Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003644

Physical Location & Seq

Genomic Coordinates Reverse (-)

30005585 .. 30006656

Gene Structure 1072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G021590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCTACTGTTTCTCGTGTTGGAAAATGGAGGAGAACCATACTTGTCTCAGCATCAGCAGCAGCAGCAGTGGCTTGTCGAAGCTTCCGATCAGACGCCGCCTTAGAGGCTCTAGCCAAAGCCTCCGACGAAAAAGTCCCCAGCTTGCTTCTCTACAACTACCCTTGTTTCTCCGGCGCCTTCTCTCGGCTCAACCTCCCTCTCCTCTCCCTCCCTTTGTCCTCCGTCGAACCCTTCAGATCCCATCCAATCCCTCTCTCTCTAACTTTCTCATCATCCATAAATGCCCTTTCAACTCAATTCTTAGGGTTTTACAGGGTACTCGAGGGCTGGAGAGGTGCTATTTCATTGATTTTCTTGGCCCCAGAGGATTTGCGGTCGAGTTTGCAAGGAGAGCTTCGTGCGAAGGATTGCCCGGACAATCTCACATTTCGAGTGAATACTGAAAAGAGTAGCTCTAGTGCTGTGTATGATTACTTCTCTGCTAAGCTTGCTGATGTTGAATGTCGTAATGGAATGGGTGCATGTTTGTTACAAGTTGAGGACAGGGATCGTGTGGTGATGGTGCTAAGTACATTGAGGATGGAGATCTCCGTCGCTGGAGCTTACCGGATATTAGGGCATTTAATATTGGACTTGGTGAATGGCGCTCAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

219

Amino Acids

23.89

Weight (kDa)

