Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003644

Physical Location & Seq

Genomic Coordinates Reverse (-)

29281511 .. 29284575

Gene Structure 3065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018401

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCTCTTTCTTCCGTTGGAAAATGGAGGAGAACCATAGCAGTCTCAGCAGCAATGGCTCCTCTTCCTCTATCACATACCCGAAGCTTCCGATCAGACGCCGCCTTAGAAGCTCTATCCAAAGCCTCCGACGAAAAAGTCCCCAACTTGCTTCTCTACAACTACCCTTCTTTCTCCGGCGCCTTCTCCGCTCTCTTTGCTCACCTCTACCACTCTCGCCTTAACCTACCGCTCCTCTCTCTCCCTTTCTCTTCCGTCGAACCCTTCAGGGTCGATGATTTGTGTACTCGAGGACTGGAGAGGTGCTACTTCCTTGATTTTCTTGGCCCCAAAGGATTTGCGGTCGAGTTTGCAAGGAGAGCTTCGTGCGAGGTGATTGCTTTCGATCATCGAAATTCTGTACTACCGGCGATGCCCTCGGATGAGGATTGCCCGGACAATCTCACATTTCGATTACTGGAGATAAGTGCTACGGATGTTATTGCTAAGGGAAAGTCATATATATCTGCTCGCCAAAAGGCTGCAAATAAGTTACTGGACAAAGCTCTGAAAATAAGGTTGGGCGGAGGATTTTACGGGGAGTGTCTGGGAGTGAGAGCTGATGGGAATTCCGAGTTAAGTGATGAAATTGGCAAGCAACTTAGTGTAAAAAGTGCCGCTGCTGGCCTAAGGCCTATAGGAGCTGTTATATTCATGCAACGGAGAAACCTCAAAATGTGCTTAAGGAGTACTGATACTGCTACTGATACCTGTGAAGTTGCAAAGGCATATGGAGGAGGGGGCACCCCAAGTTCGAGTTCCTTTATTATAAGGATGGATGAGTACAATCAGTGGGTTTCAGGAAACTCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

285

Amino Acids

30.98

Weight (kDa)

