Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003644

Physical Location & Seq

Genomic Coordinates Reverse (-)

29216062 .. 29221112

Gene Structure 5051 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018394

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAGATTGGTTGCATATCATTCAAGTACCACGAGTAGAGAAGGCTGCTTTACAAATGGTCCTACCGTACCTCCCAAGGAAGAACCTCTTTGTCTCCAAGGGTTCCAAACGTCTCGTCAAACCCGAGATCACAGATGCATCAGGGTAGACTTGGTCACCTGGGGCGTGTTTGAGGATCATTCAAGCGTGGATGGAGTTCAGCAGCCAATATGCTTCCACAAGTTACTGGAGATAAGTGCTATGGATGTTATTGCTAAGGGAAAGTCTTGTATTTCTGCTCAACAAAAAGCGGCAAAAAAGTTACTGAATAAAGCTTTGAAAATAAGGTTGGGCAGAGGATTTTATGGGGAGTGTCTGGGAGTGAGAGCTGATGGGAATTCCGAGTTAAGCGATGAAATTGGCAAGCAGCTTAGTGTGAAAAGTGCCGCTGCTGGTCATAGGCCTATTGGAGCTGTTATATACATGCAACGGAAAAACCTCAAAATGTGCTTAAGGAGTATTGATACTGCTACCGATACCTCTGAAGTCGCAAAGGCATATGGAGGAGGAGGCACCCCAAGTTGTAGTTCCTTTATTATAAGGATGGATGAGTACAATCAGTGGGTATCAGGAAATTCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

22.67

Weight (kDa)

