Rroxscaffold_4G00309060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003644
Physical Location & Seq
Forward (+)
30697593 .. 30698975
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00309060.1

Sequence Viewer

Length: 396 bp
ATGGATGCAAGTTTGTTAGAAGTTGAGGACAGGGATCATGTGGAAATGGTGCTTAAATACATTGAGGATGGAGATCTCCATCGTTGGAGCTTACCGGATATTAGGGCGTTTAATATTGGACTTGGTCAATGGCGCTCAAAGCAAGGAATCAAAGCGAACGTGGGCGACGTCATTAGTGCAACCGAAGTGATCGACGCGCCTACACGGGGAGTGGAGCACCTAACATCGACGCGTGGCGCAGCGATTGACGAGAAAGTGAAGCGCGCCGGGGTGGGGCCGGCATGCCACGTGGATTCTTCCCGTTGGTGGATTTTGAATTCGGGCCTAACGGTTGGGCAATCCCAGCCCTTCATTTCAATCAAATTTTCAATGAACTGTGCAATTGGTGAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.42

Weight (kDa)

5.5

Isoelectric Point (pI)

51.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 171
AccII CGCG 3 cut(s) 197, 232, 264
AclWI GGATC 1 cut(s) 42
AcsI RAATTY 2 cut(s) 316, 362
AcvI CACGTG 1 cut(s) 289
AcyI GRCGYC 1 cut(s) 168
AfiI CCNNNNNNNGG 3 cut(s) 206, 273, 306
AflIII ACRYGT 1 cut(s) 230
AgsI TTSAA 3 cut(s) 316, 357, 369
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
Alw21I GWGCWC 1 cut(s) 219
AlwI GGATC 1 cut(s) 42
AoxI GGCC 2 cut(s) 275, 322
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 2 cut(s) 316, 362
AspLEI GCGC 5 cut(s) 135, 199, 239, 264, 266
AspS9I GGNCC 2 cut(s) 275, 322
AsuC2I CCSGG 1 cut(s) 268
BbrPI CACGTG 1 cut(s) 289
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 251
BccI CCATC 2 cut(s) 62, 87
BcnI CCSGG 1 cut(s) 268
BfoI RGCGCY 1 cut(s) 136
BglII AGATCT 1 cut(s) 73
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
Bme1390I CCNGG 1 cut(s) 268
BmgT120I GGNCC 2 cut(s) 275, 322
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 268
BpuMI CCSGG 1 cut(s) 268
BsaAI YACGTR 1 cut(s) 289
BsaBI GATNNNNATC 2 cut(s) 72, 78
BsaHI GRCGYC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 267
BsaWI WCCGGW 1 cut(s) 94
Bsc4I CCNNNNNNNGG 3 cut(s) 206, 273, 306
Bse118I RCCGGY 1 cut(s) 277
Bse8I GATNNNNATC 2 cut(s) 72, 78
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 2 cut(s) 10, 73
BseJI GATNNNNATC 2 cut(s) 72, 78
BseLI CCNNNNNNNGG 3 cut(s) 206, 273, 306
BsePI GCGCGC 1 cut(s) 262
BseXI GCAGC 1 cut(s) 251
BseYI CCCAGC 1 cut(s) 342
Bsh1236I CGCG 3 cut(s) 197, 232, 264
BshFI GGCC 2 cut(s) 277, 324
BsiHKAI GWGCWC 1 cut(s) 219
BsiSI CCGG 3 cut(s) 95, 267, 278
BslI CCNNNNNNNGG 3 cut(s) 206, 273, 306
BsnI GGCC 2 cut(s) 277, 324
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 3 cut(s) 34, 73, 189
BspANI GGCC 2 cut(s) 277, 324
BspFNI CGCG 3 cut(s) 197, 232, 264
BspLI GGNNCC 1 cut(s) 276
BspPI GGATC 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 277
BssAI RCCGGY 1 cut(s) 277
BssECI CCNNGG 1 cut(s) 267
BssHII GCGCGC 1 cut(s) 262
BssMI GATC 3 cut(s) 34, 73, 189
BssNI GRCGYC 1 cut(s) 168
Bst4CI ACNGT 3 cut(s) 331, 377, 393
BstACI GRCGYC 1 cut(s) 168
BstBAI YACGTR 1 cut(s) 289
BstC8I GCNNGC 3 cut(s) 264, 279, 283
BstF5I GGATG 2 cut(s) 10, 73
BstFNI CGCG 3 cut(s) 197, 232, 264
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 5 cut(s) 135, 199, 239, 264, 266
BstKTI GATC 3 cut(s) 37, 76, 192
BstMBI GATC 3 cut(s) 34, 73, 189
BstMWI GCNNNNNNNGC 2 cut(s) 139, 343
BstNSI RCATGY 1 cut(s) 285
BstSCI CCNGG 1 cut(s) 266
BstUI CGCG 3 cut(s) 197, 232, 264
BstV1I GCAGC 1 cut(s) 251
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 2 cut(s) 277, 324
BtsCI GGATG 2 cut(s) 10, 73
Cac8I GCNNGC 3 cut(s) 264, 279, 283
CfoI GCGC 5 cut(s) 135, 199, 239, 264, 266
Cfr10I RCCGGY 1 cut(s) 277