8.94

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09580 AT5G09580
fragaria_vesca	FvH4_1g23320 FvH4_1g23320
malus_domestica	MD10G1056400.v1.1
prunus_persica	Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1
pyrus_communis	pycom10g04330 pycom10g04340
rosa_chinensis	RchiOBHm_Chr2g0118131 RchiOBHm_Chr2g0118141 RchiOBHm_Chr2g0118161
rosa_laevigata	RLG00000018394 RLG00000018395 RLG00000018401
rosa_multiflora	Rmu_sc0001618.1_g000003 Rmu_sc0001618.1_g000008 Rmu_sc0001618.1_g000012 Rmu_sc0009463.1_g000001 Rmu_sc0009463.1_g000017
rosa_roxburghii	Rroxscaffold_2G00125850 Rroxscaffold_2G00125900 Rroxscaffold_3G00234990 Rroxscaffold_4G00309060
rosa_rugosa	Rorug02G0216300 Rorug02G0217100
rosa_samantha	Rh2AG273200 Rh2BG285500 Rh2CG410200 Rh6DG346000 Rh7BG104700
rosa_wichuraiana	Rw2G021570 Rw2G021590 Rw2G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	809
AasI	GACNNNNNNGTC	1 cut(s)	137
AccB1I	GGYRCC	2 cut(s)	179, 782
AccBSI	CCGCTC	2 cut(s)	191, 232
AciI	CCGC	6 cut(s)	102, 189, 230, 341, 564, 657
AcsI	RAATTY	2 cut(s)	394, 607
AcuI	CTGAAG	1 cut(s)	250
AcyI	GRCGYC	2 cut(s)	99, 180
AfaI	GTAC	4 cut(s)	286, 402, 730, 824
AflII	CTTAAG	1 cut(s)	721
AjuI	GAANNNNNNNTTGG	4 cut(s)	542, 574, 781, 813
AluBI	AGCT	6 cut(s)	87, 113, 362, 545, 599, 683
AluI	AGCT	6 cut(s)	87, 113, 362, 545, 599, 683
Alw26I	GTCTC	1 cut(s)	49
Ama87I	CYCGRG	1 cut(s)	288
AoxI	GGCC	3 cut(s)	325, 664, 671
ApeKI	GCWGC	3 cut(s)	50, 521, 659
ApoI	RAATTY	2 cut(s)	394, 607
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	326
AsuC2I	CCSGG	1 cut(s)	434
AsuHPI	GGTGA	2 cut(s)	194, 385
AvaI	CYCGRG	1 cut(s)	288
AxyI	CCTNAGG	1 cut(s)	668
BaeGI	GKGCMC	1 cut(s)	785
BanI	GGYRCC	2 cut(s)	179, 782
BbvI	GCAGC	3 cut(s)	62, 508, 646
BccI	CCATC	2 cut(s)	596, 808
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BcnI	CCSGG	1 cut(s)	434
BcoDI	GTCTC	1 cut(s)	49
BfmI	CTRYAG	1 cut(s)	675
BfoI	RGCGCY	1 cut(s)	183
BfrI	CTTAAG	1 cut(s)	721
BisI	GCNGC	5 cut(s)	51, 102, 522, 657, 660
BlsI	GCNGC	5 cut(s)	52, 103, 523, 658, 661
BmcAI	AGTACT	1 cut(s)	730
Bme1390I	CCNGG	1 cut(s)	434
BmeT110I	CYCGRG	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	4 cut(s)	60, 181, 328, 784
BmrFI	CCNGG	1 cut(s)	434
BmsI	GCATC	1 cut(s)	402
BpmI	CTGGAG	2 cut(s)	317, 479
Bpu10I	CCTNAGC	1 cut(s)	486
BpuEI	CTTGAG	1 cut(s)	832
BpuMI	CCSGG	1 cut(s)	434
BsaHI	GRCGYC	2 cut(s)	99, 180
BsaJI	CCNNGG	1 cut(s)	417
Bse118I	RCCGGY	1 cut(s)	406
Bse1I	ACTGG	3 cut(s)	300, 462, 540
Bse21I	CCTNAGG	1 cut(s)	668
Bse3DI	GCAATG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	4 cut(s)	427, 481, 819, 823
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	3 cut(s)	300, 462, 540
BseRI	GAGGAG	4 cut(s)	43, 51, 224, 789
BseSI	GKGCMC	1 cut(s)	785
BseXI	GCAGC	3 cut(s)	62, 508, 646
Bsh1285I	CGRYCG	1 cut(s)	345
BshFI	GGCC	3 cut(s)	327, 666, 673
BshNI	GGYRCC	2 cut(s)	179, 782