9.15

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09580 AT5G09580
fragaria_vesca	FvH4_1g23320 FvH4_1g23320
malus_domestica	MD10G1056400.v1.1
prunus_persica	Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1
pyrus_communis	pycom10g04330 pycom10g04340
rosa_chinensis	RchiOBHm_Chr2g0118131 RchiOBHm_Chr2g0118141 RchiOBHm_Chr2g0118161
rosa_laevigata	RLG00000018394 RLG00000018395 RLG00000018401
rosa_multiflora	Rmu_sc0001618.1_g000003 Rmu_sc0001618.1_g000008 Rmu_sc0001618.1_g000012 Rmu_sc0009463.1_g000001 Rmu_sc0009463.1_g000017
rosa_roxburghii	Rroxscaffold_2G00125850 Rroxscaffold_2G00125900 Rroxscaffold_3G00234990 Rroxscaffold_4G00309060
rosa_rugosa	Rorug02G0216300 Rorug02G0217100
rosa_samantha	Rh2AG273200 Rh2BG285500 Rh2CG410200 Rh6DG346000 Rh7BG104700
rosa_wichuraiana	Rw2G021570 Rw2G021590 Rw2G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	578
AccB1I	GGYRCC	1 cut(s)	551
AccI	GTMKAC	1 cut(s)	147
AciI	CCGC	2 cut(s)	290, 426
AclWI	GGATC	1 cut(s)	183
AcsI	RAATTY	2 cut(s)	376, 613
AcuI	CTGAAG	1 cut(s)	543
AfaI	GTAC	3 cut(s)	28, 69, 593
AflII	CTTAAG	1 cut(s)	490
AgsI	TTSAA	4 cut(s)	24, 183, 319, 618
AjnI	CCWGG	1 cut(s)	158
AjuI	GAANNNNNNNTTGG	4 cut(s)	311, 343, 550, 582
AluBI	AGCT	4 cut(s)	314, 368, 409, 452
AluI	AGCT	4 cut(s)	314, 368, 409, 452
Alw26I	GTCTC	2 cut(s)	98, 117
AlwI	GGATC	1 cut(s)	183
Ama87I	CYCGRG	1 cut(s)	123
AoxI	GGCC	1 cut(s)	440
ApeKI	GCWGC	4 cut(s)	45, 202, 406, 428
ApoI	RAATTY	2 cut(s)	376, 613
ArsI	GACNNNNNNTTYG	2 cut(s)	100, 132
AspS9I	GGNCC	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	148
AvaI	CYCGRG	1 cut(s)	123
AvaII	GGWCC	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	551
BauI	CACGAG	1 cut(s)	31
BbvI	GCAGC	4 cut(s)	32, 214, 415, 418
BccI	CCATC	3 cut(s)	185, 365, 577
BciT130I	CCWGG	1 cut(s)	160
BcoDI	GTCTC	2 cut(s)	98, 117
BfrI	CTTAAG	1 cut(s)	490
BisI	GCNGC	6 cut(s)	46, 203, 291, 407, 426, 429
BlsI	GCNGC	6 cut(s)	47, 204, 292, 408, 427, 430
Bme1390I	CCNGG	1 cut(s)	160
Bme18I	GGWCC	1 cut(s)	59
BmeT110I	CYCGRG	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	59
BmiI	GGNNCC	2 cut(s)	104, 553
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	2 cut(s)	125, 147
BpmI	CTGGAG	1 cut(s)	248
Bpu10I	CCTNAGC	1 cut(s)	255
BsaJI	CCNNGG	3 cut(s)	75, 97, 159
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bse1I	ACTGG	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	3 cut(s)	75, 97, 159
BseGI	GGATG	4 cut(s)	196, 250, 588, 592
BseNI	ACTGG	1 cut(s)	231
BseRI	GAGGAG	2 cut(s)	558, 561
BseXI	GCAGC	4 cut(s)	32, 214, 415, 418
BshFI	GGCC	1 cut(s)	442
BshNI	GGYRCC	1 cut(s)	551
BsiHKCI	CYCGRG	1 cut(s)	123
BsmAI	GTCTC	2 cut(s)	98, 117
BsmBI	CGTCTC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	442
BsoBI	CYCGRG	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	127, 175
BspACI	CCGC	2 cut(s)	290, 426
BspANI	GGCC	1 cut(s)	442
BspLI	GGNNCC	2 cut(s)	104, 553
BspPI	GGATC	1 cut(s)	183
BspT107I	GGYRCC	1 cut(s)	551
BspTI	CTTAAG	1 cut(s)	490
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	3 cut(s)	75, 97, 159
BssMI	GATC	2 cut(s)	127, 175
BssSI	CACGAG	1 cut(s)	31
BssT1I	CCWWGG	2 cut(s)	75, 97
Bst2BI	CACGAG	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	160
Bst4CI	ACNGT	1 cut(s)	67
BstAFI	CTTAAG	1 cut(s)	490
BstC8I	GCNNGC	1 cut(s)	404
BstDEI	CTNAG	2 cut(s)	255, 410
BstEII	GGTNACC	1 cut(s)	154
BstF5I	GGATG	4 cut(s)	196, 250, 588, 592
BstKTI	GATC	2 cut(s)	130, 178
BstMAI	GTCTC	2 cut(s)	98, 117
BstMBI	GATC	2 cut(s)	127, 175
BstNI	CCWGG	1 cut(s)	160
BstNSI	RCATGY	1 cut(s)	466
BstPI	GGTNACC	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	158
BstV1I	GCAGC	4 cut(s)	32, 214, 415, 418
BsuRI	GGCC	1 cut(s)	442
BtgZI	GCGATG	1 cut(s)	405
BtsCI	GGATG	4 cut(s)	196, 250, 588, 592
BtsIMutI	CAGTG	1 cut(s)	605
Cac8I	GCNNGC	1 cut(s)	404
