Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003644

Physical Location & Seq

Genomic Coordinates Reverse (-)

20833231 .. 20893873

Gene Structure 60643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0217100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCTTTACTCGGAGACGACGGCCGTGGCTACGAGCTGGCCTGTAAGCTCGAGTCCTGCAACGTCTGGCGCACCTGGCTCGGCGACTCCAACTACGCCACCTTCGTCCACTTCCTCTCCTCCCCCTCCACCTGGGACAACTTCATGCGATCCGACGACTCCAAATCTAGGGCTCAGATCCAACTCCAACTCCGCGCCCGTGCCCTCCTCTTCGACAAGGCCTGCGTCTCTCTCTTCCTCCGCCCCGATTCCGATTCCAATTCCTCCTCTTCTTCTTCTTCTTCTTCTTCGCTCGCCGTTTCCAAGCTCAATCCCACCTATTTGCAGTTGCATGCTGATGACGTGTACTTCACTCTCGAGAATTCTTCCGCTGGAGGAGTTCAGGTTCAACAGCGCGACGCGTCCAAGATTCAATCAAAAACAGCTTTTGGTTTTGGATCAAGATATGGAGAATCTGAAATTGATAATAAGCCACCGAGGTCTAAAAATGAAGAGCTGCCTGAGACCTGGTATAATCAGGTTATTGAGAGACATAGGGCTAGCATACCGCATAGGTTTTCATCAGCAGACCGAGAATCAGAGAACCGTACTCCAGAGGAGATGTCTGCTTATCTTAAGCTTGCTGTGAAGCATAAGAAAAGGTGTTTAGCATTCAAAGAAGATCAGTATGTGGGATATGGAAATCCCCTCCTAGAAAATGCATCACAGAATCCACATTCTGTTTTAGATGGTAGTAGTTCAATTGATCATGAAGGATCTTTTTTCCCAGAAACAATGTTTACGTCGAACTGTGTTCCTGAATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

268

Amino Acids

30.04

Weight (kDa)

5.68

Isoelectric Point (pI)