BsiEI	CGRYCG	1 cut(s)	345
BsiHKCI	CYCGRG	1 cut(s)	288
BsiSI	CCGG	3 cut(s)	177, 407, 434
BslFI	GGGAC	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	3 cut(s)	327, 666, 673
BsoBI	CYCGRG	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	785
Bsp143I	GATC	2 cut(s)	92, 385
BspACI	CCGC	6 cut(s)	102, 189, 230, 341, 564, 657
BspANI	GGCC	3 cut(s)	327, 666, 673
BspCNI	CTCAG	1 cut(s)	59
BspLI	GGNNCC	4 cut(s)	60, 181, 328, 784
BspT107I	GGYRCC	2 cut(s)	179, 782
BspTI	CTTAAG	1 cut(s)	721
BsrBI	CCGCTC	2 cut(s)	191, 232
BsrDI	GCAATG	1 cut(s)	60
BsrFI	RCCGGY	1 cut(s)	406
BsrI	ACTGG	3 cut(s)	300, 462, 540
BssAI	RCCGGY	1 cut(s)	406
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	2 cut(s)	92, 385
BssNI	GRCGYC	2 cut(s)	99, 180
Bst6I	CTCTTC	2 cut(s)	69, 256
BstACI	GRCGYC	2 cut(s)	99, 180
BstAFI	CTTAAG	1 cut(s)	721
BstC8I	GCNNGC	3 cut(s)	511, 635, 664
BstDEI	CTNAG	5 cut(s)	46, 106, 486, 641, 668
BstF5I	GGATG	4 cut(s)	427, 481, 819, 823
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	2 cut(s)	95, 388
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	2 cut(s)	92, 385
BstMCI	CGRYCG	1 cut(s)	345
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 56, 110, 188, 197, 359
BstSCI	CCNGG	1 cut(s)	432
BstSFI	CTRYAG	1 cut(s)	675
BstSLI	GKGCMC	1 cut(s)	785
BstV1I	GCAGC	3 cut(s)	62, 508, 646
Bsu36I	CCTNAGG	1 cut(s)	668
BsuRI	GGCC	3 cut(s)	327, 666, 673
BtgZI	GCGATG	1 cut(s)	425
BtsCI	GGATG	4 cut(s)	427, 481, 819, 823
BtsIMutI	CAGTG	1 cut(s)	836
Cac8I	GCNNGC	3 cut(s)	511, 635, 664
CfoI	GCGC	1 cut(s)	182
Cfr10I	RCCGGY	1 cut(s)	406
Cfr13I	GGNCC	1 cut(s)	326
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	4 cut(s)	285, 401, 729, 823
CviAII	CATG	1 cut(s)	694
CviQI	GTAC	4 cut(s)	285, 401, 729, 823
DdeI	CTNAG	5 cut(s)	46, 106, 486, 641, 668
DinI	GGCGCC	1 cut(s)	181
DpnI	GATC	2 cut(s)	94, 387
DpnII	GATC	2 cut(s)	92, 385
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
Eam1104I	CTCTTC	2 cut(s)	69, 256
EarI	CTCTTC	2 cut(s)	69, 256
EciI	GGCGGA	1 cut(s)	579
Eco147I	AGGCCT	1 cut(s)	673
Eco57I	CTGAAG	1 cut(s)	250
Eco81I	CCTNAGG	1 cut(s)	668
Eco88I	CYCGRG	1 cut(s)	288
EcoRI	GAATTC	1 cut(s)	607
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
FaeI	CATG	1 cut(s)	697
FalI	AAGNNNNNCTT	2 cut(s)	346, 378
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	1 cut(s)	693
FauNDI	CATATG	1 cut(s)	769
Fnu4HI	GCNGC	5 cut(s)	51, 102, 522, 657, 660
FokI	GGATG	4 cut(s)	434, 488, 826, 830
Fsp4HI	GCNGC	5 cut(s)	51, 102, 522, 657, 660
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	5 cut(s)	51, 102, 522, 657, 660
GsuI	CTGGAG	2 cut(s)	317, 479
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	3 cut(s)	327, 666, 673
HapII	CCGG	3 cut(s)	177, 407, 434
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	182
Hin1I	GRCGYC	2 cut(s)	99, 180
Hin1II	CATG	1 cut(s)	697
