Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001618.1

Orthogroup ID

OG0003644

Physical Location & Seq

Genomic Coordinates Forward (+)

28078 .. 29549

Gene Structure 1472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001618.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

atggctactgtttctcgtgttggaaaatggaggagaaccatacttgtctcagcatcagcagcagcagcaatggcttgtcgaagcttccgatcagacgccgccttagaggctctagccaaagcctccgacgaaaaagtccccagcttgcttctctacaactacccttgtttctccggcgccttctctcgcctcaacctccctctcctctccctccctttgtcctccgtcgaacccttcagatcccatccaatccctctctctctaactttctcatcatccataaatgccctttcaactcaattcttagggttttacagggtactcgagggctggagaggtgctatttcattgattttcttggccccagaggatttgcggtcgagtttgcaaggagagcttcgtgcgagtgagttttccggtacttggactctctctagtgctgtgtatgattacttctctgctaagcttgctgatgttgaatgtcgtaatggatcgtgtggtgatggtgctgagtacattgaggatggagatctccgtcgctggagcttaccggatattagggcgtttaatattggacttagtgaatggcgctcaaagttgaattgctttactaatccatacatgtatgaacagttactggagacaagtgctatggatgttattgctaagggaaagtcttatatttctgctcgacaaaaagctgcaaaaaagttactggataaagctttgaaaataaggttgggcagaggattttatggggagtgtctgggagtgagagctgatgggaattccgagttaagcgatgaaattggcaagcagcttagtgtgaaaagtgccgctgctggtcttaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

284

Amino Acids

31.13

Weight (kDa)

8.98

Isoelectric Point (pI)

