Rorug02G0216300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003644
Physical Location & Seq
Reverse (-)
20765709 .. 20767128
1420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0216300.1

Sequence Viewer

Length: 1338 bp
ATGAGCTCCACCACTGATCCCAAGCAACTTCACATAGCCTTATTCCCATGGCTAGCCTTTGGTCACATAATACCATTTCTTGAGGTTGCAAAGTGCATAGCTCGAAGAGGGCATAAGGTTTCCTTCATCTCCACCCCAAGAAACATCCAACGCCTCCCCAAAATTCCTACAAACTTAACCCCTTTGATCAATTTAGTCCAAGTCCCACTTCCACAGGTCGAAAACCTCCCAGAAAACGCAGAAGCCAGCATGGATGTCCCATACCACATTATCCCATACCTCAAGCTAGCACATGATGGACTTGAAGCTGCTACTAAGCTAGGCATATCACGAGCCTATTTCAGCACCCTCAACGCTGCCACTGTATGCTTCTTGGGGCCAACAGCACCTGATGTAAAAGATCGCTATGCTCCTCGAACACGGCCAGAAGATTTCACTGTCCCACCCGAGTGGGTTCCTTTTCATAATTCCAAATTGGCTTTTAAGCCTTTCGAATCCAAGAAAAATTTCGAGGCTACTGTACAAAACCCTTCTGGCTTTTCGGATTCGTTACGCTTGGAGTTCACGACCAAAGATTGTGAACTCTATTTAGTCCGAAGTTGCAAAGAGATCGAGGGTGAGTGGCTGGATTTGGCTCAGGATATTCTTCCAGCACCTTTAGTGCTTCCGGTGGGGTTGTTGCCACCAATAGTAGAGCAATCTGATGAAGACAAGGAGGATAAGAGCTGGTCTATAATTGATGACTGGTTGAACAAGCACGAGAAGGGGACTGCTGTCTGTGTTGCGTTAGGAACTGAAGTGAATCCAAGTCAAGAAGACTTCACAGAATTGGCTCTGGGATTGGAACTTTCTGGGTTGCCTTTCTTTTGGGTATTGAGGAAATTACCAAGTGGTTCAGGGGATGGTAACTTGGAGATCAAGCTACCAGATGGTTTTGAAGATCGAACCGAGGGACGGGGGCTTGTTTGGAGAACTTGGGCACCTCAGCCCAAAATCTTGGCTCACGAGTCTATTGGCGGTTTCTTGACTCACTGCGGTTGGAGTTCACTCATAGAGGGACTCTATTATGGACATCCTCTTATGATGTTTCCATTCTTATATGACCAAGGGCTAAATGCTAGGCTTTGGGACAAGAAGGTTGGAATTGAGGTACCAAGAGACGAACAGAGTGGATCGTTTACGAGGGATTCGGTGGCCAACTCACTGAAATTGGTTATGGTGGATAAGGATGGGAAGGCTTATAGGGATGGGGCTAAGGAATTGAGTGCAACATTCAGAGACAGAGAGCTTCAAGAAAGATACATGGACACATGCTTAGACTATTTAGAAAAACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

445

Amino Acids

50.12

Weight (kDa)

