Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003644

Physical Location & Seq

Genomic Coordinates Forward (+)

60921375 .. 60924283

Gene Structure 2909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00125850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCTCTTTCTTCCGTTGGAAAATGGAGGAGAACCATAGCACTCTCAGCAGCAATGGCTCCTCTTCCTCTATCACATACCCGAAGCTTCCGATCAGACGCCGCCTTAGAAGCTCTATCCAAAGCCTCCGACGAAAAAGTCCCCTACTTGCTTCTCTACAACTACCCTTCTTTCTCCGGCGCCTTCTCCGCTCTCTTTGCTCACCTCTTCCACTCTCGCCTCAACCTCCCTCTCCTCTCTCTCCCTTCTCTTCCGTCGAACCCTTCAGGGTCGATGATTTGTGTACTCGAGGACTGGAGAGGTGCTACTTCCTTGATTTTCTTGGCCCCAAAGGATTTGCCGTCGAGTTTGCAAGGAGAGCTTCGTGCGATTCTAATTAGGGTAATTGCTTTCGATCATCGAAAATCTGTACTACCGGCGATGCCCTCGGATGAGGATTGCCCCGACAATCTCACATTTCGAGTGAATACTGAAAAGAGTAGCTCTAGTGCTGTGTATGATTACTTCTCTGCTAAGCTTGCTGATGTTGAATGTCGTAATGGAATGGATGCAAGTTTGTTACAAGTTGAGGACAGGGATCGTGTGGAGATGGTGCTTAAGTACGTTGAGGATGGAGATCTCCGTCGCTGGAGCTTACCGGATATTAGGGCGTTTAATATTGGACTTGGTGAATGGCGCTCAAAGTTGAATTGCTTTACTAATCCATACATGTATGAACAGTTACTGGAGATAAGTGCTACGGATGTTATTGCTAAGGGAAAGTCATATATATCTGCTCGCCAAAAGGCTGCAAATAAGTTACTGGACAAAGCTCTGAAAATAAGGTTGGGCAGAGGATTTTACGGGGAGTGTCTGGGAGTGAGAGCTGATGGGAATTCCGAGTTAAGTGATGAAATTGGCAAGCAACTTAGTGTAAAAAGTGCCGCTGCTGGCCTAAGGCCTATAGGAGCTGTTATATTCATGCAACGGAGAAACCTCAAAATGTGCTTAAGGAGTACTGATACTGCTACTGATACCTGTGAAGTTGCAAAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

345

Amino Acids

38.14

Weight (kDa)