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HindIII	AAGCTT	1 cut(s)	85
HpaII	CCGG	3 cut(s)	177, 407, 434
HphI	GGTGA	2 cut(s)	194, 385
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	6 cut(s)	92, 97, 130, 421, 549, 613
Hpy188III	TCNNGA	2 cut(s)	840, 849
Hpy8I	GTNNAC	1 cut(s)	285
Hpy99I	CGWCG	2 cut(s)	134, 260
HpyAV	CCTTC	3 cut(s)	177, 193, 274
HpyCH4V	TGCA	4 cut(s)	353, 524, 697, 761
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 56, 110, 188, 197, 359
HpyF3I	CTNAG	5 cut(s)	46, 106, 486, 641, 668
Hsp92I	GRCGYC	2 cut(s)	99, 180
Hsp92II	CATG	1 cut(s)	697
HspAI	GCGC	1 cut(s)	180
KasI	GGCGCC	1 cut(s)	179
Kzo9I	GATC	2 cut(s)	92, 385
LmnI	GCTCC	3 cut(s)	64, 237, 680
Lsp1109I	GCAGC	3 cut(s)	62, 508, 646
LweI	GCATC	1 cut(s)	402
MaeIII	GTNAC	1 cut(s)	531
MalI	GATC	2 cut(s)	94, 387
MbiI	CCGCTC	2 cut(s)	191, 232
MboI	GATC	2 cut(s)	92, 385
MboII	GAAGA	3 cut(s)	3, 56, 243
MhlI	GDGCHC	1 cut(s)	785
MluCI	AATT	3 cut(s)	394, 607, 627
Mly113I	GGCGCC	1 cut(s)	180
MmeI	TCCRAC	1 cut(s)	153
MseI	TTAA	3 cut(s)	222, 617, 722
MspA1I	CMGCKG	1 cut(s)	659
MspCI	CTTAAG	1 cut(s)	721
MspI	CCGG	3 cut(s)	177, 407, 434
MspR9I	CCNGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	6 cut(s)	47, 56, 110, 188, 197, 359
NarI	GGCGCC	1 cut(s)	180
NciI	CCSGG	1 cut(s)	434
NdeI	CATATG	1 cut(s)	769
NdeII	GATC	2 cut(s)	92, 385
NlaIII	CATG	1 cut(s)	697
NlaIV	GGNNCC	4 cut(s)	60, 181, 328, 784
PaeR7I	CTCGAG	1 cut(s)	288
PceI	AGGCCT	1 cut(s)	673
PkrI	GCNGC	5 cut(s)	52, 103, 523, 658, 661
PluTI	GGCGCC	1 cut(s)	183
PsiI	TTATAA	1 cut(s)	809
PspN4I	GGNNCC	4 cut(s)	60, 181, 328, 784
PspPI	GGNCC	1 cut(s)	326
PspXI	VCTCGAGB	1 cut(s)	288
RsaI	GTAC	4 cut(s)	286, 402, 730, 824
RsaNI	GTAC	4 cut(s)	285, 401, 729, 823
SaqAI	TTAA	3 cut(s)	222, 617, 722
SatI	GCNGC	5 cut(s)	51, 102, 522, 657, 660
Sau3AI	GATC	2 cut(s)	92, 385
Sau96I	GGNCC	1 cut(s)	326
ScaI	AGTACT	1 cut(s)	730
ScrFI	CCNGG	1 cut(s)	434
SduI	GDGCHC	1 cut(s)	785
SfaNI	GCATC	1 cut(s)	402
SfcI	CTRYAG	1 cut(s)	675
SfoI	GGCGCC	1 cut(s)	181
Sfr274I	CTCGAG	1 cut(s)	288
SlaI	CTCGAG	1 cut(s)	288
SmlI	CTYRAG	3 cut(s)	288, 721, 847
SmoI	CTYRAG	3 cut(s)	288, 721, 847
Sse9I	AATT	3 cut(s)	394, 607, 627
SseBI	AGGCCT	1 cut(s)	673
SsiI	CCGC	6 cut(s)	102, 189, 230, 341, 564, 657
SspDI	GGCGCC	1 cut(s)	179
StuI	AGGCCT	1 cut(s)	673
StyD4I	CCNGG	1 cut(s)	432
TaqI	TCGA	8 cut(s)	258, 273, 289, 345, 384, 391, 451, 794
TasI	AATT	3 cut(s)	394, 607, 627
TatI	WGTACW	4 cut(s)	284, 400, 728, 822
TauI	GCSGC	2 cut(s)	104, 659
Tru1I	TTAA	3 cut(s)	222, 617, 722
Tru9I	TTAA	3 cut(s)	222, 617, 722
TscAI	CASTG	1 cut(s)	836
TseI	GCWGC	3 cut(s)	50, 521, 659
TspDTI	ATGAA	2 cut(s)	639, 682
TspGWI	ACGGA	4 cut(s)	4, 244, 488, 715
TspRI	CASTG	1 cut(s)	836
Vha464I	CTTAAG	1 cut(s)	721
XapI	RAATTY	2 cut(s)	394, 607
XhoI	CTCGAG	1 cut(s)	288
ZrmI	AGTACT	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.