Rw2G021570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0003644
Physical Location & Seq
Reverse (-)
29968802 .. 29973079
4278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G021570.1

Sequence Viewer

Length: 741 bp
ATGAGGATTCATGGTGTGGTGGCAGAACTGCCACTTATGGCAACTGGGTTTGAGCACTTGTGCAAGATTTTGATGAATGAGATTGAGAACTGGCTTAAGGACTCTGGGATTGAGAGGCTTGTTTTGCCTTTGGAGCAAAGTGTGCTGAAGACATGGACTAGTAGTTCAATTGGGTTTTTGACTATGACTGAGGATGAGAAAGCAGATCTCTTCTCATCACTTATGATTGCATGGATTACCAGGACAGTGTTGTGGGTAATTGCTTTCGATCATCGAAAATCTGTACTACCGGAGATGCGCTCGGATGAGGATTGCCCGGACAATCTCACATTTCGAGTGAATACTGAAAAGAGTAGCTCTAGTGCTGTGTATGATTACTTCTCTGCTAAGCTTGCTGATGTTGAATGTCGTAATGGAATGGATGCAAGTTTGTTACAAGTTGAGGACAGGGATCGTGTGGAGATGGTGCTTAAGTACATTGAGGATGGAGATCTCCGTCACTGGAGCTTACCGGATATTAGGGCGTTTAATATTGGACTTGGTGAATGGCGCTCAAAGTTGAATTGCTTTACTAATCCATACATGTATGAACAGTTACTGGAGATAAGTGCTGTGGATGTTGTCGCTATGGGGAAGTCTTATATTTCTGCTAGCCAAAAGGCTGCAAATAAGTTACTGGATAAAGCTCTGAAAATAAGGTTGGGCAGAGGATTTTACCCGGAGTGTCTGGACAGTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

246

Amino Acids

28.07

Weight (kDa)