53.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09580 AT5G09580
fragaria_vesca	FvH4_1g23320 FvH4_1g23320
malus_domestica	MD10G1056400.v1.1
prunus_persica	Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1
pyrus_communis	pycom10g04330 pycom10g04340
rosa_chinensis	RchiOBHm_Chr2g0118131 RchiOBHm_Chr2g0118141 RchiOBHm_Chr2g0118161
rosa_laevigata	RLG00000018394 RLG00000018395 RLG00000018401
rosa_multiflora	Rmu_sc0001618.1_g000003 Rmu_sc0001618.1_g000008 Rmu_sc0001618.1_g000012 Rmu_sc0009463.1_g000001 Rmu_sc0009463.1_g000017
rosa_roxburghii	Rroxscaffold_2G00125850 Rroxscaffold_2G00125900 Rroxscaffold_3G00234990 Rroxscaffold_4G00309060
rosa_rugosa	Rorug02G0216300 Rorug02G0217100
rosa_samantha	Rh2AG273200 Rh2BG285500 Rh2CG410200 Rh6DG346000 Rh7BG104700
rosa_wichuraiana	Rw2G021570 Rw2G021590 Rw2G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	195, 396, 401
AciI	CCGC	4 cut(s)	193, 241, 369, 548
AclWI	GGATC	4 cut(s)	144, 172, 445, 763
AcoI	YGGCCR	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	361
AfaI	GTAC	2 cut(s)	347, 589
AfiI	CCNNNNNNNGG	2 cut(s)	132, 168
AflII	CTTAAG	1 cut(s)	614
AflIII	ACRYGT	2 cut(s)	342, 399
AgsI	TTSAA	4 cut(s)	389, 413, 655, 741
AjiI	CACGTC	1 cut(s)	343
AjnI	CCWGG	3 cut(s)	74, 131, 506
AloI	GAACNNNNNNTCC	2 cut(s)	369, 401
AluBI	AGCT	6 cut(s)	37, 49, 307, 425, 496, 619
AluI	AGCT	6 cut(s)	37, 49, 307, 425, 496, 619
Alw26I	GTCTC	4 cut(s)	9, 232, 497, 523
AlwI	GGATC	4 cut(s)	144, 172, 445, 763
Ama87I	CYCGRG	2 cut(s)	50, 356
AoxI	GGCC	3 cut(s)	22, 39, 219
ApeKI	GCWGC	1 cut(s)	496
ApoI	RAATTY	1 cut(s)	361
AspLEI	GCGC	3 cut(s)	72, 197, 396
AsuNHI	GCTAGC	1 cut(s)	539
AvaI	CYCGRG	2 cut(s)	50, 356
BaeGI	GKGCMC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	175
BbvI	GCAGC	1 cut(s)	483
BccI	CCATC	1 cut(s)	722
BceAI	ACGGC	3 cut(s)	9, 37, 281
BcgI	CGANNNNNNTGC	2 cut(s)	61, 95
BciT130I	CCWGG	3 cut(s)	76, 133, 508
BclI	TGATCA	1 cut(s)	745
BcoDI	GTCTC	4 cut(s)	9, 232, 497, 523
BfaI	CTAG	3 cut(s)	168, 540, 692
BfrI	CTTAAG	1 cut(s)	614
BisI	GCNGC	1 cut(s)	497
BlsI	GCNGC	1 cut(s)	498
Bme1390I	CCNGG	3 cut(s)	76, 133, 508
BmeT110I	CYCGRG	2 cut(s)	50, 356
BmgBI	CACGTC	1 cut(s)	343
BmrFI	CCNGG	3 cut(s)	76, 133, 508
BmsI	GCATC	1 cut(s)	710
BmtI	GCTAGC	1 cut(s)	543
BpmI	CTGGAG	2 cut(s)	393, 576
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	3 cut(s)	25, 132, 476
BsaXI	ACNNNNNCTCC	6 cut(s)	101, 131, 174, 204, 369, 399
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 168
BseBI	CCWGG	3 cut(s)	76, 133, 508
BseDI	CCNNGG	3 cut(s)	25, 132, 476
BseLI	CCNNNNNNNGG	2 cut(s)	132, 168
BseMII	CTCAG	2 cut(s)	188, 492
BseRI	GAGGAG	5 cut(s)	109, 197, 256, 390, 611
BseSI	GKGCMC	1 cut(s)	205
BseX3I	CGGCCG	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	483
Bsh1236I	CGCG	3 cut(s)	195, 396, 401
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	3 cut(s)	24, 41, 221
BsiEI	CGRYCG	1 cut(s)	25
BsiHKCI	CYCGRG	2 cut(s)	50, 356
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	2 cut(s)	132, 168
BsmAI	GTCTC	4 cut(s)	9, 232, 497, 523
BsmBI	CGTCTC	2 cut(s)	9, 232
BsmFI	GGGAC	1 cut(s)	149
BsmI	GAATGC	1 cut(s)	650
BsnI	GGCC	3 cut(s)	24, 41, 221
Bso31I	GGTCTC	1 cut(s)	497
