Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003644

Physical Location & Seq

Genomic Coordinates Reverse (-)

29222208 .. 29225256

Gene Structure 3049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018395

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCTCCTCGAAGCTTCCGATCAGACGCCGCCTTAGAAGCTCTTTCCAAAGCCTCCGATGAAAAAGTCCCCAACTTGCTTCTCTACAACTACCCTTGTTTCTCCGGCGCCTTCTCCGCTCTCTTCGCTCACCTCTACCACTCTCGCCTCAACCTCCCTCTCCTCTCTCTCCCTTTCTCCGCCGTCGAACCCTTCAGGGTCGATGATTTGTGTACTCGAGGACTGGAGAGGTGCTATTTCCTTGATTTTCTTGCCCCCAGAGGATTTGCGGTCGAGTTTGCAAGGAGAGCTTCGTGCGAGGTGATTGCTTTCAATCATCGGAAATCTGTACTTTCCGAGTTACTGGAGATAAGTGCTACGGATGTTATTGCTAAGGGAAAGTCATATATATCTGCTCGCCAAAAGGCTGCAAATAAGTTACTGGACAAAGCTCTGAAAATAAGCTGCTACTTTCTTATGATTCTTGTACTCGATATTGTGAGAGCTGATGGGAATTCTGAGTTAAGTGATGAAATTGGCAAGCAACTTAGTGTTAAAAGTGCCGCTGCTGGTCTAAGGCCTATAGGAGCTGTTATATTCATGCAACGGAGAAACCTCAAAATGTGCTTAAGGAGTACTGATACTGCGACTGATACCTGTGAAGTTGCAAAGGCATATGGAGGAGGGGGCACCCCAAGTTCGAGTTCCTTTATTATAAGGATGGATGAGTACAATCAGTGGGTTTCAGGAAACTCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

27.13

Weight (kDa)

