Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003644

Physical Location & Seq

Genomic Coordinates Reverse (-)

21693659 .. 21709006

Gene Structure 15348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00234990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCACGGTTTCGCCGGAAAATTTCCGAATCCTGAGGCTCCGTTCAACTTCTCCGATGATGGTGGATCCATTGATCTAAACTTTGGTTCCATTGGTTCCACTGGTGCTGATGGATCTATCGATCTAGCTTTTGGCACTACGGAACTGCTACAAAAGCTGCTACAAAATCACTACGACACGCCACAAAGGCTGCCACACAAGCAACTTGCTACACAAGCTGCCTATCACATAAGCACTGCTACAAAAGCTGCTACAAAATCACTACGCGCGCCACAAAGGCTGCCACGAGCACAAGGAATGGATGCAAGTTCTTTAGAAGTTGAGGACAGGGATCATGTGGAAATGGTGCTTAAGTACATCGAGGAGGATGGAAATCTCCGTCGTCGGAGCCTCTTGGATATTAAACGCCCTAATTATTGGACTTTTAGTCAATCGCTCAAAAATTTGCAATTCGCAGCTGCATATTCTCGGGTTGTTTCCGACTATGTGAGGCATTTTCTTCATCAGCACACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

19.19

Weight (kDa)

7.11

Isoelectric Point (pI)