8.74

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09580 AT5G09580
fragaria_vesca	FvH4_1g23320 FvH4_1g23320
malus_domestica	MD10G1056400.v1.1
prunus_persica	Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1
pyrus_communis	pycom10g04330 pycom10g04340
rosa_chinensis	RchiOBHm_Chr2g0118131 RchiOBHm_Chr2g0118141 RchiOBHm_Chr2g0118161
rosa_laevigata	RLG00000018394 RLG00000018395 RLG00000018401
rosa_multiflora	Rmu_sc0001618.1_g000003 Rmu_sc0001618.1_g000008 Rmu_sc0001618.1_g000012 Rmu_sc0009463.1_g000001 Rmu_sc0009463.1_g000017
rosa_roxburghii	Rroxscaffold_2G00125850 Rroxscaffold_2G00125900 Rroxscaffold_3G00234990 Rroxscaffold_4G00309060
rosa_rugosa	Rorug02G0216300 Rorug02G0217100
rosa_samantha	Rh2AG273200 Rh2BG285500 Rh2CG410200 Rh6DG346000 Rh7BG104700
rosa_wichuraiana	Rw2G021570 Rw2G021590 Rw2G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	179
AccBSI	CCGCTC	1 cut(s)	191
AciI	CCGC	3 cut(s)	102, 189, 924
AclWI	GGATC	1 cut(s)	585
AcsI	RAATTY	1 cut(s)	874
AcuI	CTGAAG	1 cut(s)	249
AcyI	GRCGYC	2 cut(s)	99, 180
AfaI	GTAC	4 cut(s)	285, 411, 602, 997
AflII	CTTAAG	2 cut(s)	596, 988
AflIII	ACRYGT	1 cut(s)	708
AgsI	TTSAA	2 cut(s)	530, 688
AjuI	GAANNNNNNNTTGG	2 cut(s)	809, 841
AluBI	AGCT	9 cut(s)	87, 113, 361, 483, 517, 633, 812, 866, 950
AluI	AGCT	9 cut(s)	87, 113, 361, 483, 517, 633, 812, 866, 950
AlwI	GGATC	1 cut(s)	585
AlwNI	CAGNNNCTG	1 cut(s)	724
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	3 cut(s)	324, 931, 938
ApeKI	GCWGC	3 cut(s)	50, 788, 926
ApoI	RAATTY	1 cut(s)	874
AspLEI	GCGC	2 cut(s)	182, 678
AspS9I	GGNCC	1 cut(s)	325
AsuHPI	GGTGA	2 cut(s)	194, 680
AvaI	CYCGRG	1 cut(s)	287
AxyI	CCTNAGG	1 cut(s)	935
BanI	GGYRCC	1 cut(s)	179
BarI	GAAGNNNNNNTAC	2 cut(s)	488, 520
BbvI	GCAGC	3 cut(s)	62, 775, 913
BccI	CCATC	3 cut(s)	583, 605, 863
BceAI	ACGGC	1 cut(s)	325
BfaI	CTAG	1 cut(s)	486
BfmI	CTRYAG	1 cut(s)	942
BfoI	RGCGCY	2 cut(s)	183, 679
BfrI	CTTAAG	2 cut(s)	596, 988
BglII	AGATCT	1 cut(s)	616
BisI	GCNGC	5 cut(s)	51, 102, 789, 924, 927
BlpI	GCTNAGC	1 cut(s)	513
BlsI	GCNGC	5 cut(s)	52, 103, 790, 925, 928
BmcAI	AGTACT	1 cut(s)	997
BmeT110I	CYCGRG	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	3 cut(s)	60, 181, 327
BmsI	GCATC	2 cut(s)	411, 538
BpmI	CTGGAG	3 cut(s)	316, 649, 746
Bpu10I	CCTNAGC	1 cut(s)	753
Bpu1102I	GCTNAGC	1 cut(s)	513
BsaBI	GATNNNNATC	1 cut(s)	615
BsaHI	GRCGYC	2 cut(s)	99, 180
BsaJI	CCNNGG	1 cut(s)	426
BsaWI	WCCGGW	1 cut(s)	637
Bse118I	RCCGGY	1 cut(s)	415
Bse1I	ACTGG	3 cut(s)	299, 729, 807
Bse21I	CCTNAGG	1 cut(s)	935
Bse3DI	GCAATG	1 cut(s)	60
Bse8I	GATNNNNATC	1 cut(s)	615
BseDI	CCNNGG	1 cut(s)	426
BseGI	GGATG	4 cut(s)	436, 553, 616, 748
BseJI	GATNNNNATC	1 cut(s)	615
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	3 cut(s)	299, 729, 807
BseRI	GAGGAG	3 cut(s)	43, 51, 224
BseXI	GCAGC	3 cut(s)	62, 775, 913
BshFI	GGCC	3 cut(s)	326, 933, 940
BshNI	GGYRCC	1 cut(s)	179
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	3 cut(s)	177, 416, 638