Cfr13I GGNCC 2 cut(s) 275, 322
CseI GACGC 2 cut(s) 203, 238
CviAII CATG 2 cut(s) 38, 282
CviJI RGCY 4 cut(s) 90, 277, 324, 346
CviKI_1 RGCY 4 cut(s) 90, 277, 324, 346
DpnI GATC 3 cut(s) 36, 75, 191
DpnII GATC 3 cut(s) 34, 73, 189
Eco72I CACGTG 1 cut(s) 289
EcoRI GAATTC 1 cut(s) 316
FaeI CATG 2 cut(s) 41, 285
FaiI YATR 2 cut(s) 39, 283
FatI CATG 2 cut(s) 37, 281
Fnu4HI GCNGC 1 cut(s) 240
FokI GGATG 2 cut(s) 17, 80
Fsp4HI GCNGC 1 cut(s) 240
GlaI GCGC 5 cut(s) 134, 198, 238, 263, 265
GluI GCNGC 1 cut(s) 240
GsaI CCCAGC 1 cut(s) 346
HaeII RGCGCY 1 cut(s) 136
HaeIII GGCC 2 cut(s) 277, 324
HapII CCGG 3 cut(s) 95, 267, 278
HgaI GACGC 2 cut(s) 203, 238
HhaI GCGC 5 cut(s) 135, 199, 239, 264, 266
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 2 cut(s) 41, 285
Hin6I GCGC 5 cut(s) 133, 197, 237, 262, 264
HinP1I GCGC 5 cut(s) 133, 197, 237, 262, 264
HinfI GANTC 2 cut(s) 147, 293
HpaII CCGG 3 cut(s) 95, 267, 278
Hpy166II GTNNAC 1 cut(s) 389
Hpy8I GTNNAC 1 cut(s) 389
Hpy99I CGWCG 3 cut(s) 170, 197, 232
HpyAV CCTTC 1 cut(s) 358
HpyCH4III ACNGT 3 cut(s) 331, 377, 393
HpyCH4IV ACGT 3 cut(s) 159, 168, 288
HpyCH4V TGCA 3 cut(s) 8, 179, 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 343
HpySE526I ACGT 3 cut(s) 159, 168, 288
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 2 cut(s) 41, 285
HspAI GCGC 5 cut(s) 133, 197, 237, 262, 264
KroI GCCGGC 1 cut(s) 277
KroNI GCCGGC 1 cut(s) 279
Kzo9I GATC 3 cut(s) 34, 73, 189
LmnI GCTCC 2 cut(s) 87, 214
LpnPI CCDG 5 cut(s) 16, 108, 280, 291, 356
Lsp1109I GCAGC 1 cut(s) 251
MaeII ACGT 3 cut(s) 159, 168, 288
MalI GATC 3 cut(s) 36, 75, 191
MboI GATC 3 cut(s) 34, 73, 189
MboII GAAGA 1 cut(s) 288
MfeI CAATTG 1 cut(s) 381
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 3 cut(s) 316, 362, 381
MluI ACGCGT 1 cut(s) 230
MmeI TCCRAC 1 cut(s) 65
MnlI CCTC 2 cut(s) 19, 58
MroNI GCCGGC 1 cut(s) 277
MseI TTAA 2 cut(s) 54, 111
MspI CCGG 3 cut(s) 95, 267, 278
MspR9I CCNGG 1 cut(s) 268
MunI CAATTG 1 cut(s) 381
MvnI CGCG 3 cut(s) 197, 232, 264
MwoI GCNNNNNNNGC 2 cut(s) 139, 343
NaeI GCCGGC 1 cut(s) 279
NciI CCSGG 1 cut(s) 268
NdeII GATC 3 cut(s) 34, 73, 189
NgoMIV GCCGGC 1 cut(s) 277
NlaIII CATG 2 cut(s) 41, 285
NlaIV GGNNCC 1 cut(s) 276
NspI RCATGY 1 cut(s) 285
PaeI GCATGC 1 cut(s) 285
PauI GCGCGC 1 cut(s) 262
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PdiI GCCGGC 1 cut(s) 279
PfeI GAWTC 2 cut(s) 147, 293
PflFI GACNNNGTC 1 cut(s) 123
PkrI GCNGC 1 cut(s) 241
PmaCI CACGTG 1 cut(s) 289
PmlI CACGTG 1 cut(s) 289
Ppu21I YACGTR 1 cut(s) 289
PspCI CACGTG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 342
PspN4I GGNNCC 1 cut(s) 276
PspPI GGNCC 2 cut(s) 275, 322
PsuI RGATCY 1 cut(s) 73
PsyI GACNNNGTC 1 cut(s) 123
PteI GCGCGC 1 cut(s) 262
SaqAI TTAA 2 cut(s) 54, 111
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 3 cut(s) 34, 73, 189
Sau96I GGNCC 2 cut(s) 275, 322
ScrFI CCNGG 1 cut(s) 268
SduI GDGCHC 1 cut(s) 219
SetI ASST 5 cut(s) 92, 162, 171, 222, 291
SphI GCATGC 1 cut(s) 285
Sse9I AATT 3 cut(s) 316, 362, 381
SspI AATATT 1 cut(s) 115
StyD4I CCNGG 1 cut(s) 266
TaaI ACNGT 3 cut(s) 331, 377, 393
TaiI ACGT 3 cut(s) 162, 171, 291
TaqI TCGA 2 cut(s) 192, 227
TasI AATT 3 cut(s) 316, 362, 381
TfiI GAWTC 2 cut(s) 147, 293
Tru1I TTAA 2 cut(s) 54, 111
Tru9I TTAA 2 cut(s) 54, 111
TseI GCWGC 1 cut(s) 239
TspDTI ATGAA 2 cut(s) 340, 386
Tth111I GACNNNGTC 1 cut(s) 123
XapI RAATTY 2 cut(s) 316, 362
XceI RCATGY 1 cut(s) 285
ZraI GACGTC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.