Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003644

Physical Location & Seq

Genomic Coordinates Forward (+)

60948634 .. 60955323

Gene Structure 6690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00125900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGCCCTTTCAACTCATTCTTATTTACTTTGCTTTGACAGGGTCGATTATTTGTGTACTCGAGGACCGGAGAGGTGCTACTTCCTTGATTTTCTTGGCCCCAAAGGATTTGCGGTCGAGTTTGCAAGGAGAGCTTCGTGCGAGAGAACCATACTTGTGTCATCTTCAGCAGCAGCAGCAGCAGCAGCAGCAATGGCTCCGATCAGACGCCGCCTTAGATGCTCTATCCAAAGCCTCCGACGAAAAAGTCCCCAACTTACTTCTCTACAACTACCCTTCTTTCTCCGGCGCCTTCTCCGCTCTCTTCGCTCACCTCTACCACTCTCGCCTCAACCTCCCTCTCCTCTCTCTCCCGTTCTCCGCCGTCGAACCCTTCAGGGTCGATGATTTGTGTACTCGAGGACTGGAGAGGTGCTATTTCCTTGATTTTCTTGGCCCCAGAGGATTTGCGGTCGAGTTTGCAAGGAGAGCTTCGTGCGAGGTGATTGCTTTCGATCATCGGAAATCTGTACTTTCCGAGGTACCTTCCGAAGAGGATTGCCTGGACAATCTCACATTTCGATTGAATACTGAAAAGAGTAGCGCTTTTGCTGTGTATGATTACTTCTCTGCTAAGCTTGCCGATATTGAATTTCGTAATGGAATGGATGCAACTTTGTTAGAAGTTGAGGAGAGGGATCGTGTGGAGTTGGTGCTTAAGTACATTGAGGATGGAGATCTCCGTCGCTGGAGCTTACCGGATATTAGGGCGTTTAATATTGGACTTGGTGAATGGTGCTCGAAGTTGAATTGCTTTACTAATCCATACATGTATGAACAGTTACTGGAGATAAGTGCTACGGATGTTATTGCTAAGGGAAAGTCGTATATTTCTGCTCGCCAAAAGGCTGCAAATAAGTTACTGGATAAACCTCTGAAAATAAGGTTGGGCAGAGGATTTTACGGGGAGTGTCTGGGAATGAGAGCTGATGGGAATTCTGAGTTAAGTGATGAAATTGGCAAGCAACTTAGTGTAAAAAGTGCCGCTGCTGGTCTAAGGCCTATAGGAGCTGTTATATTCATGCAACGGAGAAACCTCAAAATGTGCTTAAGGAGTACTGATACTGCGACTGATACCTCTGAAGTTGCAAAGGCATATGGAGGAGGGGGCACCCCAAGTTCGAGTTCCTTTAATATAAGGATGGATGAGTACAATCAGTGGGTTTCAGGAAACTCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

406

Amino Acids

45.72

Weight (kDa)

6.19

Isoelectric Point (pI)