8.64

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09580 AT5G09580
fragaria_vesca	FvH4_1g23320 FvH4_1g23320
malus_domestica	MD10G1056400.v1.1
prunus_persica	Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1
pyrus_communis	pycom10g04330 pycom10g04340
rosa_chinensis	RchiOBHm_Chr2g0118131 RchiOBHm_Chr2g0118141 RchiOBHm_Chr2g0118161
rosa_laevigata	RLG00000018394 RLG00000018395 RLG00000018401
rosa_multiflora	Rmu_sc0001618.1_g000003 Rmu_sc0001618.1_g000008 Rmu_sc0001618.1_g000012 Rmu_sc0009463.1_g000001 Rmu_sc0009463.1_g000017
rosa_roxburghii	Rroxscaffold_2G00125850 Rroxscaffold_2G00125900 Rroxscaffold_3G00234990 Rroxscaffold_4G00309060
rosa_rugosa	Rorug02G0216300 Rorug02G0217100
rosa_samantha	Rh2AG273200 Rh2BG285500 Rh2CG410200 Rh6DG346000 Rh7BG104700
rosa_wichuraiana	Rw2G021570 Rw2G021590 Rw2G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
AccB1I	GGYRCC	1 cut(s)	176
AciI	CCGC	2 cut(s)	99, 376
AclWI	GGATC	2 cut(s)	234, 558
AcuI	CTGAAG	1 cut(s)	220
AcyI	GRCGYC	2 cut(s)	96, 177
AfaI	GTAC	2 cut(s)	321, 574
AfiI	CCNNNNNNNGG	1 cut(s)	186
AgsI	TTSAA	2 cut(s)	294, 503
AluBI	AGCT	6 cut(s)	84, 144, 397, 456, 490, 605
AluI	AGCT	6 cut(s)	84, 144, 397, 456, 490, 605
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	2 cut(s)	234, 558
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	1 cut(s)	360
ApeKI	GCWGC	3 cut(s)	59, 62, 65
AspLEI	GCGC	2 cut(s)	179, 650
AspS9I	GGNCC	1 cut(s)	361
AsuC2I	CCSGG	1 cut(s)	416
AsuHPI	GGTGA	2 cut(s)	571, 652
AvaI	CYCGRG	1 cut(s)	323
BanI	GGYRCC	1 cut(s)	176
BarI	GAAGNNNNNNTAC	2 cut(s)	461, 493
BauI	CACGAG	1 cut(s)	15
BbvI	GCAGC	3 cut(s)	71, 74, 77
BccI	CCATC	3 cut(s)	252, 556, 577
BcnI	CCSGG	1 cut(s)	416
BcoDI	GTCTC	1 cut(s)	52
BfaI	CTAG	2 cut(s)	113, 459
BfoI	RGCGCY	2 cut(s)	180, 651
BglI	GCCNNNNNGGC	1 cut(s)	107
BglII	AGATCT	1 cut(s)	588
BisI	GCNGC	4 cut(s)	60, 63, 66, 99
BlpI	GCTNAGC	1 cut(s)	486
BlsI	GCNGC	4 cut(s)	61, 64, 67, 100
Bme1390I	CCNGG	1 cut(s)	416
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	361
BmiI	GGNNCC	2 cut(s)	178, 363
BmrFI	CCNGG	1 cut(s)	416
BmsI	GCATC	1 cut(s)	62
BpmI	CTGGAG	2 cut(s)	352, 621
Bpu1102I	GCTNAGC	1 cut(s)	486
BpuMI	CCSGG	1 cut(s)	416
BsaBI	GATNNNNATC	1 cut(s)	587
BsaHI	GRCGYC	2 cut(s)	96, 177
BsaWI	WCCGGW	1 cut(s)	609
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse8I	GATNNNNATC	1 cut(s)	587
BseGI	GGATG	3 cut(s)	244, 275, 588
BseJI	GATNNNNATC	1 cut(s)	587
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMII	CTCAG	1 cut(s)	63
BseRI	GAGGAG	2 cut(s)	46, 194
BseXI	GCAGC	3 cut(s)	71, 74, 77
BseYI	CCCAGC	1 cut(s)	140
Bsh1285I	CGRYCG	1 cut(s)	380
BshFI	GGCC	1 cut(s)	362
BshNI	GGYRCC	1 cut(s)	176
BsiEI	CGRYCG	1 cut(s)	380
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	3 cut(s)	174, 416, 610
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	362
BsoBI	CYCGRG	1 cut(s)	323
Bsp143I	GATC	4 cut(s)	89, 239, 550, 588
Bsp1720I	GCTNAGC	1 cut(s)	486
BspACI	CCGC	2 cut(s)	99, 376
BspANI	GGCC	1 cut(s)	362
BspCNI	CTCAG	1 cut(s)	62
BspLI	GGNNCC	2 cut(s)	178, 363
BspPI	GGATC	2 cut(s)	234, 558
BspT107I	GGYRCC	1 cut(s)	176
BssMI	GATC	4 cut(s)	89, 239, 550, 588
BssNI	GRCGYC	2 cut(s)	96, 177
BssSI	CACGAG	1 cut(s)	15
Bst2BI	CACGAG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	10
BstACI	GRCGYC	2 cut(s)	96, 177
BstC8I	GCNNGC	2 cut(s)	146, 492
BstDEI	CTNAG	5 cut(s)	49, 103, 304, 486, 569
BstF5I	GGATG	3 cut(s)	244, 275, 588
BstH2I	RGCGCY	2 cut(s)	180, 651
BstHHI	GCGC	2 cut(s)	179, 650
BstKTI	GATC	4 cut(s)	92, 242, 553, 591
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	4 cut(s)	89, 239, 550, 588
BstMCI	CGRYCG	1 cut(s)	380
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 65, 71, 107, 394, 491
BstNSI	RCATGY	1 cut(s)	528
BstSCI	CCNGG	1 cut(s)	414
BstV1I	GCAGC	3 cut(s)	71, 74, 77
BstX2I	RGATCY	2 cut(s)	239, 588
BstYI	RGATCY	2 cut(s)	239, 588