BslFI	GGGAC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	3 cut(s)	326, 933, 940
BsoBI	CYCGRG	1 cut(s)	287
Bsp143I	GATC	4 cut(s)	92, 394, 577, 616
Bsp1720I	GCTNAGC	1 cut(s)	513
BspACI	CCGC	3 cut(s)	102, 189, 924
BspANI	GGCC	3 cut(s)	326, 933, 940
BspCNI	CTCAG	1 cut(s)	59
BspLI	GGNNCC	3 cut(s)	60, 181, 327
BspPI	GGATC	1 cut(s)	585
BspT107I	GGYRCC	1 cut(s)	179
BspTI	CTTAAG	2 cut(s)	596, 988
BsrBI	CCGCTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	60
BsrFI	RCCGGY	1 cut(s)	415
BsrI	ACTGG	3 cut(s)	299, 729, 807
BssAI	RCCGGY	1 cut(s)	415
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	4 cut(s)	92, 394, 577, 616
BssNI	GRCGYC	2 cut(s)	99, 180
Bst4CI	ACNGT	1 cut(s)	720
Bst6I	CTCTTC	3 cut(s)	69, 212, 255
BstACI	GRCGYC	2 cut(s)	99, 180
BstAFI	CTTAAG	2 cut(s)	596, 988
BstC8I	GCNNGC	4 cut(s)	519, 778, 902, 931
BstDEI	CTNAG	6 cut(s)	46, 106, 513, 753, 908, 935
BstF5I	GGATG	4 cut(s)	436, 553, 616, 748
BstH2I	RGCGCY	2 cut(s)	183, 679
BstHHI	GCGC	2 cut(s)	182, 678
BstKTI	GATC	4 cut(s)	95, 397, 580, 619
BstMBI	GATC	4 cut(s)	92, 394, 577, 616
BstMWI	GCNNNNNNNGC	7 cut(s)	47, 56, 110, 188, 197, 358, 518
BstNSI	RCATGY	1 cut(s)	712
BstSFI	CTRYAG	1 cut(s)	942
BstV1I	GCAGC	3 cut(s)	62, 775, 913
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
Bsu36I	CCTNAGG	1 cut(s)	935
BsuRI	GGCC	3 cut(s)	326, 933, 940
BtgZI	GCGATG	1 cut(s)	434
BtsCI	GGATG	4 cut(s)	436, 553, 616, 748
Cac8I	GCNNGC	4 cut(s)	519, 778, 902, 931
CaiI	CAGNNNCTG	1 cut(s)	724
CfoI	GCGC	2 cut(s)	182, 678
Cfr10I	RCCGGY	1 cut(s)	415
Cfr13I	GGNCC	1 cut(s)	325
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	4 cut(s)	284, 410, 601, 996
CviAII	CATG	2 cut(s)	709, 961
CviQI	GTAC	4 cut(s)	284, 410, 601, 996
DdeI	CTNAG	6 cut(s)	46, 106, 513, 753, 908, 935
DinI	GGCGCC	1 cut(s)	181
DpnI	GATC	4 cut(s)	94, 396, 579, 618
DpnII	GATC	4 cut(s)	92, 394, 577, 616
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
Eam1104I	CTCTTC	3 cut(s)	69, 212, 255
EarI	CTCTTC	3 cut(s)	69, 212, 255
Eco147I	AGGCCT	1 cut(s)	940
Eco57I	CTGAAG	1 cut(s)	249
Eco81I	CCTNAGG	1 cut(s)	935
Eco88I	CYCGRG	1 cut(s)	287
EcoRI	GAATTC	1 cut(s)	874
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
FaeI	CATG	2 cut(s)	712, 964
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	2 cut(s)	708, 960
Fnu4HI	GCNGC	5 cut(s)	51, 102, 789, 924, 927
FokI	GGATG	4 cut(s)	443, 560, 623, 755
Fsp4HI	GCNGC	5 cut(s)	51, 102, 789, 924, 927
FspBI	CTAG	1 cut(s)	486
GlaI	GCGC	2 cut(s)	181, 677
GluI	GCNGC	5 cut(s)	51, 102, 789, 924, 927
GsuI	CTGGAG	3 cut(s)	316, 649, 746
HaeII	RGCGCY	2 cut(s)	183, 679
HaeIII	GGCC	3 cut(s)	326, 933, 940
HapII	CCGG	3 cut(s)	177, 416, 638
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	2 cut(s)	182, 678
Hin1I	GRCGYC	2 cut(s)	99, 180
Hin1II	CATG	2 cut(s)	712, 964
Hin6I	GCGC	2 cut(s)	180, 676
HinP1I	GCGC	2 cut(s)	180, 676
HindIII	AAGCTT	2 cut(s)	85, 515
HinfI	GANTC	1 cut(s)	370
HpaII	CCGG	3 cut(s)	177, 416, 638
HphI	GGTGA	2 cut(s)	194, 680
Hpy166II	GTNNAC	1 cut(s)	284
Hpy188I	TCNGA	6 cut(s)	92, 97, 130, 430, 816, 880