5.05

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IDM1_C PF23209 1 - 82 8.2e-13 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 459
AcuI CTGAAG 1 cut(s) 167
AfaI GTAC 2 cut(s) 285, 476
AflII CTTAAG 2 cut(s) 95, 470
AflIII ACRYGT 1 cut(s) 582
AgsI TTSAA 3 cut(s) 168, 404, 562
AhlI ACTAGT 1 cut(s) 158
AjnI CCWGG 1 cut(s) 239
AjuI GAANNNNNNNTTGG 2 cut(s) 683, 715
AloI GAACNNNNNNTCC 2 cut(s) 148, 180
AluBI AGCT 4 cut(s) 357, 391, 507, 686
AluI AGCT 4 cut(s) 357, 391, 507, 686
Alw21I GWGCWC 1 cut(s) 57
AlwI GGATC 1 cut(s) 459
AlwNI CAGNNNCTG 1 cut(s) 598
ApeKI GCWGC 1 cut(s) 662
AspLEI GCGC 2 cut(s) 300, 552
AsuC2I CCSGG 2 cut(s) 317, 719
AsuHPI GGTGA 1 cut(s) 554
AsuNHI GCTAGC 1 cut(s) 650
BarI GAAGNNNNNNTAC 2 cut(s) 362, 394
BbsI GAAGAC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 649
BccI CCATC 2 cut(s) 457, 479
BciT130I CCWGG 1 cut(s) 241
BcnI CCSGG 2 cut(s) 317, 719
BcuI ACTAGT 1 cut(s) 158
BfaI CTAG 4 cut(s) 159, 360, 651, 739
BfoI RGCGCY 1 cut(s) 553
BfrI CTTAAG 2 cut(s) 95, 470
BglII AGATCT 2 cut(s) 205, 490
BisI GCNGC 1 cut(s) 663
BlpI GCTNAGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 664
Bme1390I CCNGG 3 cut(s) 241, 317, 719
BmrFI CCNGG 3 cut(s) 241, 317, 719
BmrI ACTGGG 1 cut(s) 54
BmsI GCATC 2 cut(s) 285, 412
BmtI GCTAGC 1 cut(s) 654
BmuI ACTGGG 1 cut(s) 54
BpiI GAAGAC 1 cut(s) 155
BplI GAGNNNNNCTC 2 cut(s) 284, 316
BpmI CTGGAG 2 cut(s) 523, 620
Bpu1102I GCTNAGC 1 cut(s) 387
BpuMI CCSGG 2 cut(s) 317, 719
BsaBI GATNNNNATC 1 cut(s) 489
BsaWI WCCGGW 2 cut(s) 289, 511
Bse1I ACTGG 5 cut(s) 49, 95, 506, 603, 681
Bse8I GATNNNNATC 1 cut(s) 489
BseBI CCWGG 1 cut(s) 241
BseGI GGATG 5 cut(s) 199, 310, 427, 490, 622
BseJI GATNNNNATC 1 cut(s) 489
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 5 cut(s) 49, 95, 506, 603, 681
BseXI GCAGC 1 cut(s) 649
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 4 cut(s) 290, 317, 512, 719
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 4 cut(s) 205, 268, 451, 490
Bsp1720I GCTNAGC 1 cut(s) 387
BspCNI CTCAG 1 cut(s) 181
BspOI GCTAGC 1 cut(s) 654
BspPI GGATC 1 cut(s) 459
BspTI CTTAAG 2 cut(s) 95, 470
BsrI ACTGG 5 cut(s) 49, 95, 506, 603, 681
BssMI GATC 4 cut(s) 205, 268, 451, 490
Bst2UI CCWGG 1 cut(s) 241
Bst4CI ACNGT 3 cut(s) 247, 594, 734
Bst6I CTCTTC 1 cut(s) 215
BstAFI CTTAAG 2 cut(s) 95, 470
BstAPI GCANNNNNTGC 1 cut(s) 142
BstC8I GCNNGC 2 cut(s) 393, 652
BstDEI CTNAG 2 cut(s) 189, 387
BstF5I GGATG 5 cut(s) 199, 310, 427, 490, 622
BstH2I RGCGCY 1 cut(s) 553
BstHHI GCGC 2 cut(s) 300, 552
BstKTI GATC 4 cut(s) 208, 271, 454, 493
BstMBI GATC 4 cut(s) 205, 268, 451, 490
BstMWI GCNNNNNNNGC 4 cut(s) 124, 133, 142, 392
BstNI CCWGG 1 cut(s) 241
BstNSI RCATGY 1 cut(s) 586
BstSCI CCNGG 3 cut(s) 239, 315, 717
BstV1I GCAGC 1 cut(s) 649
BstV2I GAAGAC 1 cut(s) 155
BstX2I RGATCY 2 cut(s) 205, 490
BstYI RGATCY 2 cut(s) 205, 490
BtsCI GGATG 5 cut(s) 199, 310, 427, 490, 622
BtsIMutI CAGTG 2 cut(s) 252, 499
Cac8I GCNNGC 2 cut(s) 393, 652
CaiI CAGNNNCTG 1 cut(s) 598
CfoI GCGC 2 cut(s) 300, 552
Csp6I GTAC 2 cut(s) 284, 475
CviAII CATG 4 cut(s) 11, 153, 231, 583
CviJI RGCY 8 cut(s) 94, 118, 357, 391, 507, 654, 662, 686
CviKI_1 RGCY 8 cut(s) 94, 118, 357, 391, 507, 654, 662, 686
CviQI GTAC 2 cut(s) 284, 475
DdeI CTNAG 2 cut(s) 189, 387
DpnI GATC 4 cut(s) 207, 270, 453, 492
DpnII GATC 4 cut(s) 205, 268, 451, 490