50.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09580 AT5G09580
fragaria_vesca	FvH4_1g23320 FvH4_1g23320
malus_domestica	MD10G1056400.v1.1
prunus_persica	Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1
pyrus_communis	pycom10g04330 pycom10g04340
rosa_chinensis	RchiOBHm_Chr2g0118131 RchiOBHm_Chr2g0118141 RchiOBHm_Chr2g0118161
rosa_laevigata	RLG00000018394 RLG00000018395 RLG00000018401
rosa_multiflora	Rmu_sc0001618.1_g000003 Rmu_sc0001618.1_g000008 Rmu_sc0001618.1_g000012 Rmu_sc0009463.1_g000001 Rmu_sc0009463.1_g000017
rosa_roxburghii	Rroxscaffold_2G00125850 Rroxscaffold_2G00125900 Rroxscaffold_3G00234990 Rroxscaffold_4G00309060
rosa_rugosa	Rorug02G0216300 Rorug02G0217100
rosa_samantha	Rh2AG273200 Rh2BG285500 Rh2CG410200 Rh6DG346000 Rh7BG104700
rosa_wichuraiana	Rw2G021570 Rw2G021590 Rw2G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
AccB1I	GGYRCC	1 cut(s)	176
AciI	CCGC	3 cut(s)	99, 376, 837
AclWI	GGATC	2 cut(s)	234, 499
AcsI	RAATTY	1 cut(s)	787
AcuI	CTGAAG	1 cut(s)	220
AcyI	GRCGYC	2 cut(s)	96, 177
AfaI	GTAC	3 cut(s)	321, 421, 515
AfiI	CCNNNNNNNGG	1 cut(s)	423
AflIII	ACRYGT	1 cut(s)	621
AgsI	TTSAA	4 cut(s)	294, 479, 601, 730
AjuI	GAANNNNNNNTTGG	2 cut(s)	722, 754
AluBI	AGCT	9 cut(s)	84, 144, 397, 466, 546, 701, 725, 779, 820
AluI	AGCT	9 cut(s)	84, 144, 397, 466, 546, 701, 725, 779, 820
Alw26I	GTCTC	2 cut(s)	52, 635
AlwI	GGATC	2 cut(s)	234, 499
AlwNI	CAGNNNCTG	1 cut(s)	637
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	1 cut(s)	360
ApeKI	GCWGC	6 cut(s)	59, 62, 65, 701, 817, 839
ApoI	RAATTY	1 cut(s)	787
AspLEI	GCGC	2 cut(s)	179, 591
AspS9I	GGNCC	1 cut(s)	361
AsuHPI	GGTGA	1 cut(s)	512
AvaI	CYCGRG	1 cut(s)	323
BanI	GGYRCC	1 cut(s)	176
BarI	GAAGNNNNNNTAC	2 cut(s)	437, 469
BauI	CACGAG	1 cut(s)	15
BbvI	GCAGC	6 cut(s)	71, 74, 77, 688, 826, 829
BccI	CCATC	4 cut(s)	252, 497, 518, 776
BcoDI	GTCTC	2 cut(s)	52, 635
BfaI	CTAG	2 cut(s)	113, 435
BfoI	RGCGCY	2 cut(s)	180, 592
BglI	GCCNNNNNGGC	1 cut(s)	107
BglII	AGATCT	1 cut(s)	529
BisI	GCNGC	8 cut(s)	60, 63, 66, 99, 702, 818, 837, 840
BlpI	GCTNAGC	1 cut(s)	462
BlsI	GCNGC	8 cut(s)	61, 64, 67, 100, 703, 819, 838, 841
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	361
BmiI	GGNNCC	2 cut(s)	178, 363
BmsI	GCATC	1 cut(s)	62
BpmI	CTGGAG	3 cut(s)	352, 562, 659
Bpu10I	CCTNAGC	1 cut(s)	666
Bpu1102I	GCTNAGC	1 cut(s)	462
BsaBI	GATNNNNATC	1 cut(s)	528
BsaHI	GRCGYC	2 cut(s)	96, 177
BsaWI	WCCGGW	2 cut(s)	416, 550
Bsc4I	CCNNNNNNNGG	1 cut(s)	423
Bse1I	ACTGG	2 cut(s)	642, 720
Bse3DI	GCAATG	1 cut(s)	75
Bse8I	GATNNNNATC	1 cut(s)	528
BseGI	GGATG	4 cut(s)	244, 275, 529, 661
BseJI	GATNNNNATC	1 cut(s)	528
BseLI	CCNNNNNNNGG	1 cut(s)	423
BseMI	GCAATG	1 cut(s)	75
BseMII	CTCAG	2 cut(s)	63, 501
BseNI	ACTGG	2 cut(s)	642, 720
BseRI	GAGGAG	2 cut(s)	46, 194
BseXI	GCAGC	6 cut(s)	71, 74, 77, 688, 826, 829