BsoBI	CYCGRG	2 cut(s)	50, 356
Bsp1286I	GDGCHC	2 cut(s)	175, 205
Bsp143I	GATC	6 cut(s)	149, 177, 437, 661, 745, 755
BspACI	CCGC	4 cut(s)	193, 241, 369, 548
BspANI	GGCC	3 cut(s)	24, 41, 221
BspCNI	CTCAG	2 cut(s)	187, 493
BspFNI	CGCG	3 cut(s)	195, 396, 401
BspHI	TCATGA	1 cut(s)	748
BspOI	GCTAGC	1 cut(s)	543
BspPI	GGATC	4 cut(s)	144, 172, 445, 763
BspQI	GCTCTTC	1 cut(s)	486
BspTI	CTTAAG	1 cut(s)	614
BspTNI	GGTCTC	1 cut(s)	497
BssECI	CCNNGG	3 cut(s)	25, 132, 476
BssMI	GATC	6 cut(s)	149, 177, 437, 661, 745, 755
Bst2UI	CCWGG	3 cut(s)	76, 133, 508
Bst4CI	ACNGT	2 cut(s)	587, 791
Bst6I	CTCTTC	4 cut(s)	215, 239, 274, 486
BstAFI	CTTAAG	1 cut(s)	614
BstC8I	GCNNGC	6 cut(s)	39, 223, 294, 333, 541, 621
BstDEI	CTNAG	2 cut(s)	174, 501
BstDSI	CCRYGG	1 cut(s)	25
BstFNI	CGCG	3 cut(s)	195, 396, 401
BstHHI	GCGC	3 cut(s)	72, 197, 396
BstKTI	GATC	6 cut(s)	152, 180, 440, 664, 748, 758
BstMAI	GTCTC	4 cut(s)	9, 232, 497, 523
BstMBI	GATC	6 cut(s)	149, 177, 437, 661, 745, 755
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstNI	CCWGG	3 cut(s)	76, 133, 508
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	3 cut(s)	74, 131, 506
BstSLI	GKGCMC	1 cut(s)	205
BstUI	CGCG	3 cut(s)	195, 396, 401
BstV1I	GCAGC	1 cut(s)	483
BstX2I	RGATCY	2 cut(s)	177, 755
BstYI	RGATCY	2 cut(s)	177, 755
BstZI	CGGCCG	1 cut(s)	22
BsuRI	GGCC	3 cut(s)	24, 41, 221
BtgI	CCRYGG	1 cut(s)	25
BtrI	CACGTC	1 cut(s)	343
Cac8I	GCNNGC	6 cut(s)	39, 223, 294, 333, 541, 621
CciI	TCATGA	1 cut(s)	748
CfoI	GCGC	3 cut(s)	72, 197, 396
CseI	GACGC	3 cut(s)	214, 390, 407
CsiI	ACCWGGT	1 cut(s)	506
Csp6I	GTAC	2 cut(s)	346, 588
CviAII	CATG	3 cut(s)	145, 332, 749
CviQI	GTAC	2 cut(s)	346, 588
DdeI	CTNAG	2 cut(s)	174, 501
DpnI	GATC	6 cut(s)	151, 179, 439, 663, 747, 757
DpnII	GATC	6 cut(s)	149, 177, 437, 661, 745, 755
EaeI	YGGCCR	1 cut(s)	22
EagI	CGGCCG	1 cut(s)	22
Eam1104I	CTCTTC	4 cut(s)	215, 239, 274, 486
EarI	CTCTTC	4 cut(s)	215, 239, 274, 486
EciI	GGCGGA	1 cut(s)	230
EclXI	CGGCCG	1 cut(s)	22
Eco147I	AGGCCT	1 cut(s)	221
Eco24I	GRGCYC	1 cut(s)	175
Eco31I	GGTCTC	1 cut(s)	497
Eco52I	CGGCCG	1 cut(s)	22
Eco88I	CYCGRG	2 cut(s)	50, 356
EcoRI	GAATTC	1 cut(s)	361
EcoRII	CCWGG	3 cut(s)	74, 131, 506
EcoT22I	ATGCAT	1 cut(s)	703
EcoT38I	GRGCYC	1 cut(s)	175
Esp3I	CGTCTC	2 cut(s)	9, 232
FaeI	CATG	3 cut(s)	148, 335, 752
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	3 cut(s)	144, 331, 748
FbaI	TGATCA	1 cut(s)	745
Fnu4HI	GCNGC	1 cut(s)	497
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	497
FspBI	CTAG	3 cut(s)	168, 540, 692
GlaI	GCGC	3 cut(s)	71, 196, 395
GluI	GCNGC	1 cut(s)	497
GsuI	CTGGAG	2 cut(s)	393, 576
HaeIII	GGCC	3 cut(s)	24, 41, 221
HgaI	GACGC	3 cut(s)	214, 390, 407
HhaI	GCGC	3 cut(s)	72, 197, 396
Hin1II	CATG	3 cut(s)	148, 335, 752
Hin6I	GCGC	3 cut(s)	70, 195, 394
HinP1I	GCGC	3 cut(s)	70, 195, 394
HindIII	AAGCTT	1 cut(s)	617
Hpy166II	GTNNAC	3 cut(s)	109, 346, 780
Hpy188I	TCNGA	6 cut(s)	14, 154, 177, 253, 457, 580
Hpy188III	TCNNGA	7 cut(s)	356, 358, 441, 593, 749, 797, 804
Hpy8I	GTNNAC	3 cut(s)	109, 346, 780
Hpy99I	CGWCG	4 cut(s)	23, 158, 401, 787
HpyAV	CCTTC	2 cut(s)	112, 746
HpyCH4III	ACNGT	2 cut(s)	587, 791
HpyCH4IV	ACGT	3 cut(s)	63, 342, 782