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 239
FaeI CATG 4 cut(s) 14, 156, 234, 586
FatI CATG 4 cut(s) 10, 152, 230, 582
Fnu4HI GCNGC 1 cut(s) 663
FokI GGATG 5 cut(s) 206, 317, 434, 497, 629
Fsp4HI GCNGC 1 cut(s) 663
FspBI CTAG 4 cut(s) 159, 360, 651, 739
GlaI GCGC 2 cut(s) 299, 551
GluI GCNGC 1 cut(s) 663
GsuI CTGGAG 2 cut(s) 523, 620
HaeII RGCGCY 1 cut(s) 553
HapII CCGG 4 cut(s) 290, 317, 512, 719
HhaI GCGC 2 cut(s) 300, 552
Hin1II CATG 4 cut(s) 14, 156, 234, 586
Hin6I GCGC 2 cut(s) 298, 550
HinP1I GCGC 2 cut(s) 298, 550
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 2 cut(s) 7, 101
HpaII CCGG 4 cut(s) 290, 317, 512, 719
HphI GGTGA 1 cut(s) 554
Hpy188I TCNGA 2 cut(s) 304, 690
Hpy188III TCNNGA 1 cut(s) 728
HpyCH4III ACNGT 3 cut(s) 247, 594, 734
HpyCH4V TGCA 4 cut(s) 63, 230, 425, 665
HpyF10VI GCNNNNNNNGC 4 cut(s) 124, 133, 142, 392
HpyF3I CTNAG 2 cut(s) 189, 387
Hsp92II CATG 4 cut(s) 14, 156, 234, 586
HspAI GCGC 2 cut(s) 298, 550
Kzo9I GATC 4 cut(s) 205, 268, 451, 490
LmnI GCTCC 2 cut(s) 133, 504
Lsp1109I GCAGC 1 cut(s) 649
LweI GCATC 2 cut(s) 285, 412
MaeI CTAG 4 cut(s) 159, 360, 651, 739
MaeIII GTNAC 4 cut(s) 432, 497, 594, 672
MalI GATC 4 cut(s) 207, 270, 453, 492
MboI GATC 4 cut(s) 205, 268, 451, 490
MboII GAAGA 2 cut(s) 160, 202
MfeI CAATTG 1 cut(s) 168
MflI RGATCY 2 cut(s) 205, 490
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 3 cut(s) 168, 258, 562
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 6 cut(s) 108, 184, 301, 436, 475, 701
MseI TTAA 3 cut(s) 96, 471, 528
MspCI CTTAAG 2 cut(s) 95, 470
MspI CCGG 4 cut(s) 290, 317, 512, 719
MspR9I CCNGG 3 cut(s) 241, 317, 719
MunI CAATTG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 241
MwoI GCNNNNNNNGC 4 cut(s) 124, 133, 142, 392
NciI CCSGG 2 cut(s) 317, 719
NdeII GATC 4 cut(s) 205, 268, 451, 490
NheI GCTAGC 1 cut(s) 650
NlaIII CATG 4 cut(s) 14, 156, 234, 586
NmuCI GTSAC 1 cut(s) 497
NspI RCATGY 1 cut(s) 586
PciI ACATGT 1 cut(s) 582
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 1 cut(s) 664
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PscI ACATGT 1 cut(s) 582
Psp6I CCWGG 1 cut(s) 239
PspGI CCWGG 1 cut(s) 239
PstNI CAGNNNCTG 1 cut(s) 598
PsuI RGATCY 2 cut(s) 205, 490
RsaI GTAC 2 cut(s) 285, 476
RsaNI GTAC 2 cut(s) 284, 475
SaqAI TTAA 3 cut(s) 96, 471, 528
SatI GCNGC 1 cut(s) 663
Sau3AI GATC 4 cut(s) 205, 268, 451, 490
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 3 cut(s) 241, 317, 719
SduI GDGCHC 1 cut(s) 57
SetI ASST 5 cut(s) 359, 393, 509, 688, 701
SfaNI GCATC 2 cut(s) 285, 412
SmlI CTYRAG 2 cut(s) 95, 470
SmoI CTYRAG 2 cut(s) 95, 470
SpeI ACTAGT 1 cut(s) 158
Sse9I AATT 3 cut(s) 168, 258, 562
SspI AATATT 1 cut(s) 532
SspMI CTAG 4 cut(s) 159, 360, 651, 739
StyD4I CCNGG 3 cut(s) 239, 315, 717
TaaI ACNGT 3 cut(s) 247, 594, 734
TaqI TCGA 3 cut(s) 267, 274, 334
TasI AATT 3 cut(s) 168, 258, 562
TatI WGTACW 2 cut(s) 283, 474
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 3 cut(s) 96, 471, 528
Tru9I TTAA 3 cut(s) 96, 471, 528
TscAI CASTG 2 cut(s) 252, 506
TseFI GTSAC 1 cut(s) 497
TseI GCWGC 1 cut(s) 662
Tsp45I GTSAC 1 cut(s) 497
TspDTI ATGAA 2 cut(s) 89, 603
TspGWI ACGGA 1 cut(s) 485
TspRI CASTG 2 cut(s) 252, 506
Vha464I CTTAAG 2 cut(s) 95, 470
XceI RCATGY 1 cut(s) 586
XspI CTAG 4 cut(s) 159, 360, 651, 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.