BseYI	CCCAGC	1 cut(s)	140
Bsh1285I	CGRYCG	1 cut(s)	380
BshFI	GGCC	1 cut(s)	362
BshNI	GGYRCC	1 cut(s)	176
BsiEI	CGRYCG	1 cut(s)	380
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	3 cut(s)	174, 417, 551
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	423
BsmAI	GTCTC	2 cut(s)	52, 635
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	362
BsoBI	CYCGRG	1 cut(s)	323
Bsp143I	GATC	4 cut(s)	89, 239, 491, 529
Bsp1720I	GCTNAGC	1 cut(s)	462
BspACI	CCGC	3 cut(s)	99, 376, 837
BspANI	GGCC	1 cut(s)	362
BspCNI	CTCAG	2 cut(s)	62, 502
BspLI	GGNNCC	2 cut(s)	178, 363
BspPI	GGATC	2 cut(s)	234, 499
BspT107I	GGYRCC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	75
BsrI	ACTGG	2 cut(s)	642, 720
BssMI	GATC	4 cut(s)	89, 239, 491, 529
BssNI	GRCGYC	2 cut(s)	96, 177
BssSI	CACGAG	1 cut(s)	15
Bst2BI	CACGAG	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	10, 633
BstACI	GRCGYC	2 cut(s)	96, 177
BstC8I	GCNNGC	3 cut(s)	146, 468, 815
BstDEI	CTNAG	9 cut(s)	49, 103, 304, 462, 510, 578, 666, 821, 848
BstF5I	GGATG	4 cut(s)	244, 275, 529, 661
BstH2I	RGCGCY	2 cut(s)	180, 592
BstHHI	GCGC	2 cut(s)	179, 591
BstKTI	GATC	4 cut(s)	92, 242, 494, 532
BstMAI	GTCTC	2 cut(s)	52, 635
BstMBI	GATC	4 cut(s)	89, 239, 491, 529
BstMCI	CGRYCG	1 cut(s)	380
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 65, 71, 107, 394, 467
BstNSI	RCATGY	1 cut(s)	625
BstV1I	GCAGC	6 cut(s)	71, 74, 77, 688, 826, 829
BstX2I	RGATCY	2 cut(s)	239, 529
BstYI	RGATCY	2 cut(s)	239, 529
BsuRI	GGCC	1 cut(s)	362
BtgZI	GCGATG	1 cut(s)	816
BtsCI	GGATG	4 cut(s)	244, 275, 529, 661
Cac8I	GCNNGC	3 cut(s)	146, 468, 815
CaiI	CAGNNNCTG	1 cut(s)	637
CfoI	GCGC	2 cut(s)	179, 591
Cfr13I	GGNCC	1 cut(s)	361
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	3 cut(s)	320, 420, 514
CviAII	CATG	1 cut(s)	622
CviQI	GTAC	3 cut(s)	320, 420, 514
DdeI	CTNAG	9 cut(s)	49, 103, 304, 462, 510, 578, 666, 821, 848
DinI	GGCGCC	1 cut(s)	178
DpnI	GATC	4 cut(s)	91, 241, 493, 531
DpnII	GATC	4 cut(s)	89, 239, 491, 529
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	220
Eco88I	CYCGRG	1 cut(s)	323
EcoRI	GAATTC	1 cut(s)	787
EgeI	GGCGCC	1 cut(s)	178
EheI	GGCGCC	1 cut(s)	178
FaeI	CATG	1 cut(s)	625
FaiI	YATR	9 cut(s)	41, 281, 447, 619, 623, 627, 653, 681, 756
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	1 cut(s)	621
Fnu4HI	GCNGC	8 cut(s)	60, 63, 66, 99, 702, 818, 837, 840
FokI	GGATG	4 cut(s)	231, 262, 536, 668
Fsp4HI	GCNGC	8 cut(s)	60, 63, 66, 99, 702, 818, 837, 840
FspBI	CTAG	2 cut(s)	113, 435
GlaI	GCGC	2 cut(s)	178, 590
GluI	GCNGC	8 cut(s)	60, 63, 66, 99, 702, 818, 837, 840
GsaI	CCCAGC	1 cut(s)	144
GsuI	CTGGAG	3 cut(s)	352, 562, 659
HaeII	RGCGCY	2 cut(s)	180, 592
HaeIII	GGCC	1 cut(s)	362
HapII	CCGG	3 cut(s)	174, 417, 551
HgaI	GACGC	1 cut(s)	104
HhaI	GCGC	2 cut(s)	179, 591
Hin1I	GRCGYC	2 cut(s)	96, 177