57.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09580 AT5G09580
fragaria_vesca	FvH4_1g23320 FvH4_1g23320
malus_domestica	MD10G1056400.v1.1
prunus_persica	Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1
pyrus_communis	pycom10g04330 pycom10g04340
rosa_chinensis	RchiOBHm_Chr2g0118131 RchiOBHm_Chr2g0118141 RchiOBHm_Chr2g0118161
rosa_laevigata	RLG00000018394 RLG00000018395 RLG00000018401
rosa_multiflora	Rmu_sc0001618.1_g000003 Rmu_sc0001618.1_g000008 Rmu_sc0001618.1_g000012 Rmu_sc0009463.1_g000001 Rmu_sc0009463.1_g000017
rosa_roxburghii	Rroxscaffold_2G00125850 Rroxscaffold_2G00125900 Rroxscaffold_3G00234990 Rroxscaffold_4G00309060
rosa_rugosa	Rorug02G0216300 Rorug02G0217100
rosa_samantha	Rh2AG273200 Rh2BG285500 Rh2CG410200 Rh6DG346000 Rh7BG104700
rosa_wichuraiana	Rw2G021570 Rw2G021590 Rw2G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	267, 269
AclWI	GGATC	4 cut(s)	60, 73, 121, 339
AcsI	RAATTY	2 cut(s)	20, 442
AcvI	CACGTG	1 cut(s)	513
AfaI	GTAC	1 cut(s)	356
AflII	CTTAAG	1 cut(s)	350
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	1 cut(s)	46
AhdI	GACNNNNNGTC	1 cut(s)	426
AluBI	AGCT	5 cut(s)	128, 157, 218, 248, 458
AluI	AGCT	5 cut(s)	128, 157, 218, 248, 458
Alw21I	GWGCWC	1 cut(s)	292
AlwI	GGATC	4 cut(s)	60, 73, 121, 339
Ama87I	CYCGRG	1 cut(s)	468
ApeKI	GCWGC	7 cut(s)	157, 190, 218, 248, 280, 455, 458
ApoI	RAATTY	2 cut(s)	20, 442
AspLEI	GCGC	2 cut(s)	269, 271
AvaI	CYCGRG	1 cut(s)	468
AxyI	CCTNAGG	1 cut(s)	33
BamHI	GGATCC	1 cut(s)	65
BauI	CACGAG	1 cut(s)	285
BbrPI	CACGTG	1 cut(s)	513
Bbv12I	GWGCWC	1 cut(s)	292
BbvI	GCAGC	7 cut(s)	144, 177, 205, 235, 267, 445, 467
BccI	CCATC	3 cut(s)	53, 104, 362
BfaI	CTAG	1 cut(s)	125
BfrI	CTTAAG	1 cut(s)	350
BglI	GCCNNNNNGGC	2 cut(s)	187, 277
BisI	GCNGC	7 cut(s)	158, 191, 219, 249, 281, 456, 459
BlsI	GCNGC	7 cut(s)	159, 192, 220, 250, 282, 457, 460
BmeRI	GACNNNNNGTC	1 cut(s)	426
BmeT110I	CYCGRG	1 cut(s)	468
BmiI	GGNNCC	5 cut(s)	39, 67, 88, 97, 389
BmsI	GCATC	1 cut(s)	292
Bsa29I	ATCGAT	1 cut(s)	120
BsaAI	YACGTR	1 cut(s)	513
BsaBI	GATNNNNATC	1 cut(s)	372
Bse1I	ACTGG	1 cut(s)	106
Bse21I	CCTNAGG	1 cut(s)	33
Bse8I	GATNNNNATC	1 cut(s)	372
BseCI	ATCGAT	1 cut(s)	120
BseGI	GGATG	2 cut(s)	307, 373
BseJI	GATNNNNATC	1 cut(s)	372
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	106
BsePI	GCGCGC	1 cut(s)	267
BseRI	GAGGAG	1 cut(s)	377
BseXI	GCAGC	7 cut(s)	144, 177, 205, 235, 267, 445, 467
Bsh1236I	CGCG	2 cut(s)	267, 269
BshVI	ATCGAT	1 cut(s)	120
BsiHKAI	GWGCWC	1 cut(s)	292
BsiHKCI	CYCGRG	1 cut(s)	468
BsiSI	CCGG	1 cut(s)	15
BsoBI	CYCGRG	1 cut(s)	468
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	5 cut(s)	65, 73, 113, 121, 331
BspCNI	CTCAG	1 cut(s)	25
BspDI	ATCGAT	1 cut(s)	120
BspFNI	CGCG	2 cut(s)	267, 269
BspLI	GGNNCC	5 cut(s)	39, 67, 88, 97, 389
BspPI	GGATC	4 cut(s)	60, 73, 121, 339
BspTI	CTTAAG	1 cut(s)	350
BsrI	ACTGG	1 cut(s)	106
BssHII	GCGCGC	1 cut(s)	267
BssMI	GATC	5 cut(s)	65, 73, 113, 121, 331
BssSI	CACGAG	1 cut(s)	285
Bst2BI	CACGAG	1 cut(s)	285
Bst4CI	ACNGT	1 cut(s)	8
BstAFI	CTTAAG	1 cut(s)	350
BstBAI	YACGTR	1 cut(s)	513
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	1 cut(s)	33
BstF5I	GGATG	2 cut(s)	307, 373
BstFNI	CGCG	2 cut(s)	267, 269
BstHHI	GCGC	2 cut(s)	269, 271
BstKTI	GATC	5 cut(s)	68, 76, 116, 124, 334
BstMBI	GATC	5 cut(s)	65, 73, 113, 121, 331
BstMWI	GCNNNNNNNGC	6 cut(s)	154, 187, 199, 215, 245, 277
BstUI	CGCG	2 cut(s)	267, 269
BstV1I	GCAGC	7 cut(s)	144, 177, 205, 235, 267, 445, 467
BstX2I	RGATCY	2 cut(s)	65, 113
BstYI	RGATCY	2 cut(s)	65, 113
Bsu15I	ATCGAT	1 cut(s)	120
Bsu36I	CCTNAGG	1 cut(s)	33
BsuTUI	ATCGAT	1 cut(s)	120
