Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009463.1

Orthogroup ID

OG0003644

Physical Location & Seq

Genomic Coordinates Forward (+)

73535 .. 77681

Gene Structure 4147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009463.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atgcgctcggatgaggattgcccggacaatctcacatttcgagtgaatactgaaaagagtagctctagtgctgtgtatgattacttctctgctaagcttgctgatgttgaatgtcgtaatggaatggatgcaagtttgttacaagttgaggacagggatcgtgtggagatggtgcttaagtacattgaggatggagatctccgtcactggagcttaccggatattagggcgtttaatattggacttggtgaatggcgctcaaagttgaattgctttactaatccatacatgtatgaacagttactggagataagtgctgtggatgttgtcgctatggggaagtcttatatttctgctagccaaaaggctgcaaataagttactggataaagctctgaaaataaggttgggcagaggattttacccggagtgtctgggagtgagagctgatgggaattccgagttaagcgatgaaattggcaagcagcttagtgtgaaaagtgccgctgctggtcttagtagcgaggtcaaaaatcctctttgcctgcccaactccgagcctgatgccctgtccacatactcgatttctgatgtcagggttgtttttctagtagttctgtcaggaattgttattcaatgctattgggccatacatggactggaagaaggttgctttgggaatggtcccattgtaccctccaagaagaacctcttcagtgcacttacttcccaagggttcaaaatatctcgccagtctgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

253

Amino Acids

27.93

Weight (kDa)