Hpy8I	GTNNAC	1 cut(s)	284
Hpy99I	CGWCG	4 cut(s)	134, 259, 346, 627
HpyAV	CCTTC	4 cut(s)	177, 193, 255, 273
HpyCH4III	ACNGT	1 cut(s)	720
HpyCH4IV	ACGT	1 cut(s)	603
HpyCH4V	TGCA	5 cut(s)	352, 551, 791, 964, 1028
HpyF10VI	GCNNNNNNNGC	7 cut(s)	47, 56, 110, 188, 197, 358, 518
HpyF3I	CTNAG	6 cut(s)	46, 106, 513, 753, 908, 935
HpySE526I	ACGT	1 cut(s)	603
Hsp92I	GRCGYC	2 cut(s)	99, 180
Hsp92II	CATG	2 cut(s)	712, 964
HspAI	GCGC	2 cut(s)	180, 676
KasI	GGCGCC	1 cut(s)	179
Kzo9I	GATC	4 cut(s)	92, 394, 577, 616
LmnI	GCTCC	3 cut(s)	64, 630, 947
Lsp1109I	GCAGC	3 cut(s)	62, 775, 913
LweI	GCATC	2 cut(s)	411, 538
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	1 cut(s)	603
MaeIII	GTNAC	3 cut(s)	558, 720, 798
MalI	GATC	4 cut(s)	94, 396, 579, 618
MbiI	CCGCTC	1 cut(s)	191
MboI	GATC	4 cut(s)	92, 394, 577, 616
MboII	GAAGA	4 cut(s)	3, 56, 199, 242
MflI	RGATCY	1 cut(s)	616
MluCI	AATT	5 cut(s)	375, 384, 688, 874, 894
Mly113I	GGCGCC	1 cut(s)	180
MmeI	TCCRAC	1 cut(s)	153
MseI	TTAA	4 cut(s)	597, 654, 884, 989
MspA1I	CMGCKG	1 cut(s)	926
MspCI	CTTAAG	2 cut(s)	596, 988
MspI	CCGG	3 cut(s)	177, 416, 638
MwoI	GCNNNNNNNGC	7 cut(s)	47, 56, 110, 188, 197, 358, 518
NarI	GGCGCC	1 cut(s)	180
NdeII	GATC	4 cut(s)	92, 394, 577, 616
NlaIII	CATG	2 cut(s)	712, 964
NlaIV	GGNNCC	3 cut(s)	60, 181, 327
NspI	RCATGY	1 cut(s)	712
PaeR7I	CTCGAG	1 cut(s)	287
PceI	AGGCCT	1 cut(s)	940
PciI	ACATGT	1 cut(s)	708
PfeI	GAWTC	1 cut(s)	370
PkrI	GCNGC	5 cut(s)	52, 103, 790, 925, 928
PluTI	GGCGCC	1 cut(s)	183
PscI	ACATGT	1 cut(s)	708
PspN4I	GGNNCC	3 cut(s)	60, 181, 327
PspPI	GGNCC	1 cut(s)	325
PspXI	VCTCGAGB	1 cut(s)	287
PstNI	CAGNNNCTG	1 cut(s)	724
PsuI	RGATCY	1 cut(s)	616
RsaI	GTAC	4 cut(s)	285, 411, 602, 997
RsaNI	GTAC	4 cut(s)	284, 410, 601, 996
SaqAI	TTAA	4 cut(s)	597, 654, 884, 989
SatI	GCNGC	5 cut(s)	51, 102, 789, 924, 927
Sau3AI	GATC	4 cut(s)	92, 394, 577, 616
Sau96I	GGNCC	1 cut(s)	325
ScaI	AGTACT	1 cut(s)	997
SfaNI	GCATC	2 cut(s)	411, 538
SfcI	CTRYAG	1 cut(s)	942
SfoI	GGCGCC	1 cut(s)	181
Sfr274I	CTCGAG	1 cut(s)	287
SlaI	CTCGAG	1 cut(s)	287
SmlI	CTYRAG	3 cut(s)	287, 596, 988
SmoI	CTYRAG	3 cut(s)	287, 596, 988
Sse9I	AATT	5 cut(s)	375, 384, 688, 874, 894
SseBI	AGGCCT	1 cut(s)	940
SsiI	CCGC	3 cut(s)	102, 189, 924
SspDI	GGCGCC	1 cut(s)	179
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	1 cut(s)	486
StuI	AGGCCT	1 cut(s)	940
TaaI	ACNGT	1 cut(s)	720
TaiI	ACGT	1 cut(s)	606
TaqI	TCGA	7 cut(s)	257, 272, 288, 344, 393, 400, 460
TasI	AATT	5 cut(s)	375, 384, 688, 874, 894
TatI	WGTACW	3 cut(s)	283, 409, 995
TauI	GCSGC	2 cut(s)	104, 926
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	4 cut(s)	597, 654, 884, 989
Tru9I	TTAA	4 cut(s)	597, 654, 884, 989
TseI	GCWGC	3 cut(s)	50, 788, 926
TspDTI	ATGAA	3 cut(s)	729, 906, 949
TspGWI	ACGGA	5 cut(s)	4, 243, 611, 755, 982
Vha464I	CTTAAG	2 cut(s)	596, 988
XapI	RAATTY	1 cut(s)	874
XceI	RCATGY	1 cut(s)	712
XhoI	CTCGAG	1 cut(s)	287
XspI	CTAG	1 cut(s)	486
ZrmI	AGTACT	1 cut(s)	997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.