s)	691
XspI	CTAG	2 cut(s)	465, 1041
ZrmI	AGTACT	1 cut(s)	976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.