5.23

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09580 AT5G09580
fragaria_vesca	FvH4_1g23320 FvH4_1g23320
malus_domestica	MD10G1056400.v1.1
prunus_persica	Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1
pyrus_communis	pycom10g04330 pycom10g04340
rosa_chinensis	RchiOBHm_Chr2g0118131 RchiOBHm_Chr2g0118141 RchiOBHm_Chr2g0118161
rosa_laevigata	RLG00000018394 RLG00000018395 RLG00000018401
rosa_multiflora	Rmu_sc0001618.1_g000003 Rmu_sc0001618.1_g000008 Rmu_sc0001618.1_g000012 Rmu_sc0009463.1_g000001 Rmu_sc0009463.1_g000017
rosa_roxburghii	Rroxscaffold_2G00125850 Rroxscaffold_2G00125900 Rroxscaffold_3G00234990 Rroxscaffold_4G00309060
rosa_rugosa	Rorug02G0216300 Rorug02G0217100
rosa_samantha	Rh2AG273200 Rh2BG285500 Rh2CG410200 Rh6DG346000 Rh7BG104700
rosa_wichuraiana	Rw2G021570 Rw2G021590 Rw2G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	504
AclWI	GGATC	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	454
AcuI	CTGAAG	1 cut(s)	697
AfaI	GTAC	2 cut(s)	182, 693
AflII	CTTAAG	1 cut(s)	176
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	4 cut(s)	110, 268, 635, 739
AjuI	GAANNNNNNNTTGG	4 cut(s)	389, 421, 657, 689
AluBI	AGCT	6 cut(s)	63, 97, 213, 392, 446, 487
AluI	AGCT	6 cut(s)	63, 97, 213, 392, 446, 487
Alw21I	GWGCWC	1 cut(s)	721
Alw44I	GTGCAC	1 cut(s)	717
AlwI	GGATC	1 cut(s)	165
AlwNI	CAGNNNCTG	1 cut(s)	304
AoxI	GGCC	1 cut(s)	645
ApaLI	GTGCAC	1 cut(s)	717
ApeKI	GCWGC	3 cut(s)	368, 484, 506
ApoI	RAATTY	1 cut(s)	454
Asp700I	GAANNNNTTC	1 cut(s)	710
AspLEI	GCGC	2 cut(s)	6, 258
AspS9I	GGNCC	2 cut(s)	645, 683
AsuC2I	CCSGG	2 cut(s)	23, 425
AsuHPI	GGTGA	1 cut(s)	260
AsuNHI	GCTAGC	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	683
BaeGI	GKGCMC	1 cut(s)	721
BarI	GAAGNNNNNNTAC	2 cut(s)	68, 100
Bbv12I	GWGCWC	1 cut(s)	721
BbvI	GCAGC	3 cut(s)	355, 493, 496
BccI	CCATC	3 cut(s)	163, 185, 443
BcgI	CGANNNNNNTGC	2 cut(s)	545, 579
BcnI	CCSGG	2 cut(s)	23, 425
BfaI	CTAG	4 cut(s)	66, 357, 608, 760
BfoI	RGCGCY	1 cut(s)	259
BfrI	CTTAAG	1 cut(s)	176
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	4 cut(s)	369, 485, 504, 507
BlpI	GCTNAGC	1 cut(s)	93
BlsI	GCNGC	4 cut(s)	370, 486, 505, 508
Bme1390I	CCNGG	2 cut(s)	23, 425
Bme18I	GGWCC	1 cut(s)	683
BmgT120I	GGNCC	2 cut(s)	645, 683
BmiI	GGNNCC	1 cut(s)	685
BmrFI	CCNGG	2 cut(s)	23, 425
BmsI	GCATC	2 cut(s)	118, 553
BmtI	GCTAGC	1 cut(s)	360
BpmI	CTGGAG	2 cut(s)	229, 326
Bpu1102I	GCTNAGC	1 cut(s)	93
BpuMI	CCSGG	2 cut(s)	23, 425
BsaBI	GATNNNNATC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	730
BsaWI	WCCGGW	1 cut(s)	217
Bse1I	ACTGG	5 cut(s)	212, 309, 387, 663, 751
Bse8I	GATNNNNATC	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	730
BseGI	GGATG	4 cut(s)	16, 133, 196, 328
BseJI	GATNNNNATC	1 cut(s)	195
BseNI	ACTGG	5 cut(s)	212, 309, 387, 663, 751
BseSI	GKGCMC	1 cut(s)	721
BseXI	GCAGC	3 cut(s)	355, 493, 496
BshFI	GGCC	1 cut(s)	647
BsiHKAI	GWGCWC	1 cut(s)	721
BsiSI	CCGG	3 cut(s)	23, 218, 425
BslFI	GGGAC	1 cut(s)	669
BsmFI	GGGAC	1 cut(s)	669
BsnI	GGCC	1 cut(s)	647
Bsp1286I	GDGCHC	1 cut(s)	721
Bsp143I	GATC	2 cut(s)	157, 196
Bsp1720I	GCTNAGC	1 cut(s)	93
BspACI	CCGC	1 cut(s)	504
BspANI	GGCC	1 cut(s)	647
BspLI	GGNNCC	1 cut(s)	685
BspOI	GCTAGC	1 cut(s)	360
BspPI	GGATC	1 cut(s)	165
BspTI	CTTAAG	1 cut(s)	176
BsrI	ACTGG	5 cut(s)	212, 309, 387, 663, 751
BssECI	CCNNGG	1 cut(s)	730
BssMI	GATC	2 cut(s)	157, 196
BssT1I	CCWWGG	1 cut(s)	730
Bst4CI	ACNGT	1 cut(s)	300
Bst6I	CTCTTC	1 cut(s)	716
BstAFI	CTTAAG	1 cut(s)	176
BstC8I	GCNNGC	4 cut(s)	99, 358, 482, 545
BstDEI	CTNAG	3 cut(s)	93, 488, 515
BstF5I	GGATG	4 cut(s)	16, 133, 196, 328
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	2 cut(s)	6, 258
BstKTI	GATC	2 cut(s)	160, 199
BstMBI	GATC	2 cut(s)	157, 196
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	2 cut(s)	21, 423
BstSLI	GKGCMC	1 cut(s)	721
BstV1I	GCAGC	3 cut(s)	355, 493, 496
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	647
BtgZI	GCGATG	1 cut(s)	483
BtsCI	GGATG	4 cut(s)	16, 133, 196, 328
BtsIMutI	CAGTG	2 cut(s)	205, 721