BsuRI	GGCC	1 cut(s)	362
BtsCI	GGATG	3 cut(s)	244, 275, 588
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	2 cut(s)	146, 492
CfoI	GCGC	2 cut(s)	179, 650
Cfr13I	GGNCC	1 cut(s)	361
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	2 cut(s)	320, 573
CviAII	CATG	1 cut(s)	525
CviQI	GTAC	2 cut(s)	320, 573
DdeI	CTNAG	5 cut(s)	49, 103, 304, 486, 569
DinI	GGCGCC	1 cut(s)	178
DpnI	GATC	4 cut(s)	91, 241, 552, 590
DpnII	GATC	4 cut(s)	89, 239, 550, 588
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	220
Eco88I	CYCGRG	1 cut(s)	323
EgeI	GGCGCC	1 cut(s)	178
EheI	GGCGCC	1 cut(s)	178
FaeI	CATG	1 cut(s)	528
FaiI	YATR	4 cut(s)	41, 281, 471, 526
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	1 cut(s)	524
Fnu4HI	GCNGC	4 cut(s)	60, 63, 66, 99
FokI	GGATG	3 cut(s)	231, 262, 595
Fsp4HI	GCNGC	4 cut(s)	60, 63, 66, 99
FspBI	CTAG	2 cut(s)	113, 459
GlaI	GCGC	2 cut(s)	178, 649
GluI	GCNGC	4 cut(s)	60, 63, 66, 99
GsaI	CCCAGC	1 cut(s)	144
GsuI	CTGGAG	2 cut(s)	352, 621
HaeII	RGCGCY	2 cut(s)	180, 651
HaeIII	GGCC	1 cut(s)	362
HapII	CCGG	3 cut(s)	174, 416, 610
HgaI	GACGC	1 cut(s)	104
HhaI	GCGC	2 cut(s)	179, 650
Hin1I	GRCGYC	2 cut(s)	96, 177
Hin1II	CATG	1 cut(s)	528
Hin6I	GCGC	2 cut(s)	177, 648
HinP1I	GCGC	2 cut(s)	177, 648
HindIII	AAGCTT	2 cut(s)	82, 488
HpaII	CCGG	3 cut(s)	174, 416, 610
HphI	GGTGA	2 cut(s)	571, 652
Hpy188I	TCNGA	4 cut(s)	89, 94, 127, 239
Hpy99I	CGWCG	3 cut(s)	131, 230, 599
HpyAV	CCTTC	3 cut(s)	190, 244, 400
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4V	TGCA	2 cut(s)	388, 524
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 65, 71, 107, 394, 491
HpyF3I	CTNAG	5 cut(s)	49, 103, 304, 486, 569
Hsp92I	GRCGYC	2 cut(s)	96, 177
Hsp92II	CATG	1 cut(s)	528
HspAI	GCGC	2 cut(s)	177, 648
KasI	GGCGCC	1 cut(s)	176
Kzo9I	GATC	4 cut(s)	89, 239, 550, 588
LmnI	GCTCC	1 cut(s)	602
LpnPI	CCDG	9 cut(s)	154, 187, 301, 316, 378, 429, 532, 585, 623
Lsp1109I	GCAGC	3 cut(s)	71, 74, 77
LweI	GCATC	1 cut(s)	62
MaeI	CTAG	2 cut(s)	113, 459
MaeIII	GTNAC	1 cut(s)	531
MalI	GATC	4 cut(s)	91, 241, 552, 590
MboI	GATC	4 cut(s)	89, 239, 550, 588
MflI	RGATCY	2 cut(s)	239, 588
MluCI	AATT	1 cut(s)	299
Mly113I	GGCGCC	1 cut(s)	177
MmeI	TCCRAC	1 cut(s)	150
MseI	TTAA	1 cut(s)	626
MspI	CCGG	3 cut(s)	174, 416, 610
MspR9I	CCNGG	1 cut(s)	416
MwoI	GCNNNNNNNGC	6 cut(s)	59, 65, 71, 107, 394, 491
NarI	GGCGCC	1 cut(s)	177
NciI	CCSGG	1 cut(s)	416
NdeII	GATC	4 cut(s)	89, 239, 550, 588
NlaIII	CATG	1 cut(s)	528
NlaIV	GGNNCC	2 cut(s)	178, 363
NmeAIII	GCCGAG	1 cut(s)	166
NspI	RCATGY	1 cut(s)	528
PaeR7I	CTCGAG	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	1 cut(s)	85
PkrI	GCNGC	4 cut(s)	61, 64, 67, 100
PluTI	GGCGCC	1 cut(s)	180
PspFI	CCCAGC	1 cut(s)	140
PspN4I	GGNNCC	2 cut(s)	178, 363
PspPI	GGNCC	1 cut(s)	361
PspXI	VCTCGAGB	1 cut(s)	323
PsuI	RGATCY	2 cut(s)	239, 588
RsaI	GTAC	2 cut(s)	321, 574
RsaNI	GTAC	2 cut(s)	320, 573
SaqAI	TTAA	1 cut(s)	626
SatI	GCNGC	4 cut(s)	60, 63, 66, 99
Sau3AI	GATC	4 cut(s)	89, 239, 550, 588
Sau96I	GGNCC	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	416
SetI	ASST	8 cut(s)	86, 146, 198, 340, 399, 458, 492, 607
SfaNI	GCATC	1 cut(s)	62
SfoI	GGCGCC	1 cut(s)	178
Sfr274I	CTCGAG	1 cut(s)	323
SlaI	CTCGAG	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	1 cut(s)	299
SsiI	CCGC	2 cut(s)	99, 376
SspDI	GGCGCC	1 cut(s)	176
SspI	AATATT	1 cut(s)	630
SspMI	CTAG	2 cut(s)	113, 459
StyD4I	CCNGG	1 cut(s)	414
TaaI	ACNGT	1 cut(s)	10
TaqI	TCGA	5 cut(s)	79, 228, 324, 380, 433
TasI	AATT	1 cut(s)	299
TatI	WGTACW	1 cut(s)	572
TauI	GCSGC	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	626
Tru9I	TTAA	1 cut(s)	626
TscAI	CASTG	1 cut(s)	75
TseI	GCWGC	3 cut(s)	59, 62, 65
TspDTI	ATGAA	1 cut(s)	336
TspGWI	ACGGA	2 cut(s)	214, 583
TspRI	CASTG	1 cut(s)	75
XceI	RCATGY	1 cut(s)	528
XhoI	CTCGAG	1 cut(s)	323
XspI	CTAG	2 cut(s)	113, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.