Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001618.1

Orthogroup ID

OG0003644

Physical Location & Seq

Genomic Coordinates Forward (+)

4493 .. 6070

Gene Structure 1578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001618.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atggctctttcttccgttggaaaatggaggagaaccatagcagtctcagcagcagtggctcctcttcctctatcacatacccgaagcttccgatcagacgccgccttagaagctctatccaaagcctccgacgaaaaagtcccctacttgcttctctacaactacccttctttctccggcgccttctccgctctctttgctcacctcttccactctcgccttaacctaccactcctctctctccctttctctgccgtcgaacccttcagggtcgatgatttgtgtactcgaggaccggagaggtgctacttccttgattttcttggccccaaaggatttgcggtcgagtttgcaaggagagcttcgtgcgaggtaattgctttcgatcatcgaaaatctgtactaccggagatgccctccgatgaggattgcccggacaatctcacatttcgagtgaatactgaaaagagtagctctagtgctgtgtatgattacttctctgctaagcttgctgatgttgaatgtcataatggaatgggtgcaagtttgttacaagttgaggacagggatcgtgtggagatggtgcttaagtacattgaggatggagatctccgtcgctggagcttaccggatattagggcgtttaatattggacttagtgaatggcgctcaaagttgaattgctttactaatccatacatgtgtgaacagttactggagataagtgccacggatgttattgctaagggaaagtcatatatatctgctcgccaaaaggctgcaaataagttactggacaaagctctgaaaataaggttgggcagaggattttacggggagtgtctgggagtgagagctgatgggaattccgagttaagtgatgaaattggcaagcaacttagtgtaaaaagtgccgctgctggcctaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

310

Amino Acids

34.46

Weight (kDa)