53.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09580 AT5G09580
fragaria_vesca	FvH4_1g23320 FvH4_1g23320
malus_domestica	MD10G1056400.v1.1
prunus_persica	Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1
pyrus_communis	pycom10g04330 pycom10g04340
rosa_chinensis	RchiOBHm_Chr2g0118131 RchiOBHm_Chr2g0118141 RchiOBHm_Chr2g0118161
rosa_laevigata	RLG00000018394 RLG00000018395 RLG00000018401
rosa_multiflora	Rmu_sc0001618.1_g000003 Rmu_sc0001618.1_g000008 Rmu_sc0001618.1_g000012 Rmu_sc0009463.1_g000001 Rmu_sc0009463.1_g000017
rosa_roxburghii	Rroxscaffold_2G00125850 Rroxscaffold_2G00125900 Rroxscaffold_3G00234990 Rroxscaffold_4G00309060
rosa_rugosa	Rorug02G0216300 Rorug02G0217100
rosa_samantha	Rh2AG273200 Rh2BG285500 Rh2CG410200 Rh6DG346000 Rh7BG104700
rosa_wichuraiana	Rw2G021570 Rw2G021590 Rw2G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	245
Acc65I	GGTACC	1 cut(s)	520
AccB1I	GGYRCC	3 cut(s)	287, 520, 1148
AccBSI	CCGCTC	1 cut(s)	299
AciI	CCGC	6 cut(s)	112, 210, 297, 360, 449, 1023
AclWI	GGATC	1 cut(s)	684
AcsI	RAATTY	2 cut(s)	629, 973
AcuI	CTGAAG	3 cut(s)	149, 358, 1140
AcyI	GRCGYC	2 cut(s)	207, 288
AfaI	GTAC	7 cut(s)	57, 394, 510, 522, 701, 1096, 1190
AfeI	AGCGCT	1 cut(s)	583
AflII	CTTAAG	2 cut(s)	695, 1087
AflIII	ACRYGT	1 cut(s)	807
AgsI	TTSAA	4 cut(s)	11, 565, 629, 787
AjnI	CCWGG	1 cut(s)	540
AjuI	GAANNNNNNNTTGG	4 cut(s)	908, 940, 1147, 1179
AluBI	AGCT	6 cut(s)	133, 470, 616, 732, 965, 1049
AluI	AGCT	6 cut(s)	133, 470, 616, 732, 965, 1049
Alw21I	GWGCWC	1 cut(s)	779
AlwI	GGATC	1 cut(s)	684
AlwNI	CAGNNNCTG	1 cut(s)	823
Ama87I	CYCGRG	2 cut(s)	59, 396
Aor51HI	AGCGCT	1 cut(s)	583
AoxI	GGCC	3 cut(s)	96, 433, 1037
ApeKI	GCWGC	9 cut(s)	169, 172, 175, 178, 181, 184, 187, 887, 1025
ApoI	RAATTY	2 cut(s)	629, 973
Asp718I	GGTACC	1 cut(s)	520
AspLEI	GCGC	2 cut(s)	290, 584
AspS9I	GGNCC	3 cut(s)	64, 97, 434
AsuHPI	GGTGA	3 cut(s)	302, 493, 779
AvaI	CYCGRG	2 cut(s)	59, 396
AvaII	GGWCC	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	1151
BanI	GGYRCC	3 cut(s)	287, 520, 1148
BarI	GAAGNNNNNNTAC	2 cut(s)	587, 619
Bbv12I	GWGCWC	1 cut(s)	779
BbvI	GCAGC	9 cut(s)	181, 184, 187, 190, 193, 196, 199, 874, 1012
BccI	CCATC	3 cut(s)	704, 962, 1174
BceAI	ACGGC	1 cut(s)	347
BcgI	CGANNNNNNTGC	2 cut(s)	467, 501
BciT130I	CCWGG	1 cut(s)	542
BfmI	CTRYAG	1 cut(s)	1041
BfoI	RGCGCY	2 cut(s)	291, 585
BfrI	CTTAAG	2 cut(s)	695, 1087
BglII	AGATCT	1 cut(s)	715
BlpI	GCTNAGC	1 cut(s)	612
BmcAI	AGTACT	1 cut(s)	1096
Bme1390I	CCNGG	1 cut(s)	542
Bme18I	GGWCC	1 cut(s)	64