5.35

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 253 - 430 8.6e-18 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1150
AccB1I GGYRCC 2 cut(s) 979, 1150
AciI CCGC 2 cut(s) 1017, 1035
AclWI GGATC 2 cut(s) 11, 1180
AcoI YGGCCR 2 cut(s) 422, 1194
AcsI RAATTY 2 cut(s) 162, 505
AcuI CTGAAG 1 cut(s) 816
AfaI GTAC 2 cut(s) 522, 1152
AfiI CCNNNNNNNGG 1 cut(s) 954
AgsI TTSAA 4 cut(s) 305, 751, 938, 1292
AjuI GAANNNNNNNTTGG 4 cut(s) 192, 224, 491, 523
AleI CACNNNNGTG 1 cut(s) 448
AluBI AGCT 8 cut(s) 6, 101, 286, 308, 319, 726, 922, 1288
AluI AGCT 8 cut(s) 6, 101, 286, 308, 319, 726, 922, 1288
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 1152, 1272
AlwI GGATC 2 cut(s) 11, 1180
AlwNI CAGNNNCTG 1 cut(s) 389
Ama87I CYCGRG 1 cut(s) 446
AoxI GGCC 3 cut(s) 377, 422, 1194
ApeKI GCWGC 2 cut(s) 308, 356
ApoI RAATTY 2 cut(s) 162, 505
Asp700I GAANNNNTTC 1 cut(s) 506
Asp718I GGTACC 1 cut(s) 1150
AspS9I GGNCC 1 cut(s) 377
AsuHPI GGTGA 1 cut(s) 629
AsuII TTCGAA 1 cut(s) 492
AsuNHI GCTAGC 2 cut(s) 52, 286
AvaI CYCGRG 1 cut(s) 446
BaeGI GKGCMC 1 cut(s) 982
BalI TGGCCA 1 cut(s) 1196
BanI GGYRCC 2 cut(s) 979, 1150
BanII GRGCYC 1 cut(s) 8
BauI CACGAG 3 cut(s) 330, 758, 1004
BbsI GAAGAC 2 cut(s) 714, 822
Bbv12I GWGCWC 1 cut(s) 8
BbvCI CCTCAGC 1 cut(s) 984
BbvI GCAGC 2 cut(s) 295, 343
BccI CCATC 5 cut(s) 290, 896, 923, 1223, 1241
BceAI ACGGC 1 cut(s) 437
BcgI CGANNNNNNTGC 2 cut(s) 592, 626
BclI TGATCA 1 cut(s) 186
BcoDI GTCTC 2 cut(s) 1152, 1272
BfaI CTAG 5 cut(s) 53, 287, 320, 1119, 1336
BisI GCNGC 2 cut(s) 309, 357
BlsI GCNGC 2 cut(s) 310, 358
BmeT110I CYCGRG 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 377
BmiI GGNNCC 4 cut(s) 378, 456, 981, 1152
BmtI GCTAGC 2 cut(s) 56, 290
BoxI GACNNNNGTC 1 cut(s) 773
BpiI GAAGAC 2 cut(s) 714, 822
Bpu10I CCTNAGC 3 cut(s) 636, 984, 1254
Bpu14I TTCGAA 1 cut(s) 492
BpuEI CTTGAG 2 cut(s) 101, 266
BsaJI CCNNGG 3 cut(s) 47, 948, 1105
BsaWI WCCGGW 1 cut(s) 667
Bsc4I CCNNNNNNNGG 1 cut(s) 954
Bse1I ACTGG 1 cut(s) 749
BseDI CCNNGG 3 cut(s) 47, 948, 1105
BseGI GGATG 6 cut(s) 144, 259, 907, 1072, 1234, 1252
BseLI CCNNNNNNNGG 1 cut(s) 954
BseMII CTCAG 2 cut(s) 650, 998
BseNI ACTGG 1 cut(s) 749
BseRI GAGGAG 1 cut(s) 402
BseSI GKGCMC 1 cut(s) 982
BseXI GCAGC 2 cut(s) 295, 343
BshFI GGCC 3 cut(s) 379, 424, 1196
BshNI GGYRCC 2 cut(s) 979, 1150
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 446
BsiSI CCGG 1 cut(s) 668
BslFI GGGAC 7 cut(s) 188, 242, 425, 781, 966, 1071, 1142
BslI CCNNNNNNNGG 1 cut(s) 954
BsmAI GTCTC 2 cut(s) 1152, 1272
BsmBI CGTCTC 1 cut(s) 1152
BsmFI GGGAC 7 cut(s) 188, 242, 425, 781, 966, 1071, 1142
BsnI GGCC 3 cut(s) 379, 424, 1196
BsoBI CYCGRG 1 cut(s) 446
Bsp119I TTCGAA 1 cut(s) 492
Bsp1286I GDGCHC 2 cut(s) 8, 982
Bsp1407I TGTACA 1 cut(s) 520
Bsp143I GATC 7 cut(s) 16, 186, 400, 609, 915, 940, 1172
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 2 cut(s) 1017, 1035
