RchiOBHm_Chr2g0118141

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003644
Physical Location & Seq
Reverse (-)
30493997 .. 30494437
441 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49100

Sequence Viewer

Length: 249 bp
ATGGCAACTGTTTCTCGTGTTGGAAAATGGAGGAGAACCGTACTTTGTCTCAGCAGCAGCAGCAATGGCTCGTACTTAGAGGCTCTAGCCAAAGCCTCCGACGAAAAAGTCCCCAGCTTGCTTCTCTACAACTACCCTTGTTTCTCCGGCGCCTTCTCCGCTCTCTTCGGTCACCTCTTCCACTCTCGCCTCAACCTCCCTCTCCTCGCCCTCCCTTTTTCAGATCCCATCCAATCCCTCTCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.96

Weight (kDa)

9.18

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 107
AccB1I GGYRCC 1 cut(s) 149
AccBSI CCGCTC 1 cut(s) 161
AciI CCGC 1 cut(s) 159
AclWI GGATC 1 cut(s) 218
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 2 cut(s) 42, 74
AluBI AGCT 1 cut(s) 117
AluI AGCT 1 cut(s) 117
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 1 cut(s) 218
ApeKI GCWGC 3 cut(s) 54, 57, 60
AspLEI GCGC 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 164
BanI GGYRCC 1 cut(s) 149
BauI CACGAG 1 cut(s) 15
BbvI GCAGC 3 cut(s) 66, 69, 72
BccI CCATC 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 1 cut(s) 86
BfoI RGCGCY 1 cut(s) 153
BisI GCNGC 3 cut(s) 55, 58, 61
BlsI GCNGC 3 cut(s) 56, 59, 62
BmiI GGNNCC 1 cut(s) 151
BsaHI GRCGYC 1 cut(s) 150
Bse3DI GCAATG 1 cut(s) 70
BseGI GGATG 1 cut(s) 228
BseMI GCAATG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 64
BseRI GAGGAG 2 cut(s) 46, 194
BseXI GCAGC 3 cut(s) 66, 69, 72
BseYI CCCAGC 1 cut(s) 113
BshNI GGYRCC 1 cut(s) 149
BsiSI CCGG 1 cut(s) 147
BslFI GGGAC 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 53
BsmFI GGGAC 1 cut(s) 95
Bsp143I GATC 1 cut(s) 223
BspACI CCGC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 151
BspPI GGATC 1 cut(s) 218
BspT107I GGYRCC 1 cut(s) 149
BsrBI CCGCTC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 70
BssMI GATC 1 cut(s) 223
BssNI GRCGYC 1 cut(s) 150
BssSI CACGAG 1 cut(s) 15
Bst2BI CACGAG 1 cut(s) 15
Bst4CI ACNGT 2 cut(s) 10, 40
Bst6I CTCTTC 2 cut(s) 170, 182
BstACI GRCGYC 1 cut(s) 150
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 2 cut(s) 50, 76
BstEII GGTNACC 1 cut(s) 170
BstF5I GGATG 1 cut(s) 228
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 1 cut(s) 226
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 1 cut(s) 223
BstMWI GCNNNNNNNGC 3 cut(s) 60, 66, 158
BstPI GGTNACC 1 cut(s) 170
BstV1I GCAGC 3 cut(s) 66, 69, 72
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
BtsCI GGATG 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 119
CfoI GCGC 1 cut(s) 152
Csp6I GTAC 2 cut(s) 41, 73
CviJI RGCY 5 cut(s) 69, 83, 89, 95, 117
CviKI_1 RGCY 5 cut(s) 69, 83, 89, 95, 117
CviQI GTAC 2 cut(s) 41, 73
DdeI CTNAG 2 cut(s) 50, 76
DinI GGCGCC 1 cut(s) 151
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
DrdI GACNNNNNNGTC 1 cut(s) 107
DseDI GACNNNNNNGTC 1 cut(s) 107
Eam1104I CTCTTC 2 cut(s) 170, 182
EarI CTCTTC 2 cut(s) 170, 182
Eco91I GGTNACC 1 cut(s) 170
EcoO65I GGTNACC 1 cut(s) 170
EgeI GGCGCC 1 cut(s) 151
EheI GGCGCC 1 cut(s) 151
FaqI GGGAC 1 cut(s) 95
Fnu4HI GCNGC 3 cut(s) 55, 58, 61
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 3 cut(s) 55, 58, 61
FspBI CTAG 1 cut(s) 86
GlaI GCGC 1 cut(s) 151
GluI GCNGC 3 cut(s) 55, 58, 61
GsaI CCCAGC 1 cut(s) 117
HaeII RGCGCY 1 cut(s) 153
HapII CCGG 1 cut(s) 147
HhaI GCGC 1 cut(s) 152
Hin1I GRCGYC 1 cut(s) 150
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HpaII CCGG 1 cut(s) 147
HphI GGTGA 1 cut(s) 164
Hpy188I TCNGA 2 cut(s) 100, 223
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 2 cut(s) 10, 40
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 66, 158
HpyF3I CTNAG 2 cut(s) 50, 76
Hsp92I GRCGYC 1 cut(s) 150
HspAI GCGC 1 cut(s) 150
KasI GGCGCC 1 cut(s) 149
Kzo9I GATC 1 cut(s) 223
LpnPI CCDG 2 cut(s) 127, 160
Lsp1109I GCAGC 3 cut(s) 66, 69, 72
MaeI CTAG 1 cut(s) 86
MaeIII GTNAC 1 cut(s) 170
MalI GATC 1 cut(s) 225
MbiI CCGCTC 1 cut(s) 161
MboI GATC 1 cut(s) 223
MboII GAAGA 2 cut(s) 157, 169
MflI RGATCY 1 cut(s) 223
Mly113I GGCGCC 1 cut(s) 150
MmeI TCCRAC 1 cut(s) 123
MspI CCGG 1 cut(s) 147
MwoI GCNNNNNNNGC 3 cut(s) 60, 66, 158
NarI GGCGCC 1 cut(s) 150
NdeII GATC 1 cut(s) 223
NlaIV GGNNCC 1 cut(s) 151
NmuCI GTSAC 1 cut(s) 170
PkrI GCNGC 3 cut(s) 56, 59, 62
PluTI GGCGCC 1 cut(s) 153
PspEI GGTNACC 1 cut(s) 170
PspFI CCCAGC 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 151
PsuI RGATCY 1 cut(s) 223
RsaI GTAC 2 cut(s) 42, 74
RsaNI GTAC 2 cut(s) 41, 73
SatI GCNGC 3 cut(s) 55, 58, 61
Sau3AI GATC 1 cut(s) 223
SetI ASST 3 cut(s) 119, 177, 198
SfoI GGCGCC 1 cut(s) 151
SsiI CCGC 1 cut(s) 159
SspDI GGCGCC 1 cut(s) 149
SspMI CTAG 1 cut(s) 86
TaaI ACNGT 2 cut(s) 10, 40
TaqII GACCGA 1 cut(s) 158
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 3 cut(s) 54, 57, 60
Tsp45I GTSAC 1 cut(s) 170
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.