BtsCI	GGATG	2 cut(s)	307, 373
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	2 cut(s)	99, 234
Cac8I	GCNNGC	1 cut(s)	269
CfoI	GCGC	2 cut(s)	269, 271
ClaI	ATCGAT	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	1 cut(s)	335
CviJI	RGCY	9 cut(s)	38, 128, 157, 190, 218, 248, 280, 390, 458
CviKI_1	RGCY	9 cut(s)	38, 128, 157, 190, 218, 248, 280, 390, 458
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	5 cut(s)	67, 75, 115, 123, 333
DpnII	GATC	5 cut(s)	65, 73, 113, 121, 331
DriI	GACNNNNNGTC	1 cut(s)	426
Eam1105I	GACNNNNNGTC	1 cut(s)	426
Eco72I	CACGTG	1 cut(s)	513
Eco81I	CCTNAGG	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	468
FaeI	CATG	1 cut(s)	338
FaiI	YATR	4 cut(s)	230, 336, 463, 486
FatI	CATG	1 cut(s)	334
Fnu4HI	GCNGC	7 cut(s)	158, 191, 219, 249, 281, 456, 459
FokI	GGATG	2 cut(s)	314, 380
Fsp4HI	GCNGC	7 cut(s)	158, 191, 219, 249, 281, 456, 459
FspBI	CTAG	1 cut(s)	125
GlaI	GCGC	2 cut(s)	268, 270
GluI	GCNGC	7 cut(s)	158, 191, 219, 249, 281, 456, 459
HapII	CCGG	1 cut(s)	15
HhaI	GCGC	2 cut(s)	269, 271
Hin1II	CATG	1 cut(s)	338
Hin6I	GCGC	2 cut(s)	267, 269
HinP1I	GCGC	2 cut(s)	267, 269
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	15
Hpy188I	TCNGA	4 cut(s)	27, 55, 387, 481
Hpy188III	TCNNGA	1 cut(s)	32
Hpy99I	CGWCG	2 cut(s)	384, 387
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4IV	ACGT	1 cut(s)	512
HpyCH4V	TGCA	4 cut(s)	4, 305, 448, 461
HpyF10VI	GCNNNNNNNGC	6 cut(s)	154, 187, 199, 215, 245, 277
HpyF3I	CTNAG	1 cut(s)	33
HpySE526I	ACGT	1 cut(s)	512
Hsp92II	CATG	1 cut(s)	338
HspAI	GCGC	2 cut(s)	267, 269
Kzo9I	GATC	5 cut(s)	65, 73, 113, 121, 331
LmnI	GCTCC	2 cut(s)	43, 387
LpnPI	CCDG	4 cut(s)	28, 45, 87, 313
Lsp1109I	GCAGC	7 cut(s)	144, 177, 205, 235, 267, 445, 467
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	1 cut(s)	512
MalI	GATC	5 cut(s)	67, 75, 115, 123, 333
MboI	GATC	5 cut(s)	65, 73, 113, 121, 331
MboII	GAAGA	1 cut(s)	491
MflI	RGATCY	2 cut(s)	65, 113
MhlI	GDGCHC	1 cut(s)	292
MluCI	AATT	4 cut(s)	20, 412, 442, 449
MmeI	TCCRAC	2 cut(s)	365, 504
MnlI	CCTC	6 cut(s)	28, 316, 355, 358, 401, 483
MseI	TTAA	2 cut(s)	351, 402
MspA1I	CMGCKG	1 cut(s)	458
MspCI	CTTAAG	1 cut(s)	350
MspI	CCGG	1 cut(s)	15
MvnI	CGCG	2 cut(s)	267, 269
MwoI	GCNNNNNNNGC	6 cut(s)	154, 187, 199, 215, 245, 277
NdeII	GATC	5 cut(s)	65, 73, 113, 121, 331
NlaIII	CATG	1 cut(s)	338
NlaIV	GGNNCC	5 cut(s)	39, 67, 88, 97, 389
PauI	GCGCGC	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	7 cut(s)	159, 192, 220, 250, 282, 457, 460
PmaCI	CACGTG	1 cut(s)	513
PmlI	CACGTG	1 cut(s)	513
Ppu21I	YACGTR	1 cut(s)	513
PspCI	CACGTG	1 cut(s)	513
PspN4I	GGNNCC	5 cut(s)	39, 67, 88, 97, 389
PsuI	RGATCY	2 cut(s)	65, 113
PteI	GCGCGC	1 cut(s)	267
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SaqAI	TTAA	2 cut(s)	351, 402
SatI	GCNGC	7 cut(s)	158, 191, 219, 249, 281, 456, 459
Sau3AI	GATC	5 cut(s)	65, 73, 113, 121, 331
SduI	GDGCHC	1 cut(s)	292
SetI	ASST	6 cut(s)	130, 159, 220, 250, 460, 515
SfaNI	GCATC	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	4 cut(s)	20, 412, 442, 449
SspMI	CTAG	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	8
TaiI	ACGT	1 cut(s)	515
TaqI	TCGA	2 cut(s)	120, 360
TasI	AATT	4 cut(s)	20, 412, 442, 449
TatI	WGTACW	1 cut(s)	354
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	2 cut(s)	351, 402
Tru9I	TTAA	2 cut(s)	351, 402
TscAI	CASTG	2 cut(s)	106, 241
TseI	GCWGC	7 cut(s)	157, 190, 218, 248, 280, 455, 458
TspDTI	ATGAA	1 cut(s)	491
TspGWI	ACGGA	3 cut(s)	30, 155, 368
TspRI	CASTG	2 cut(s)	106, 241
Vha464I	CTTAAG	1 cut(s)	350
XapI	RAATTY	2 cut(s)	20, 442
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.