BspANI GGCC 3 cut(s) 379, 424, 1196
BspCNI CTCAG 2 cut(s) 649, 997
BspLI GGNNCC 4 cut(s) 378, 456, 981, 1152
BspOI GCTAGC 2 cut(s) 56, 290
BspPI GGATC 2 cut(s) 11, 1180
BspT104I TTCGAA 1 cut(s) 492
BspT107I GGYRCC 2 cut(s) 979, 1150
BsrGI TGTACA 1 cut(s) 520
BsrI ACTGG 1 cut(s) 749
BssECI CCNNGG 3 cut(s) 47, 948, 1105
BssMI GATC 7 cut(s) 16, 186, 400, 609, 915, 940, 1172
BssSI CACGAG 3 cut(s) 330, 758, 1004
BssT1I CCWWGG 2 cut(s) 47, 1105
Bst2BI CACGAG 3 cut(s) 330, 758, 1004
Bst4CI ACNGT 3 cut(s) 364, 439, 520
Bst6I CTCTTC 1 cut(s) 100
BstAUI TGTACA 1 cut(s) 520
BstBI TTCGAA 1 cut(s) 492
BstC8I GCNNGC 3 cut(s) 54, 247, 288
BstDEI CTNAG 5 cut(s) 315, 636, 984, 1254, 1315
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 6 cut(s) 144, 259, 907, 1072, 1234, 1252
BstKTI GATC 7 cut(s) 19, 189, 403, 612, 918, 943, 1175
BstMAI GTCTC 2 cut(s) 1152, 1272
BstMBI GATC 7 cut(s) 16, 186, 400, 609, 915, 940, 1172
BstNSI RCATGY 1 cut(s) 1314
BstPAI GACNNNNGTC 1 cut(s) 773
BstSLI GKGCMC 1 cut(s) 982
BstV1I GCAGC 2 cut(s) 295, 343
BstV2I GAAGAC 2 cut(s) 714, 822
BstXI CCANNNNNNTGG 2 cut(s) 450, 997
BsuRI GGCC 3 cut(s) 379, 424, 1196
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 6 cut(s) 144, 259, 907, 1072, 1234, 1252
BtsI GCAGTG 1 cut(s) 1030
BtsIMutI CAGTG 5 cut(s) 12, 360, 435, 1030, 1202
Cac8I GCNNGC 3 cut(s) 54, 247, 288
CaiI CAGNNNCTG 1 cut(s) 389
Cfr13I GGNCC 1 cut(s) 377
Csp6I GTAC 2 cut(s) 521, 1151
CviAII CATG 5 cut(s) 48, 250, 293, 1303, 1311
CviQI GTAC 2 cut(s) 521, 1151
DdeI CTNAG 5 cut(s) 315, 636, 984, 1254, 1315
DpnI GATC 7 cut(s) 18, 188, 402, 611, 917, 942, 1174
DpnII GATC 7 cut(s) 16, 186, 400, 609, 915, 940, 1172
EaeI YGGCCR 2 cut(s) 422, 1194
Eam1104I CTCTTC 1 cut(s) 100
EarI CTCTTC 1 cut(s) 100
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 47, 1105
Eco24I GRGCYC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 816
Eco88I CYCGRG 1 cut(s) 446
EcoICRI GAGCTC 1 cut(s) 6
EcoT14I CCWWGG 2 cut(s) 47, 1105
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 2 cut(s) 47, 1105
Esp3I CGTCTC 1 cut(s) 1152
FaeI CATG 5 cut(s) 51, 253, 296, 1306, 1314
FalI AAGNNNNNCTT 4 cut(s) 107, 139, 192, 224
FaqI GGGAC 7 cut(s) 188, 242, 425, 781, 966, 1071, 1142
FatI CATG 5 cut(s) 47, 249, 292, 1302, 1310
FbaI TGATCA 1 cut(s) 186
Fnu4HI GCNGC 2 cut(s) 309, 357
FokI GGATG 6 cut(s) 131, 266, 914, 1059, 1241, 1259
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 309, 357
FspBI CTAG 5 cut(s) 53, 287, 320, 1119, 1336
GluI GCNGC 2 cut(s) 309, 357
HaeIII GGCC 3 cut(s) 379, 424, 1196
HapII CCGG 1 cut(s) 668
Hin1II CATG 5 cut(s) 51, 253, 296, 1306, 1314
HinfI GANTC 7 cut(s) 494, 545, 802, 1007, 1027, 1059, 1187
HpaII CCGG 1 cut(s) 668
HphI GGTGA 1 cut(s) 629
Hpy166II GTNNAC 4 cut(s) 564, 581, 1046, 1179
Hpy188I TCNGA 4 cut(s) 544, 596, 703, 1277
Hpy188III TCNNGA 8 cut(s) 80, 330, 565, 638, 812, 1004, 1024, 1292