Hin1II	CATG	1 cut(s)	625
Hin6I	GCGC	2 cut(s)	177, 589
HinP1I	GCGC	2 cut(s)	177, 589
HindIII	AAGCTT	3 cut(s)	82, 464, 723
HinfI	GANTC	1 cut(s)	427
HpaII	CCGG	3 cut(s)	174, 417, 551
HphI	GGTGA	1 cut(s)	512
Hpy188I	TCNGA	5 cut(s)	89, 94, 127, 239, 793
Hpy99I	CGWCG	3 cut(s)	131, 230, 540
HpyAV	CCTTC	2 cut(s)	190, 244
HpyCH4III	ACNGT	2 cut(s)	10, 633
HpyCH4V	TGCA	2 cut(s)	388, 704
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 65, 71, 107, 394, 467
HpyF3I	CTNAG	9 cut(s)	49, 103, 304, 462, 510, 578, 666, 821, 848
Hsp92I	GRCGYC	2 cut(s)	96, 177
Hsp92II	CATG	1 cut(s)	625
HspAI	GCGC	2 cut(s)	177, 589
KasI	GGCGCC	1 cut(s)	176
Kzo9I	GATC	4 cut(s)	89, 239, 491, 529
LmnI	GCTCC	1 cut(s)	543
Lsp1109I	GCAGC	6 cut(s)	71, 74, 77, 688, 826, 829
LweI	GCATC	1 cut(s)	62
MaeI	CTAG	2 cut(s)	113, 435
MaeIII	GTNAC	2 cut(s)	633, 711
MalI	GATC	4 cut(s)	91, 241, 493, 531
MboI	GATC	4 cut(s)	89, 239, 491, 529
MflI	RGATCY	2 cut(s)	239, 529
MluCI	AATT	4 cut(s)	299, 601, 787, 807
Mly113I	GGCGCC	1 cut(s)	177
MlyI	GAGTC	1 cut(s)	421
MmeI	TCCRAC	1 cut(s)	150
MseI	TTAA	2 cut(s)	567, 797
MspA1I	CMGCKG	1 cut(s)	839
MspI	CCGG	3 cut(s)	174, 417, 551
MwoI	GCNNNNNNNGC	6 cut(s)	59, 65, 71, 107, 394, 467
NarI	GGCGCC	1 cut(s)	177
NdeII	GATC	4 cut(s)	89, 239, 491, 529
NlaIII	CATG	1 cut(s)	625
NlaIV	GGNNCC	2 cut(s)	178, 363
NspI	RCATGY	1 cut(s)	625
PaeR7I	CTCGAG	1 cut(s)	323
PciI	ACATGT	1 cut(s)	621
PcsI	WCGNNNNNNNCGW	1 cut(s)	85
PkrI	GCNGC	8 cut(s)	61, 64, 67, 100, 703, 819, 838, 841
PleI	GAGTC	1 cut(s)	421
PluTI	GGCGCC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	421
PscI	ACATGT	1 cut(s)	621
PspFI	CCCAGC	1 cut(s)	140
PspN4I	GGNNCC	2 cut(s)	178, 363
PspPI	GGNCC	1 cut(s)	361
PspXI	VCTCGAGB	1 cut(s)	323
PstNI	CAGNNNCTG	1 cut(s)	637
PsuI	RGATCY	2 cut(s)	239, 529
RsaI	GTAC	3 cut(s)	321, 421, 515
RsaNI	GTAC	3 cut(s)	320, 420, 514
SaqAI	TTAA	2 cut(s)	567, 797
SatI	GCNGC	8 cut(s)	60, 63, 66, 99, 702, 818, 837, 840
Sau3AI	GATC	4 cut(s)	89, 239, 491, 529
Sau96I	GGNCC	1 cut(s)	361
SchI	GAGTC	1 cut(s)	421
SfaNI	GCATC	1 cut(s)	62
SfoI	GGCGCC	1 cut(s)	178
Sfr274I	CTCGAG	1 cut(s)	323
SlaI	CTCGAG	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	4 cut(s)	299, 601, 787, 807
SsiI	CCGC	3 cut(s)	99, 376, 837
SspDI	GGCGCC	1 cut(s)	176
SspI	AATATT	1 cut(s)	571
SspMI	CTAG	2 cut(s)	113, 435
TaaI	ACNGT	2 cut(s)	10, 633
TaqI	TCGA	5 cut(s)	79, 228, 324, 380, 691
TasI	AATT	4 cut(s)	299, 601, 787, 807
TatI	WGTACW	1 cut(s)	513
TauI	GCSGC	2 cut(s)	101, 839
Tru1I	TTAA	2 cut(s)	567, 797
Tru9I	TTAA	2 cut(s)	567, 797
TseI	GCWGC	6 cut(s)	59, 62, 65, 701, 817, 839
TspDTI	ATGAA	3 cut(s)	336, 642, 819
TspGWI	ACGGA	2 cut(s)	214, 524
XapI	RAATTY	1 cut(s)	787
XceI	RCATGY	1 cut(s)	625
XhoI	CTCGAG	1 cut(s)	323
XspI	CTAG	2 cut(s)	113, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.