8.95

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09580 AT5G09580
fragaria_vesca	FvH4_1g23320 FvH4_1g23320
malus_domestica	MD10G1056400.v1.1
prunus_persica	Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1
pyrus_communis	pycom10g04330 pycom10g04340
rosa_chinensis	RchiOBHm_Chr2g0118131 RchiOBHm_Chr2g0118141 RchiOBHm_Chr2g0118161
rosa_laevigata	RLG00000018394 RLG00000018395 RLG00000018401
rosa_multiflora	Rmu_sc0001618.1_g000003 Rmu_sc0001618.1_g000008 Rmu_sc0001618.1_g000012 Rmu_sc0009463.1_g000001 Rmu_sc0009463.1_g000017
rosa_roxburghii	Rroxscaffold_2G00125850 Rroxscaffold_2G00125900 Rroxscaffold_3G00234990 Rroxscaffold_4G00309060
rosa_rugosa	Rorug02G0216300 Rorug02G0217100
rosa_samantha	Rh2AG273200 Rh2BG285500 Rh2CG410200 Rh6DG346000 Rh7BG104700
rosa_wichuraiana	Rw2G021570 Rw2G021590 Rw2G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	695
AccB1I	GGYRCC	2 cut(s)	107, 668
AccBSI	CCGCTC	1 cut(s)	119
AciI	CCGC	5 cut(s)	30, 117, 180, 269, 543
AcsI	RAATTY	1 cut(s)	493
AcuI	CTGAAG	1 cut(s)	178
AcyI	GRCGYC	2 cut(s)	27, 108
AfaI	GTAC	5 cut(s)	214, 330, 468, 616, 710
AflII	CTTAAG	1 cut(s)	607
AgsI	TTSAA	1 cut(s)	313
AjuI	GAANNNNNNNTTGG	2 cut(s)	667, 699
AluBI	AGCT	7 cut(s)	15, 41, 290, 431, 444, 485, 569
AluI	AGCT	7 cut(s)	15, 41, 290, 431, 444, 485, 569
Ama87I	CYCGRG	1 cut(s)	216
AoxI	GGCC	1 cut(s)	557
ApeKI	GCWGC	3 cut(s)	407, 444, 545
ApoI	RAATTY	1 cut(s)	493
AspLEI	GCGC	1 cut(s)	110
AsuHPI	GGTGA	2 cut(s)	122, 313
AvaI	CYCGRG	1 cut(s)	216
BaeGI	GKGCMC	1 cut(s)	671
BanI	GGYRCC	2 cut(s)	107, 668
BbvI	GCAGC	3 cut(s)	394, 431, 532
BccI	CCATC	2 cut(s)	482, 694
BceAI	ACGGC	1 cut(s)	167
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BfmI	CTRYAG	1 cut(s)	561
BfoI	RGCGCY	1 cut(s)	111
BfrI	CTTAAG	1 cut(s)	607
BisI	GCNGC	5 cut(s)	30, 408, 445, 543, 546
BlsI	GCNGC	5 cut(s)	31, 409, 446, 544, 547
BmcAI	AGTACT	1 cut(s)	616
BmeT110I	CYCGRG	1 cut(s)	216
BmiI	GGNNCC	3 cut(s)	6, 109, 670
BpmI	CTGGAG	2 cut(s)	245, 365
Bpu10I	CCTNAGC	1 cut(s)	372
BpuEI	CTTGAG	1 cut(s)	718
BsaHI	GRCGYC	2 cut(s)	27, 108
Bse1I	ACTGG	3 cut(s)	228, 348, 426
BseGI	GGATG	3 cut(s)	367, 705, 709
BseMII	CTCAG	1 cut(s)	489
BseNI	ACTGG	3 cut(s)	228, 348, 426
BseRI	GAGGAG	2 cut(s)	152, 675
BseSI	GKGCMC	1 cut(s)	671
BseXI	GCAGC	3 cut(s)	394, 431, 532
Bsh1285I	CGRYCG	1 cut(s)	273
BshFI	GGCC	1 cut(s)	559
BshNI	GGYRCC	2 cut(s)	107, 668
BsiEI	CGRYCG	1 cut(s)	273
BsiHKCI	CYCGRG	1 cut(s)	216
BsiSI	CCGG	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	559
BsoBI	CYCGRG	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	671
Bsp143I	GATC	1 cut(s)	20
BspACI	CCGC	5 cut(s)	30, 117, 180, 269, 543
BspANI	GGCC	1 cut(s)	559
BspCNI	CTCAG	1 cut(s)	490
BspLI	GGNNCC	3 cut(s)	6, 109, 670
BspT107I	GGYRCC	2 cut(s)	107, 668
BspTI	CTTAAG	1 cut(s)	607
BsrBI	CCGCTC	1 cut(s)	119
BsrI	ACTGG	3 cut(s)	228, 348, 426
BssMI	GATC	1 cut(s)	20
BssNI	GRCGYC	2 cut(s)	27, 108
Bst6I	CTCTTC	1 cut(s)	128
BstACI	GRCGYC	2 cut(s)	27, 108
BstAFI	CTTAAG	1 cut(s)	607
BstC8I	GCNNGC	2 cut(s)	397, 521
BstDEI	CTNAG	5 cut(s)	34, 372, 498, 527, 554
BstF5I	GGATG	3 cut(s)	367, 705, 709
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	20
BstMCI	CGRYCG	1 cut(s)	273
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 116, 125, 287
BstSFI	CTRYAG	1 cut(s)	561
BstSLI	GKGCMC	1 cut(s)	671
BstV1I	GCAGC	3 cut(s)	394, 431, 532
BsuRI	GGCC	1 cut(s)	559
BtsCI	GGATG	3 cut(s)	367, 705, 709
BtsIMutI	CAGTG	1 cut(s)	722
Cac8I	GCNNGC	2 cut(s)	397, 521
CfoI	GCGC	1 cut(s)	110
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	5 cut(s)	213, 329, 467, 615, 709
CviAII	CATG	1 cut(s)	580
CviQI	GTAC	5 cut(s)	213, 329, 467, 615, 709