Hpy8I GTNNAC 4 cut(s) 564, 581, 1046, 1179
HpyAV CCTTC 5 cut(s) 133, 540, 757, 1129, 1228
HpyCH4III ACNGT 3 cut(s) 364, 439, 520
HpyCH4V TGCA 4 cut(s) 89, 96, 603, 1268
HpyF3I CTNAG 5 cut(s) 315, 636, 984, 1254, 1315
Hsp92II CATG 5 cut(s) 51, 253, 296, 1306, 1314
KpnI GGTACC 1 cut(s) 1154
Ksp22I TGATCA 1 cut(s) 186
Kzo9I GATC 7 cut(s) 16, 186, 400, 609, 915, 940, 1172
LmnI GCTCC 2 cut(s) 11, 415
Lsp1109I GCAGC 2 cut(s) 295, 343
MaeI CTAG 5 cut(s) 53, 287, 320, 1119, 1336
MaeIII GTNAC 3 cut(s) 62, 549, 905
MalI GATC 7 cut(s) 18, 188, 402, 611, 917, 942, 1174
MboI GATC 7 cut(s) 16, 186, 400, 609, 915, 940, 1172
MboII GAAGA 6 cut(s) 117, 440, 638, 719, 827, 950
MhlI GDGCHC 2 cut(s) 8, 982
MlsI TGGCCA 1 cut(s) 1196
MluNI TGGCCA 1 cut(s) 1196
MlyI GAGTC 3 cut(s) 1016, 1021, 1053
MmeI TCCRAC 3 cut(s) 172, 1019, 1120
Mox20I TGGCCA 1 cut(s) 1196
MroXI GAANNNNTTC 1 cut(s) 506
MscI TGGCCA 1 cut(s) 1196
MseI TTAA 2 cut(s) 176, 483
MslI CAYNNNNRTG 1 cut(s) 448
Msp20I TGGCCA 1 cut(s) 1196
MspI CCGG 1 cut(s) 668
NcoI CCATGG 1 cut(s) 47
NdeII GATC 7 cut(s) 16, 186, 400, 609, 915, 940, 1172
NheI GCTAGC 2 cut(s) 52, 286
NlaIII CATG 5 cut(s) 51, 253, 296, 1306, 1314
NlaIV GGNNCC 4 cut(s) 378, 456, 981, 1152
NmuCI GTSAC 1 cut(s) 62
NspI RCATGY 1 cut(s) 1314
NspV TTCGAA 1 cut(s) 492
OliI CACNNNNGTG 1 cut(s) 448
PdmI GAANNNNTTC 1 cut(s) 506
PfeI GAWTC 4 cut(s) 494, 545, 802, 1187
PkrI GCNGC 2 cut(s) 310, 358
PleI GAGTC 3 cut(s) 1015, 1021, 1053
PpsI GAGTC 3 cut(s) 1015, 1021, 1053
PshAI GACNNNNGTC 1 cut(s) 773
Psp124BI GAGCTC 1 cut(s) 8
PspN4I GGNNCC 4 cut(s) 378, 456, 981, 1152
PspPI GGNCC 1 cut(s) 377
PstNI CAGNNNCTG 1 cut(s) 389
RsaI GTAC 2 cut(s) 522, 1152
RsaNI GTAC 2 cut(s) 521, 1151
RseI CAYNNNNRTG 1 cut(s) 448
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 176, 483
SatI GCNGC 2 cut(s) 309, 357
Sau3AI GATC 7 cut(s) 16, 186, 400, 609, 915, 940, 1172
Sau96I GGNCC 1 cut(s) 377
SchI GAGTC 3 cut(s) 1016, 1021, 1053
SduI GDGCHC 2 cut(s) 8, 982
SfuI TTCGAA 1 cut(s) 492
SmiMI CAYNNNNRTG 1 cut(s) 448
SmlI CTYRAG 2 cut(s) 80, 281
SmoI CTYRAG 2 cut(s) 80, 281
SsiI CCGC 2 cut(s) 1017, 1035
SspMI CTAG 5 cut(s) 53, 287, 320, 1119, 1336
SstI GAGCTC 1 cut(s) 8
StyI CCWWGG 2 cut(s) 47, 1105
TaaI ACNGT 3 cut(s) 364, 439, 520
TaqI TCGA 7 cut(s) 103, 219, 415, 492, 510, 612, 943
TatI WGTACW 1 cut(s) 520
TfiI GAWTC 4 cut(s) 494, 545, 802, 1187
Tru1I TTAA 2 cut(s) 176, 483
Tru9I TTAA 2 cut(s) 176, 483
TscAI CASTG 5 cut(s) 19, 367, 442, 1037, 1209
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 2 cut(s) 308, 356
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 3 cut(s) 115, 452, 720
TspRI CASTG 5 cut(s) 19, 367, 442, 1037, 1209
XapI RAATTY 2 cut(s) 162, 505
XceI RCATGY 1 cut(s) 1314
XmnI GAANNNNTTC 1 cut(s) 506
XspI CTAG 5 cut(s) 53, 287, 320, 1119, 1336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.