7.55

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09580 AT5G09580
fragaria_vesca	FvH4_1g23320 FvH4_1g23320
malus_domestica	MD10G1056400.v1.1
prunus_persica	Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1
pyrus_communis	pycom10g04330 pycom10g04340
rosa_chinensis	RchiOBHm_Chr2g0118131 RchiOBHm_Chr2g0118141 RchiOBHm_Chr2g0118161
rosa_laevigata	RLG00000018394 RLG00000018395 RLG00000018401
rosa_multiflora	Rmu_sc0001618.1_g000003 Rmu_sc0001618.1_g000008 Rmu_sc0001618.1_g000012 Rmu_sc0009463.1_g000001 Rmu_sc0009463.1_g000017
rosa_roxburghii	Rroxscaffold_2G00125850 Rroxscaffold_2G00125900 Rroxscaffold_3G00234990 Rroxscaffold_4G00309060
rosa_rugosa	Rorug02G0216300 Rorug02G0217100
rosa_samantha	Rh2AG273200 Rh2BG285500 Rh2CG410200 Rh6DG346000 Rh7BG104700
rosa_wichuraiana	Rw2G021570 Rw2G021590 Rw2G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	179
AccBSI	CCGCTC	1 cut(s)	191
AciI	CCGC	4 cut(s)	102, 189, 341, 915
AclWI	GGATC	1 cut(s)	576
AcsI	RAATTY	1 cut(s)	865
AcuI	CTGAAG	1 cut(s)	250
AcyI	GRCGYC	2 cut(s)	99, 180
AfaI	GTAC	3 cut(s)	286, 402, 593
AflII	CTTAAG	1 cut(s)	587
AflIII	ACRYGT	1 cut(s)	699
AgsI	TTSAA	2 cut(s)	521, 679
AjuI	GAANNNNNNNTTGG	2 cut(s)	800, 832
AluBI	AGCT	8 cut(s)	87, 113, 362, 474, 508, 624, 803, 857
AluI	AGCT	8 cut(s)	87, 113, 362, 474, 508, 624, 803, 857
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	1 cut(s)	576
AlwNI	CAGNNNCTG	1 cut(s)	715
Ama87I	CYCGRG	1 cut(s)	288
AoxI	GGCC	2 cut(s)	325, 922
ApeKI	GCWGC	3 cut(s)	50, 779, 917
ApoI	RAATTY	1 cut(s)	865
AspLEI	GCGC	2 cut(s)	182, 669
AspS9I	GGNCC	2 cut(s)	293, 326
AsuC2I	CCSGG	1 cut(s)	434
AsuHPI	GGTGA	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	288
AvaII	GGWCC	1 cut(s)	293
AxyI	CCTNAGG	1 cut(s)	926
BanI	GGYRCC	1 cut(s)	179
BarI	GAAGNNNNNNTAC	2 cut(s)	479, 511
BbvI	GCAGC	3 cut(s)	62, 766, 904
BccI	CCATC	3 cut(s)	574, 596, 854
BceAI	ACGGC	1 cut(s)	239
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BcnI	CCSGG	1 cut(s)	434
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	1 cut(s)	477
BfoI	RGCGCY	2 cut(s)	183, 670
BfrI	CTTAAG	1 cut(s)	587
BglII	AGATCT	1 cut(s)	607
BisI	GCNGC	5 cut(s)	51, 102, 780, 915, 918
BlpI	GCTNAGC	1 cut(s)	504
BlsI	GCNGC	5 cut(s)	52, 103, 781, 916, 919
Bme1390I	CCNGG	1 cut(s)	434
Bme18I	GGWCC	1 cut(s)	293
BmeT110I	CYCGRG	1 cut(s)	288
BmgT120I	GGNCC	2 cut(s)	293, 326
BmiI	GGNNCC	3 cut(s)	60, 181, 328
BmrFI	CCNGG	1 cut(s)	434
BmsI	GCATC	1 cut(s)	402
BplI	GAGNNNNNCTC	2 cut(s)	401, 433
BpmI	CTGGAG	2 cut(s)	640, 737
Bpu10I	CCTNAGC	1 cut(s)	744
Bpu1102I	GCTNAGC	1 cut(s)	504
BpuMI	CCSGG	1 cut(s)	434
BsaBI	GATNNNNATC	1 cut(s)	606
BsaHI	GRCGYC	2 cut(s)	99, 180
BsaJI	CCNNGG	1 cut(s)	729
BsaWI	WCCGGW	3 cut(s)	295, 406, 628
Bse1I	ACTGG	2 cut(s)	720, 798
Bse21I	CCTNAGG	1 cut(s)	926
Bse8I	GATNNNNATC	1 cut(s)	606
BseDI	CCNNGG	1 cut(s)	729
BseGI	GGATG	2 cut(s)	607, 739
BseJI	GATNNNNATC	1 cut(s)	606
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	2 cut(s)	720, 798
BseRI	GAGGAG	3 cut(s)	43, 51, 224
BseXI	GCAGC	3 cut(s)	62, 766, 904
Bsh1285I	CGRYCG	1 cut(s)	345