Cac8I	GCNNGC	4 cut(s)	99, 358, 482, 545
CaiI	CAGNNNCTG	1 cut(s)	304
CfoI	GCGC	2 cut(s)	6, 258
Cfr13I	GGNCC	2 cut(s)	645, 683
Csp6I	GTAC	2 cut(s)	181, 692
CviAII	CATG	2 cut(s)	289, 653
CviQI	GTAC	2 cut(s)	181, 692
DdeI	CTNAG	3 cut(s)	93, 488, 515
DpnI	GATC	2 cut(s)	159, 198
DpnII	GATC	2 cut(s)	157, 196
Eam1104I	CTCTTC	1 cut(s)	716
EarI	CTCTTC	1 cut(s)	716
Eco130I	CCWWGG	1 cut(s)	730
Eco47I	GGWCC	1 cut(s)	683
Eco57I	CTGAAG	1 cut(s)	697
EcoRI	GAATTC	1 cut(s)	454
EcoT14I	CCWWGG	1 cut(s)	730
ErhI	CCWWGG	1 cut(s)	730
FaeI	CATG	2 cut(s)	292, 656
FaiI	YATR	9 cut(s)	78, 286, 290, 294, 335, 348, 577, 650, 654
FalI	AAGNNNNNCTT	2 cut(s)	695, 727
FaqI	GGGAC	1 cut(s)	669
FatI	CATG	2 cut(s)	288, 652
Fnu4HI	GCNGC	4 cut(s)	369, 485, 504, 507
FokI	GGATG	4 cut(s)	23, 140, 203, 335
Fsp4HI	GCNGC	4 cut(s)	369, 485, 504, 507
FspBI	CTAG	4 cut(s)	66, 357, 608, 760
GlaI	GCGC	2 cut(s)	5, 257
GluI	GCNGC	4 cut(s)	369, 485, 504, 507
GsuI	CTGGAG	2 cut(s)	229, 326
HaeII	RGCGCY	1 cut(s)	259
HaeIII	GGCC	1 cut(s)	647
HapII	CCGG	3 cut(s)	23, 218, 425
HhaI	GCGC	2 cut(s)	6, 258
Hin1II	CATG	2 cut(s)	292, 656
Hin6I	GCGC	2 cut(s)	4, 256
HinP1I	GCGC	2 cut(s)	4, 256
HindIII	AAGCTT	1 cut(s)	95
HpaII	CCGG	3 cut(s)	23, 218, 425
HphI	GGTGA	1 cut(s)	260
Hpy166II	GTNNAC	2 cut(s)	573, 719
Hpy188I	TCNGA	5 cut(s)	10, 396, 460, 556, 589
Hpy188III	TCNNGA	1 cut(s)	621
Hpy8I	GTNNAC	2 cut(s)	573, 719
HpyAV	CCTTC	1 cut(s)	659
HpyCH4III	ACNGT	1 cut(s)	300
HpyCH4V	TGCA	3 cut(s)	131, 371, 719
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	3 cut(s)	93, 488, 515
Hsp92II	CATG	2 cut(s)	292, 656
HspAI	GCGC	2 cut(s)	4, 256
Kzo9I	GATC	2 cut(s)	157, 196
LmnI	GCTCC	1 cut(s)	210
Lsp1109I	GCAGC	3 cut(s)	355, 493, 496
LweI	GCATC	2 cut(s)	118, 553
MaeI	CTAG	4 cut(s)	66, 357, 608, 760
MaeIII	GTNAC	4 cut(s)	138, 203, 300, 378
MalI	GATC	2 cut(s)	159, 198
MboI	GATC	2 cut(s)	157, 196
MboII	GAAGA	3 cut(s)	674, 703, 715
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	721
MluCI	AATT	4 cut(s)	268, 454, 474, 624
MnlI	CCTC	8 cut(s)	7, 142, 181, 407, 517, 546, 706, 719
MroXI	GAANNNNTTC	1 cut(s)	710
MseI	TTAA	3 cut(s)	177, 234, 464
MspA1I	CMGCKG	1 cut(s)	506
MspCI	CTTAAG	1 cut(s)	176
MspI	CCGG	3 cut(s)	23, 218, 425
MspR9I	CCNGG	2 cut(s)	23, 425
MwoI	GCNNNNNNNGC	1 cut(s)	98
NciI	CCSGG	2 cut(s)	23, 425
NdeII	GATC	2 cut(s)	157, 196
NheI	GCTAGC	1 cut(s)	356
NlaIII	CATG	2 cut(s)	292, 656
NlaIV	GGNNCC	1 cut(s)	685
NmuCI	GTSAC	1 cut(s)	203
NspI	RCATGY	1 cut(s)	292
PciI	ACATGT	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	710
PkrI	GCNGC	4 cut(s)	370, 486, 505, 508
PscI	ACATGT	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	685
PspPI	GGNCC	2 cut(s)	645, 683
PstNI	CAGNNNCTG	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	196
RsaI	GTAC	2 cut(s)	182, 693
RsaNI	GTAC	2 cut(s)	181, 692
SaqAI	TTAA	3 cut(s)	177, 234, 464
SatI	GCNGC	4 cut(s)	369, 485, 504, 507
Sau3AI	GATC	2 cut(s)	157, 196
Sau96I	GGNCC	2 cut(s)	645, 683
ScrFI	CCNGG	2 cut(s)	23, 425
SduI	GDGCHC	1 cut(s)	721
SfaNI	GCATC	2 cut(s)	118, 553
SinI	GGWCC	1 cut(s)	683
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	4 cut(s)	268, 454, 474, 624
SsiI	CCGC	1 cut(s)	504
SspI	AATATT	1 cut(s)	238
SspMI	CTAG	4 cut(s)	66, 357, 608, 760
StyD4I	CCNGG	2 cut(s)	21, 423
StyI	CCWWGG	1 cut(s)	730
TaaI	ACNGT	1 cut(s)	300
TaqI	TCGA	2 cut(s)	40, 581
TasI	AATT	4 cut(s)	268, 454, 474, 624
TatI	WGTACW	1 cut(s)	180
TauI	GCSGC	1 cut(s)	506
Tru1I	TTAA	3 cut(s)	177, 234, 464
Tru9I	TTAA	3 cut(s)	177, 234, 464
TscAI	CASTG	2 cut(s)	212, 721
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	3 cut(s)	368, 484, 506
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	2 cut(s)	309, 486
TspGWI	ACGGA	1 cut(s)	191
TspRI	CASTG	2 cut(s)	212, 721
Vha464I	CTTAAG	1 cut(s)	176
VneI	GTGCAC	1 cut(s)	717
VpaK11BI	GGWCC	1 cut(s)	683
XapI	RAATTY	1 cut(s)	454
XceI	RCATGY	1 cut(s)	292
XcmI	CCANNNNNNNNNTGG	1 cut(s)	655
XmnI	GAANNNNTTC	1 cut(s)	710
XspI	CTAG	4 cut(s)	66, 357, 608, 760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.