HpyCH4V	TGCA	4 cut(s)	60, 325, 331, 701
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpyF3I	CTNAG	2 cut(s)	174, 501
HpySE526I	ACGT	3 cut(s)	63, 342, 782
Hsp92II	CATG	3 cut(s)	148, 335, 752
HspAI	GCGC	3 cut(s)	70, 195, 394
Ksp22I	TGATCA	1 cut(s)	745
Kzo9I	GATC	6 cut(s)	149, 177, 437, 661, 745, 755
LguI	GCTCTTC	1 cut(s)	486
Lsp1109I	GCAGC	1 cut(s)	483
LweI	GCATC	1 cut(s)	710
MabI	ACCWGGT	1 cut(s)	506
MaeI	CTAG	3 cut(s)	168, 540, 692
MaeII	ACGT	3 cut(s)	63, 342, 782
MalI	GATC	6 cut(s)	151, 179, 439, 663, 747, 757
MboI	GATC	6 cut(s)	149, 177, 437, 661, 745, 755
MfeI	CAATTG	1 cut(s)	741
MflI	RGATCY	2 cut(s)	177, 755
MhlI	GDGCHC	2 cut(s)	175, 205
MluCI	AATT	4 cut(s)	259, 361, 459, 741
MluI	ACGCGT	1 cut(s)	399
MlyI	GAGTC	3 cut(s)	62, 80, 152
MmeI	TCCRAC	4 cut(s)	114, 177, 205, 211
Mph1103I	ATGCAT	1 cut(s)	703
MseI	TTAA	1 cut(s)	615
MslI	CAYNNNNRTG	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	371
MspCI	CTTAAG	1 cut(s)	614
MspR9I	CCNGG	3 cut(s)	76, 133, 508
MunI	CAATTG	1 cut(s)	741
Mva1269I	GAATGC	1 cut(s)	650
MvaI	CCWGG	3 cut(s)	76, 133, 508
MvnI	CGCG	3 cut(s)	195, 396, 401
MwoI	GCNNNNNNNGC	1 cut(s)	76
NdeII	GATC	6 cut(s)	149, 177, 437, 661, 745, 755
NheI	GCTAGC	1 cut(s)	539
NlaIII	CATG	3 cut(s)	148, 335, 752
NmeAIII	GCCGAG	1 cut(s)	60
NsiI	ATGCAT	1 cut(s)	703
NspI	RCATGY	1 cut(s)	335
PaeI	GCATGC	1 cut(s)	335
PaeR7I	CTCGAG	2 cut(s)	50, 356
PagI	TCATGA	1 cut(s)	748
PceI	AGGCCT	1 cut(s)	221
PciSI	GCTCTTC	1 cut(s)	486
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PctI	GAATGC	1 cut(s)	650
PfeI	GAWTC	7 cut(s)	248, 254, 409, 452, 575, 709, 800
PkrI	GCNGC	1 cut(s)	498
PleI	GAGTC	3 cut(s)	61, 80, 152
PpsI	GAGTC	3 cut(s)	61, 80, 152
Psp6I	CCWGG	3 cut(s)	74, 131, 506
PspGI	CCWGG	3 cut(s)	74, 131, 506
PspXI	VCTCGAGB	1 cut(s)	50
PsuI	RGATCY	2 cut(s)	177, 755
RsaI	GTAC	2 cut(s)	347, 589
RsaNI	GTAC	2 cut(s)	346, 588
RseI	CAYNNNNRTG	1 cut(s)	336
SapI	GCTCTTC	1 cut(s)	486
SaqAI	TTAA	1 cut(s)	615
SatI	GCNGC	1 cut(s)	497
Sau3AI	GATC	6 cut(s)	149, 177, 437, 661, 745, 755
SchI	GAGTC	3 cut(s)	62, 80, 152
ScrFI	CCNGG	3 cut(s)	76, 133, 508
SduI	GDGCHC	2 cut(s)	175, 205
SexAI	ACCWGGT	1 cut(s)	506
SfaNI	GCATC	1 cut(s)	710
Sfr274I	CTCGAG	2 cut(s)	50, 356
SlaI	CTCGAG	2 cut(s)	50, 356
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	3 cut(s)	50, 356, 614
SmoI	CTYRAG	3 cut(s)	50, 356, 614
SphI	GCATGC	1 cut(s)	335
Sse9I	AATT	4 cut(s)	259, 361, 459, 741
SseBI	AGGCCT	1 cut(s)	221
SsiI	CCGC	4 cut(s)	193, 241, 369, 548
SspMI	CTAG	3 cut(s)	168, 540, 692
StuI	AGGCCT	1 cut(s)	221
StyD4I	CCNGG	3 cut(s)	74, 131, 506
TaaI	ACNGT	2 cut(s)	587, 791
TaiI	ACGT	3 cut(s)	66, 345, 785
TaqI	TCGA	4 cut(s)	51, 213, 357, 785
TaqII	GACCGA	1 cut(s)	585
TasI	AATT	4 cut(s)	259, 361, 459, 741
TatI	WGTACW	1 cut(s)	345
TfiI	GAWTC	7 cut(s)	248, 254, 409, 452, 575, 709, 800
Tru1I	TTAA	1 cut(s)	615
Tru9I	TTAA	1 cut(s)	615
TseI	GCWGC	1 cut(s)	496
TspDTI	ATGAA	4 cut(s)	133, 504, 549, 765
Vha464I	CTTAAG	1 cut(s)	614
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	1 cut(s)	335
XhoI	CTCGAG	2 cut(s)	50, 356
XspI	CTAG	3 cut(s)	168, 540, 692
Zsp2I	ATGCAT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.