BshFI	GGCC	2 cut(s)	327, 924
BshNI	GGYRCC	1 cut(s)	179
BsiEI	CGRYCG	1 cut(s)	345
BsiHKCI	CYCGRG	1 cut(s)	288
BsiSI	CCGG	5 cut(s)	177, 296, 407, 434, 629
BslFI	GGGAC	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	2 cut(s)	327, 924
BsoBI	CYCGRG	1 cut(s)	288
Bsp143I	GATC	4 cut(s)	92, 385, 568, 607
Bsp1720I	GCTNAGC	1 cut(s)	504
BspACI	CCGC	4 cut(s)	102, 189, 341, 915
BspANI	GGCC	2 cut(s)	327, 924
BspCNI	CTCAG	1 cut(s)	59
BspLI	GGNNCC	3 cut(s)	60, 181, 328
BspPI	GGATC	1 cut(s)	576
BspT107I	GGYRCC	1 cut(s)	179
BspTI	CTTAAG	1 cut(s)	587
BsrBI	CCGCTC	1 cut(s)	191
BsrI	ACTGG	2 cut(s)	720, 798
BssECI	CCNNGG	1 cut(s)	729
BssMI	GATC	4 cut(s)	92, 385, 568, 607
BssNI	GRCGYC	2 cut(s)	99, 180
Bst4CI	ACNGT	1 cut(s)	711
Bst6I	CTCTTC	2 cut(s)	69, 212
BstACI	GRCGYC	2 cut(s)	99, 180
BstAFI	CTTAAG	1 cut(s)	587
BstC8I	GCNNGC	4 cut(s)	510, 769, 893, 922
BstDEI	CTNAG	7 cut(s)	46, 106, 504, 656, 744, 899, 926
BstDSI	CCRYGG	1 cut(s)	729
BstF5I	GGATG	2 cut(s)	607, 739
BstH2I	RGCGCY	2 cut(s)	183, 670
BstHHI	GCGC	2 cut(s)	182, 669
BstKTI	GATC	4 cut(s)	95, 388, 571, 610
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	4 cut(s)	92, 385, 568, 607
BstMCI	CGRYCG	1 cut(s)	345
BstMWI	GCNNNNNNNGC	7 cut(s)	47, 56, 110, 188, 197, 359, 509
BstNSI	RCATGY	1 cut(s)	703
BstSCI	CCNGG	1 cut(s)	432
BstV1I	GCAGC	3 cut(s)	62, 766, 904
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
Bsu36I	CCTNAGG	1 cut(s)	926
BsuRI	GGCC	2 cut(s)	327, 924
BtgI	CCRYGG	1 cut(s)	729
BtsCI	GGATG	2 cut(s)	607, 739
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	4 cut(s)	510, 769, 893, 922
CaiI	CAGNNNCTG	1 cut(s)	715
CfoI	GCGC	2 cut(s)	182, 669
Cfr13I	GGNCC	2 cut(s)	293, 326
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	3 cut(s)	285, 401, 592
CviAII	CATG	1 cut(s)	700
CviQI	GTAC	3 cut(s)	285, 401, 592
DdeI	CTNAG	7 cut(s)	46, 106, 504, 656, 744, 899, 926
DinI	GGCGCC	1 cut(s)	181
DpnI	GATC	4 cut(s)	94, 387, 570, 609
DpnII	GATC	4 cut(s)	92, 385, 568, 607
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
Eam1104I	CTCTTC	2 cut(s)	69, 212
EarI	CTCTTC	2 cut(s)	69, 212
Eco47I	GGWCC	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	250
Eco81I	CCTNAGG	1 cut(s)	926
Eco88I	CYCGRG	1 cut(s)	288
EcoRI	GAATTC	1 cut(s)	865
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
FaeI	CATG	1 cut(s)	703
FaiI	YATR	9 cut(s)	38, 78, 489, 528, 697, 701, 757, 759, 761
FalI	AAGNNNNNCTT	2 cut(s)	346, 378
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	1 cut(s)	699
Fnu4HI	GCNGC	5 cut(s)	51, 102, 780, 915, 918
FokI	GGATG	2 cut(s)	614, 746
Fsp4HI	GCNGC	5 cut(s)	51, 102, 780, 915, 918
FspBI	CTAG	1 cut(s)	477
GlaI	GCGC	2 cut(s)	181, 668
GluI	GCNGC	5 cut(s)	51, 102, 780, 915, 918
GsuI	CTGGAG	2 cut(s)	640, 737
HaeII	RGCGCY	2 cut(s)	183, 670
HaeIII	GGCC	2 cut(s)	327, 924
HapII	CCGG	5 cut(s)	177, 296, 407, 434, 629
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	2 cut(s)	182, 669
Hin1I	GRCGYC	2 cut(s)	99, 180
Hin1II	CATG	1 cut(s)	703
Hin6I	GCGC	2 cut(s)	180, 667
HinP1I	GCGC	2 cut(s)	180, 667
HindIII	AAGCTT	2 cut(s)	85, 506