Cfr13I	GGNCC	1 cut(s)	59
Csp6I	GTAC	3 cut(s)	27, 68, 592
CviAII	CATG	1 cut(s)	463
CviJI	RGCY	7 cut(s)	45, 205, 314, 368, 409, 442, 452
CviKI_1	RGCY	7 cut(s)	45, 205, 314, 368, 409, 442, 452
CviQI	GTAC	3 cut(s)	27, 68, 592
DdeI	CTNAG	2 cut(s)	255, 410
DpnI	GATC	2 cut(s)	129, 177
DpnII	GATC	2 cut(s)	127, 175
Eco130I	CCWWGG	2 cut(s)	75, 97
Eco147I	AGGCCT	1 cut(s)	442
Eco47I	GGWCC	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	543
Eco88I	CYCGRG	1 cut(s)	123
Eco91I	GGTNACC	1 cut(s)	154
EcoO65I	GGTNACC	1 cut(s)	154
EcoRI	GAATTC	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	158
EcoT14I	CCWWGG	2 cut(s)	75, 97
EcoT22I	ATGCAT	1 cut(s)	140
ErhI	CCWWGG	2 cut(s)	75, 97
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	1 cut(s)	466
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FatI	CATG	1 cut(s)	462
FauNDI	CATATG	1 cut(s)	538
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	6 cut(s)	46, 203, 291, 407, 426, 429
FokI	GGATG	4 cut(s)	203, 257, 595, 599
Fsp4HI	GCNGC	6 cut(s)	46, 203, 291, 407, 426, 429
GluI	GCNGC	6 cut(s)	46, 203, 291, 407, 426, 429
GsuI	CTGGAG	1 cut(s)	248
HaeIII	GGCC	1 cut(s)	442
Hin1II	CATG	1 cut(s)	466
HindIII	AAGCTT	1 cut(s)	312
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	2 cut(s)	382, 523
Hpy188III	TCNNGA	2 cut(s)	609, 618
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	3 cut(s)	14, 138, 466
HpyF3I	CTNAG	2 cut(s)	255, 410
HpySE526I	ACGT	1 cut(s)	110
Hsp92II	CATG	1 cut(s)	466
Kzo9I	GATC	2 cut(s)	127, 175
LmnI	GCTCC	1 cut(s)	449
LpnPI	CCDG	7 cut(s)	127, 145, 172, 212, 341, 417, 594
Lsp1109I	GCAGC	4 cut(s)	32, 214, 415, 418
LweI	GCATC	2 cut(s)	125, 147
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	3 cut(s)	154, 222, 300
MalI	GATC	2 cut(s)	129, 177
MboI	GATC	2 cut(s)	127, 175
MboII	GAAGA	1 cut(s)	92
MluCI	AATT	3 cut(s)	376, 396, 613
MnlI	CCTC	9 cut(s)	81, 96, 166, 329, 488, 529, 536, 539, 542
Mph1103I	ATGCAT	1 cut(s)	140
MseI	TTAA	2 cut(s)	386, 491
MspA1I	CMGCKG	1 cut(s)	428
MspCI	CTTAAG	1 cut(s)	490
MspR9I	CCNGG	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	160
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	2 cut(s)	127, 175
NlaIII	CATG	1 cut(s)	466
NlaIV	GGNNCC	2 cut(s)	104, 553
NmuCI	GTSAC	1 cut(s)	154
NsiI	ATGCAT	1 cut(s)	140
NspI	RCATGY	1 cut(s)	466
PceI	AGGCCT	1 cut(s)	442
PcsI	WCGNNNNNNNCGW	1 cut(s)	121
PflFI	GACNNNGTC	1 cut(s)	152
PkrI	GCNGC	6 cut(s)	47, 204, 292, 408, 427, 430
PsiI	TTATAA	1 cut(s)	578
Psp6I	CCWGG	1 cut(s)	158
PspEI	GGTNACC	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	2 cut(s)	104, 553
PspPI	GGNCC	1 cut(s)	59
PsyI	GACNNNGTC	1 cut(s)	152
RsaI	GTAC	3 cut(s)	28, 69, 593
RsaNI	GTAC	3 cut(s)	27, 68, 592
SaqAI	TTAA	2 cut(s)	386, 491
SatI	GCNGC	6 cut(s)	46, 203, 291, 407, 426, 429
Sau3AI	GATC	2 cut(s)	127, 175
Sau96I	GGNCC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	160
SfaNI	GCATC	2 cut(s)	125, 147
SinI	GGWCC	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	490
SmoI	CTYRAG	1 cut(s)	490
Sse9I	AATT	3 cut(s)	376, 396, 613
SseBI	AGGCCT	1 cut(s)	442
SsiI	CCGC	2 cut(s)	290, 426
StuI	AGGCCT	1 cut(s)	442
StyD4I	CCNGG	1 cut(s)	158
StyI	CCWWGG	2 cut(s)	75, 97
TaaI	ACNGT	1 cut(s)	67
TaiI	ACGT	1 cut(s)	113
TasI	AATT	3 cut(s)	376, 396, 613
TatI	WGTACW	1 cut(s)	591
TauI	GCSGC	2 cut(s)	293, 428
Tru1I	TTAA	2 cut(s)	386, 491
Tru9I	TTAA	2 cut(s)	386, 491
TscAI	CASTG	1 cut(s)	605
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	4 cut(s)	45, 202, 406, 428
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	1 cut(s)	408
TspGWI	ACGGA	1 cut(s)	484
TspRI	CASTG	1 cut(s)	605
Tth111I	GACNNNGTC	1 cut(s)	152
Vha464I	CTTAAG	1 cut(s)	490
VpaK11BI	GGWCC	1 cut(s)	59
XapI	RAATTY	2 cut(s)	376, 613
XceI	RCATGY	1 cut(s)	466
XmiI	GTMKAC	1 cut(s)	147
Zsp2I	ATGCAT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.