BmeT110I	CYCGRG	2 cut(s)	59, 396
BmgT120I	GGNCC	3 cut(s)	64, 97, 434
BmiI	GGNNCC	6 cut(s)	99, 197, 289, 436, 522, 1150
BmrFI	CCNGG	1 cut(s)	542
BmsI	GCATC	2 cut(s)	208, 637
BpmI	CTGGAG	3 cut(s)	425, 748, 845
Bpu10I	CCTNAGC	1 cut(s)	852
Bpu1102I	GCTNAGC	1 cut(s)	612
BpuEI	CTTGAG	1 cut(s)	1198
BsaBI	GATNNNNATC	1 cut(s)	714
BsaHI	GRCGYC	2 cut(s)	207, 288
BsaJI	CCNNGG	1 cut(s)	516
BsaWI	WCCGGW	2 cut(s)	66, 736
Bse1I	ACTGG	3 cut(s)	408, 828, 906
Bse3DI	GCAATG	1 cut(s)	197
Bse8I	GATNNNNATC	1 cut(s)	714
BseBI	CCWGG	1 cut(s)	542
BseDI	CCNNGG	1 cut(s)	516
BseGI	GGATG	5 cut(s)	652, 715, 847, 1185, 1189
BseJI	GATNNNNATC	1 cut(s)	714
BseMI	GCAATG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	969
BseNI	ACTGG	3 cut(s)	408, 828, 906
BseRI	GAGGAG	3 cut(s)	332, 683, 1155
BseSI	GKGCMC	1 cut(s)	1151
BseXI	GCAGC	9 cut(s)	181, 184, 187, 190, 193, 196, 199, 874, 1012
Bsh1285I	CGRYCG	2 cut(s)	116, 453
BshFI	GGCC	3 cut(s)	98, 435, 1039
BshNI	GGYRCC	3 cut(s)	287, 520, 1148
BsiEI	CGRYCG	2 cut(s)	116, 453
BsiHKAI	GWGCWC	1 cut(s)	779
BsiHKCI	CYCGRG	2 cut(s)	59, 396
BsiSI	CCGG	3 cut(s)	67, 285, 737
BslFI	GGGAC	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	3 cut(s)	98, 435, 1039
BsoBI	CYCGRG	2 cut(s)	59, 396
Bsp1286I	GDGCHC	2 cut(s)	779, 1151
Bsp143I	GATC	4 cut(s)	200, 493, 676, 715
Bsp1720I	GCTNAGC	1 cut(s)	612
BspACI	CCGC	6 cut(s)	112, 210, 297, 360, 449, 1023
BspANI	GGCC	3 cut(s)	98, 435, 1039
BspCNI	CTCAG	1 cut(s)	970
BspLI	GGNNCC	6 cut(s)	99, 197, 289, 436, 522, 1150
BspPI	GGATC	1 cut(s)	684
BspT107I	GGYRCC	3 cut(s)	287, 520, 1148
BspTI	CTTAAG	2 cut(s)	695, 1087
BsrBI	CCGCTC	1 cut(s)	299
BsrDI	GCAATG	1 cut(s)	197
BsrI	ACTGG	3 cut(s)	408, 828, 906
BssECI	CCNNGG	1 cut(s)	516
BssMI	GATC	4 cut(s)	200, 493, 676, 715
BssNI	GRCGYC	2 cut(s)	207, 288
Bst2UI	CCWGG	1 cut(s)	542
Bst4CI	ACNGT	1 cut(s)	819
Bst6I	CTCTTC	2 cut(s)	308, 525
BstACI	GRCGYC	2 cut(s)	207, 288
BstAFI	CTTAAG	2 cut(s)	695, 1087
BstC8I	GCNNGC	3 cut(s)	618, 877, 1001
BstDEI	CTNAG	6 cut(s)	214, 612, 852, 978, 1007, 1034
BstF5I	GGATG	5 cut(s)	652, 715, 847, 1185, 1189
BstH2I	RGCGCY	2 cut(s)	291, 585
BstHHI	GCGC	2 cut(s)	290, 584
BstKTI	GATC	4 cut(s)	203, 496, 679, 718
BstMBI	GATC	4 cut(s)	200, 493, 676, 715
BstMCI	CGRYCG	2 cut(s)	116, 453
BstNI	CCWGG	1 cut(s)	542
BstNSI	RCATGY	1 cut(s)	811
BstSCI	CCNGG	1 cut(s)	540
BstSFI	CTRYAG	1 cut(s)	1041
BstSLI	GKGCMC	1 cut(s)	1151
BstV1I	GCAGC	9 cut(s)	181, 184, 187, 190, 193, 196, 199, 874, 1012
BstX2I	RGATCY	1 cut(s)	715
BstYI	RGATCY	1 cut(s)	715
BsuRI	GGCC	3 cut(s)	98, 435, 1039