HpaII	CCGG	5 cut(s)	177, 296, 407, 434, 629
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	2 cut(s)	285, 707
Hpy188I	TCNGA	6 cut(s)	92, 97, 130, 421, 807, 871
Hpy8I	GTNNAC	2 cut(s)	285, 707
Hpy99I	CGWCG	3 cut(s)	134, 260, 618
HpyAV	CCTTC	3 cut(s)	177, 193, 274
HpyCH4III	ACNGT	1 cut(s)	711
HpyCH4V	TGCA	3 cut(s)	353, 542, 782
HpyF10VI	GCNNNNNNNGC	7 cut(s)	47, 56, 110, 188, 197, 359, 509
HpyF3I	CTNAG	7 cut(s)	46, 106, 504, 656, 744, 899, 926
Hsp92I	GRCGYC	2 cut(s)	99, 180
Hsp92II	CATG	1 cut(s)	703
HspAI	GCGC	2 cut(s)	180, 667
KasI	GGCGCC	1 cut(s)	179
Kzo9I	GATC	4 cut(s)	92, 385, 568, 607
LmnI	GCTCC	2 cut(s)	64, 621
Lsp1109I	GCAGC	3 cut(s)	62, 766, 904
LweI	GCATC	1 cut(s)	402
MaeI	CTAG	1 cut(s)	477
MaeIII	GTNAC	3 cut(s)	549, 711, 789
MalI	GATC	4 cut(s)	94, 387, 570, 609
MbiI	CCGCTC	1 cut(s)	191
MboI	GATC	4 cut(s)	92, 385, 568, 607
MboII	GAAGA	3 cut(s)	3, 56, 199
MflI	RGATCY	1 cut(s)	607
MluCI	AATT	4 cut(s)	375, 679, 865, 885
Mly113I	GGCGCC	1 cut(s)	180
MmeI	TCCRAC	1 cut(s)	153
MseI	TTAA	4 cut(s)	222, 588, 645, 875
MslI	CAYNNNNRTG	1 cut(s)	700
MspA1I	CMGCKG	1 cut(s)	917
MspCI	CTTAAG	1 cut(s)	587
MspI	CCGG	5 cut(s)	177, 296, 407, 434, 629
MspR9I	CCNGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	7 cut(s)	47, 56, 110, 188, 197, 359, 509
NarI	GGCGCC	1 cut(s)	180
NciI	CCSGG	1 cut(s)	434
NdeII	GATC	4 cut(s)	92, 385, 568, 607
NlaIII	CATG	1 cut(s)	703
NlaIV	GGNNCC	3 cut(s)	60, 181, 328
NspI	RCATGY	1 cut(s)	703
PaeR7I	CTCGAG	1 cut(s)	288
PciI	ACATGT	1 cut(s)	699
PkrI	GCNGC	5 cut(s)	52, 103, 781, 916, 919
PluTI	GGCGCC	1 cut(s)	183
PscI	ACATGT	1 cut(s)	699
PspN4I	GGNNCC	3 cut(s)	60, 181, 328
PspPI	GGNCC	2 cut(s)	293, 326
PspXI	VCTCGAGB	1 cut(s)	288
PstNI	CAGNNNCTG	1 cut(s)	715
PsuI	RGATCY	1 cut(s)	607
RsaI	GTAC	3 cut(s)	286, 402, 593
RsaNI	GTAC	3 cut(s)	285, 401, 592
RseI	CAYNNNNRTG	1 cut(s)	700
SaqAI	TTAA	4 cut(s)	222, 588, 645, 875
SatI	GCNGC	5 cut(s)	51, 102, 780, 915, 918
Sau3AI	GATC	4 cut(s)	92, 385, 568, 607
Sau96I	GGNCC	2 cut(s)	293, 326
ScrFI	CCNGG	1 cut(s)	434
SfaNI	GCATC	1 cut(s)	402
SfoI	GGCGCC	1 cut(s)	181
Sfr274I	CTCGAG	1 cut(s)	288
SinI	GGWCC	1 cut(s)	293
SlaI	CTCGAG	1 cut(s)	288
SmiMI	CAYNNNNRTG	1 cut(s)	700
SmlI	CTYRAG	2 cut(s)	288, 587
SmoI	CTYRAG	2 cut(s)	288, 587
Sse9I	AATT	4 cut(s)	375, 679, 865, 885
SsiI	CCGC	4 cut(s)	102, 189, 341, 915
SspDI	GGCGCC	1 cut(s)	179
SspI	AATATT	1 cut(s)	649
SspMI	CTAG	1 cut(s)	477
StyD4I	CCNGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	711
TaqI	TCGA	7 cut(s)	258, 273, 289, 345, 384, 391, 451
TasI	AATT	4 cut(s)	375, 679, 865, 885
TatI	WGTACW	3 cut(s)	284, 400, 591
TauI	GCSGC	2 cut(s)	104, 917
Tru1I	TTAA	4 cut(s)	222, 588, 645, 875
Tru9I	TTAA	4 cut(s)	222, 588, 645, 875
TscAI	CASTG	1 cut(s)	60
TseI	GCWGC	3 cut(s)	50, 779, 917
TspDTI	ATGAA	1 cut(s)	897
TspGWI	ACGGA	3 cut(s)	4, 602, 746
TspRI	CASTG	1 cut(s)	60
Vha464I	CTTAAG	1 cut(s)	587
VpaK11BI	GGWCC	1 cut(s)	293
XapI	RAATTY	1 cut(s)	865
XceI	RCATGY	1 cut(s)	703
XhoI	CTCGAG	1 cut(s)	288
XspI	CTAG	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.