DdeI	CTNAG	5 cut(s)	34, 372, 498, 527, 554
DinI	GGCGCC	1 cut(s)	109
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
EciI	GGCGGA	1 cut(s)	169
Eco147I	AGGCCT	1 cut(s)	559
Eco57I	CTGAAG	1 cut(s)	178
Eco88I	CYCGRG	1 cut(s)	216
EcoRI	GAATTC	1 cut(s)	493
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
FaeI	CATG	1 cut(s)	583
FalI	AAGNNNNNCTT	2 cut(s)	274, 306
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	1 cut(s)	579
FauNDI	CATATG	1 cut(s)	655
Fnu4HI	GCNGC	5 cut(s)	30, 408, 445, 543, 546
FokI	GGATG	3 cut(s)	374, 712, 716
Fsp4HI	GCNGC	5 cut(s)	30, 408, 445, 543, 546
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	5 cut(s)	30, 408, 445, 543, 546
GsuI	CTGGAG	2 cut(s)	245, 365
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	559
HapII	CCGG	1 cut(s)	105
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	2 cut(s)	27, 108
Hin1II	CATG	1 cut(s)	583
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HindIII	AAGCTT	1 cut(s)	13
HinfI	GANTC	1 cut(s)	460
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	2 cut(s)	122, 313
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	7 cut(s)	20, 25, 58, 321, 337, 435, 499
Hpy188III	TCNNGA	2 cut(s)	726, 735
Hpy8I	GTNNAC	1 cut(s)	213
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	2 cut(s)	121, 202
HpyCH4V	TGCA	4 cut(s)	281, 410, 583, 647
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 116, 125, 287
HpyF3I	CTNAG	5 cut(s)	34, 372, 498, 527, 554
Hsp92I	GRCGYC	2 cut(s)	27, 108
Hsp92II	CATG	1 cut(s)	583
HspAI	GCGC	1 cut(s)	108
KasI	GGCGCC	1 cut(s)	107
Kzo9I	GATC	1 cut(s)	20
LmnI	GCTCC	2 cut(s)	10, 566
LpnPI	CCDG	9 cut(s)	118, 181, 209, 271, 329, 407, 534, 649, 711
Lsp1109I	GCAGC	3 cut(s)	394, 431, 532
MaeIII	GTNAC	2 cut(s)	339, 417
MalI	GATC	1 cut(s)	22
MbiI	CCGCTC	1 cut(s)	119
MboI	GATC	1 cut(s)	20
MboII	GAAGA	1 cut(s)	115
MhlI	GDGCHC	1 cut(s)	671
MluCI	AATT	2 cut(s)	493, 513
Mly113I	GGCGCC	1 cut(s)	108
MseI	TTAA	3 cut(s)	503, 534, 608
MspA1I	CMGCKG	1 cut(s)	545
MspCI	CTTAAG	1 cut(s)	607
MspI	CCGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	4 cut(s)	38, 116, 125, 287
NarI	GGCGCC	1 cut(s)	108
NdeI	CATATG	1 cut(s)	655
NdeII	GATC	1 cut(s)	20
NlaIII	CATG	1 cut(s)	583
NlaIV	GGNNCC	3 cut(s)	6, 109, 670
PaeR7I	CTCGAG	1 cut(s)	216
PceI	AGGCCT	1 cut(s)	559
PcsI	WCGNNNNNNNCGW	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	460
PkrI	GCNGC	5 cut(s)	31, 409, 446, 544, 547
PluTI	GGCGCC	1 cut(s)	111
PsiI	TTATAA	1 cut(s)	695
PspN4I	GGNNCC	3 cut(s)	6, 109, 670
PspXI	VCTCGAGB	1 cut(s)	216
RsaI	GTAC	5 cut(s)	214, 330, 468, 616, 710
RsaNI	GTAC	5 cut(s)	213, 329, 467, 615, 709
SaqAI	TTAA	3 cut(s)	503, 534, 608
SatI	GCNGC	5 cut(s)	30, 408, 445, 543, 546
Sau3AI	GATC	1 cut(s)	20
ScaI	AGTACT	1 cut(s)	616
SduI	GDGCHC	1 cut(s)	671
SfcI	CTRYAG	1 cut(s)	561
SfoI	GGCGCC	1 cut(s)	109
Sfr274I	CTCGAG	1 cut(s)	216
SlaI	CTCGAG	1 cut(s)	216
SmlI	CTYRAG	3 cut(s)	216, 607, 733
SmoI	CTYRAG	3 cut(s)	216, 607, 733
Sse9I	AATT	2 cut(s)	493, 513
SseBI	AGGCCT	1 cut(s)	559
SsiI	CCGC	5 cut(s)	30, 117, 180, 269, 543
SspDI	GGCGCC	1 cut(s)	107
StuI	AGGCCT	1 cut(s)	559
TaqI	TCGA	7 cut(s)	10, 186, 201, 217, 273, 471, 680
TasI	AATT	2 cut(s)	493, 513
TatI	WGTACW	5 cut(s)	212, 328, 466, 614, 708
TauI	GCSGC	2 cut(s)	32, 545
TfiI	GAWTC	1 cut(s)	460
Tru1I	TTAA	3 cut(s)	503, 534, 608
Tru9I	TTAA	3 cut(s)	503, 534, 608
TscAI	CASTG	1 cut(s)	722
TseI	GCWGC	3 cut(s)	407, 444, 545
TspDTI	ATGAA	3 cut(s)	75, 525, 568
TspGWI	ACGGA	2 cut(s)	374, 601
TspRI	CASTG	1 cut(s)	722
Vha464I	CTTAAG	1 cut(s)	607
XapI	RAATTY	1 cut(s)	493
XhoI	CTCGAG	1 cut(s)	216
ZrmI	AGTACT	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.