BtsCI	GGATG	5 cut(s)	652, 715, 847, 1185, 1189
BtsIMutI	CAGTG	1 cut(s)	1202
Cac8I	GCNNGC	3 cut(s)	618, 877, 1001
CaiI	CAGNNNCTG	1 cut(s)	823
CfoI	GCGC	2 cut(s)	290, 584
Cfr13I	GGNCC	3 cut(s)	64, 97, 434
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	7 cut(s)	56, 393, 509, 521, 700, 1095, 1189
CviAII	CATG	2 cut(s)	808, 1060
CviQI	GTAC	7 cut(s)	56, 393, 509, 521, 700, 1095, 1189
DdeI	CTNAG	6 cut(s)	214, 612, 852, 978, 1007, 1034
DinI	GGCGCC	1 cut(s)	289
DpnI	GATC	4 cut(s)	202, 495, 678, 717
DpnII	GATC	4 cut(s)	200, 493, 676, 715
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
Eam1104I	CTCTTC	2 cut(s)	308, 525
EarI	CTCTTC	2 cut(s)	308, 525
EciI	GGCGGA	1 cut(s)	349
Eco147I	AGGCCT	1 cut(s)	1039
Eco47I	GGWCC	1 cut(s)	64
Eco47III	AGCGCT	1 cut(s)	583
Eco57I	CTGAAG	3 cut(s)	149, 358, 1140
Eco88I	CYCGRG	2 cut(s)	59, 396
EcoRI	GAATTC	1 cut(s)	973
EcoRII	CCWGG	1 cut(s)	540
EgeI	GGCGCC	1 cut(s)	289
EheI	GGCGCC	1 cut(s)	289
FaeI	CATG	2 cut(s)	811, 1063
FalI	AAGNNNNNCTT	4 cut(s)	117, 149, 454, 486
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	2 cut(s)	807, 1059
FauNDI	CATATG	1 cut(s)	1135
FokI	GGATG	5 cut(s)	659, 722, 854, 1192, 1196
GlaI	GCGC	2 cut(s)	289, 583
GsuI	CTGGAG	3 cut(s)	425, 748, 845
HaeII	RGCGCY	2 cut(s)	291, 585
HaeIII	GGCC	3 cut(s)	98, 435, 1039
HapII	CCGG	3 cut(s)	67, 285, 737
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	2 cut(s)	290, 584
Hin1I	GRCGYC	2 cut(s)	207, 288
Hin1II	CATG	2 cut(s)	811, 1063
Hin6I	GCGC	2 cut(s)	288, 582
HinP1I	GCGC	2 cut(s)	288, 582
HindIII	AAGCTT	1 cut(s)	614
HpaII	CCGG	3 cut(s)	67, 285, 737
HphI	GGTGA	3 cut(s)	302, 493, 779
Hpy166II	GTNNAC	2 cut(s)	56, 393
Hpy188I	TCNGA	9 cut(s)	200, 205, 238, 501, 517, 529, 915, 979, 1120
Hpy188III	TCNNGA	2 cut(s)	1206, 1215
Hpy8I	GTNNAC	2 cut(s)	56, 393
Hpy99I	CGWCG	3 cut(s)	242, 368, 726
HpyAV	CCTTC	4 cut(s)	285, 301, 382, 534
HpyCH4III	ACNGT	1 cut(s)	819
HpyCH4V	TGCA	6 cut(s)	124, 461, 650, 890, 1063, 1127
HpyF3I	CTNAG	6 cut(s)	214, 612, 852, 978, 1007, 1034
Hsp92I	GRCGYC	2 cut(s)	207, 288
Hsp92II	CATG	2 cut(s)	811, 1063
HspAI	GCGC	2 cut(s)	288, 582
KasI	GGCGCC	1 cut(s)	287
KpnI	GGTACC	1 cut(s)	524
Kzo9I	GATC	4 cut(s)	200, 493, 676, 715
LmnI	GCTCC	3 cut(s)	201, 729, 1046
Lsp1109I	GCAGC	9 cut(s)	181, 184, 187, 190, 193, 196, 199, 874, 1012
LweI	GCATC	2 cut(s)	208, 637
MaeIII	GTNAC	2 cut(s)	819, 897
MalI	GATC	4 cut(s)	202, 495, 678, 717
MbiI	CCGCTC	1 cut(s)	299
MboI	GATC	4 cut(s)	200, 493, 676, 715
MboII	GAAGA	3 cut(s)	155, 295, 542
MflI	RGATCY	1 cut(s)	715
MhlI	GDGCHC	2 cut(s)	779, 1151
MluCI	AATT	4 cut(s)	629, 787, 973, 993
Mly113I	GGCGCC	1 cut(s)	288
MmeI	TCCRAC	1 cut(s)	261
MseI	TTAA	5 cut(s)	696, 753, 983, 1088, 1170
MslI	CAYNNNNRTG	1 cut(s)	154
MspA1I	CMGCKG	1 cut(s)	1025
MspCI	CTTAAG	2 cut(s)	695, 1087
MspI	CCGG	3 cut(s)	67, 285, 737
MspR9I	CCNGG	1 cut(s)	542
MvaI	CCWGG	1 cut(s)	542
NarI	GGCGCC	1 cut(s)	288
NdeI	CATATG	1 cut(s)	1135
NdeII	GATC	4 cut(s)	200, 493, 676, 715
NlaIII	CATG	2 cut(s)	811, 1063
NlaIV	GGNNCC	6 cut(s)	99, 197, 289, 436, 522, 1150
NspI	RCATGY	1 cut(s)	811
PaeR7I	CTCGAG	2 cut(s)	59, 396
PceI	AGGCCT	1 cut(s)	1039
PciI	ACATGT	1 cut(s)	807
PflFI	GACNNNGTC	1 cut(s)	40
PluTI	GGCGCC	1 cut(s)	291
PscI	ACATGT	1 cut(s)	807
Psp6I	CCWGG	1 cut(s)	540
PspGI	CCWGG	1 cut(s)	540
PspN4I	GGNNCC	6 cut(s)	99, 197, 289, 436, 522, 1150
PspPI	GGNCC	3 cut(s)	64, 97, 434
PspXI	VCTCGAGB	2 cut(s)	59, 396
PstNI	CAGNNNCTG	1 cut(s)	823
PsuI	RGATCY	1 cut(s)	715
PsyI	GACNNNGTC	1 cut(s)	40
RsaI	GTAC	7 cut(s)	57, 394, 510, 522, 701, 1096, 1190
RsaNI	GTAC	7 cut(s)	56, 393, 509, 521, 700, 1095, 1189
RseI	CAYNNNNRTG	1 cut(s)	154
SaqAI	TTAA	5 cut(s)	696, 753, 983, 1088, 1170
Sau3AI	GATC	4 cut(s)	200, 493, 676, 715
Sau96I	GGNCC	3 cut(s)	64, 97, 434
ScaI	AGTACT	1 cut(s)	1096
ScrFI	CCNGG	1 cut(s)	542
SduI	GDGCHC	2 cut(s)	779, 1151
SfaNI	GCATC	2 cut(s)	208, 637
SfcI	CTRYAG	1 cut(s)	1041
SfoI	GGCGCC	1 cut(s)	289
Sfr274I	CTCGAG	2 cut(s)	59, 396
SinI	GGWCC	1 cut(s)	64
SlaI	CTCGAG	2 cut(s)	59, 396
SmiMI	CAYNNNNRTG	1 cut(s)	154
SmlI	CTYRAG	5 cut(s)	59, 396, 695, 1087, 1213
SmoI	CTYRAG	5 cut(s)	59, 396, 695, 1087, 1213
Sse9I	AATT	4 cut(s)	629, 787, 973, 993
SseBI	AGGCCT	1 cut(s)	1039
SsiI	CCGC	6 cut(s)	112, 210, 297, 360, 449, 1023
SspDI	GGCGCC	1 cut(s)	287
SspI	AATATT	1 cut(s)	757
StuI	AGGCCT	1 cut(s)	1039
StyD4I	CCNGG	1 cut(s)	540
TaaI	ACNGT	1 cut(s)	819
TasI	AATT	4 cut(s)	629, 787, 973, 993
TatI	WGTACW	6 cut(s)	55, 392, 508, 699, 1094, 1188
TauI	GCSGC	2 cut(s)	212, 1025
Tru1I	TTAA	5 cut(s)	696, 753, 983, 1088, 1170
Tru9I	TTAA	5 cut(s)	696, 753, 983, 1088, 1170
TscAI	CASTG	1 cut(s)	1202
TseI	GCWGC	9 cut(s)	169, 172, 175, 178, 181, 184, 187, 887, 1025
TspDTI	ATGAA	3 cut(s)	828, 1005, 1048
TspGWI	ACGGA	3 cut(s)	710, 854, 1081
TspRI	CASTG	1 cut(s)	1202
Tth111I	GACNNNGTC	1 cut(s)	40
Vha464I	CTTAAG	2 cut(s)	695, 1087
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	2 cut(s)	629, 973
XceI	RCATGY	1 cut(s)	811
XhoI	CTCGAG	2 cut(s)	59, 396
ZrmI	AGTACT	1 cut(s)	1096

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.