Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003644

Physical Location & Seq

Genomic Coordinates Forward (+)

4579287 .. 4581646

Gene Structure 2360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g04340.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGTGCTGAAGTACATTGAGGATGGAGATCTCCGTCGGTGGAGCTTGCCCGACATTAAGGCATTTAACATTGGACTTGGCGAATGGCGCTCCAAGTTAAATTGTGTTACTAATCCGTACATGTATGAACAGTTACTGGAAATAAATGCTGTGGATGTAATTGCCAAGGGGATGTCTTATATTTCTGCTCGCCAGAAAGCTGCAAACAAGTTACTGGATAAGGTTTTGAAAATAAGGCTGGGCAGAGGGTTTTATGGGGAGTGTCTGGGAGTTAGAGCTGACGAGAATTCTGAGTTAAGTGATGAAATTGCCAAGAAGCTTAGTGTACAAAGTGCCGCTGCTGGTCTTAGGCCTATAGGAGCAGTTATATTCATGCAACGGAGAAACCTGAAAATGTGTTTAAGGAGTACTGATACTGCTACTGATACCTCTGAAGTTGCAAAGGCATTTGGAGGAGGAGGCTCCCCAAGTTCTAGTTCTTTTATCATAAGAATGGATGAGTACAATCAGTGGGTTTCAGGATATTCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

19.68

Weight (kDa)

9.13

Isoelectric Point (pI)

55.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09580 AT5G09580
fragaria_vesca	FvH4_1g23320 FvH4_1g23320
malus_domestica	MD10G1056400.v1.1
prunus_persica	Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1 Prupe.8G074100_v2.0.a1
pyrus_communis	pycom10g04330 pycom10g04340
rosa_chinensis	RchiOBHm_Chr2g0118131 RchiOBHm_Chr2g0118141 RchiOBHm_Chr2g0118161
rosa_laevigata	RLG00000018394 RLG00000018395 RLG00000018401
rosa_multiflora	Rmu_sc0001618.1_g000003 Rmu_sc0001618.1_g000008 Rmu_sc0001618.1_g000012 Rmu_sc0009463.1_g000001 Rmu_sc0009463.1_g000017
rosa_roxburghii	Rroxscaffold_2G00125850 Rroxscaffold_2G00125900 Rroxscaffold_3G00234990 Rroxscaffold_4G00309060
rosa_rugosa	Rorug02G0216300 Rorug02G0217100
rosa_samantha	Rh2AG273200 Rh2BG285500 Rh2CG410200 Rh6DG346000 Rh7BG104700
rosa_wichuraiana	Rw2G021570 Rw2G021590 Rw2G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	286
AcuI	CTGAAG	2 cut(s)	29, 453
AfaI	GTAC	5 cut(s)	14, 119, 327, 409, 503
AflIII	ACRYGT	1 cut(s)	120
AgsI	TTSAA	2 cut(s)	229, 528
AjuI	GAANNNNNNNTTGG	2 cut(s)	460, 492
AluBI	AGCT	4 cut(s)	45, 200, 278, 319
AluI	AGCT	4 cut(s)	45, 200, 278, 319
AlwNI	CAGNNNCTG	1 cut(s)	136
AoxI	GGCC	1 cut(s)	350
ApeKI	GCWGC	2 cut(s)	200, 338
ApoI	RAATTY	1 cut(s)	286
AspLEI	GCGC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	187, 325
BccI	CCATC	1 cut(s)	17
BfaI	CTAG	1 cut(s)	474
BfmI	CTRYAG	1 cut(s)	354
BfoI	RGCGCY	1 cut(s)	91
BglII	AGATCT	1 cut(s)	28
BisI	GCNGC	3 cut(s)	201, 336, 339
BlsI	GCNGC	3 cut(s)	202, 337, 340
BmcAI	AGTACT	1 cut(s)	409
BmiI	GGNNCC	1 cut(s)	463
BsaBI	GATNNNNATC	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	165
Bse1I	ACTGG	2 cut(s)	141, 219
Bse8I	GATNNNNATC	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	4 cut(s)	28, 160, 177, 502
BseJI	GATNNNNATC	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	141, 219
BseRI	GAGGAG	2 cut(s)	468, 471
BseXI	GCAGC	2 cut(s)	187, 325
BseYI	CCCAGC	1 cut(s)	238
BshFI	GGCC	1 cut(s)	352
BsnI	GGCC	1 cut(s)	352
Bsp1407I	TGTACA	1 cut(s)	325
Bsp143I	GATC	1 cut(s)	28
BspACI	CCGC	1 cut(s)	336
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	463
BsrGI	TGTACA	1 cut(s)	325
BsrI	ACTGG	2 cut(s)	141, 219
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	1 cut(s)	28
BssT1I	CCWWGG	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	132
BstAUI	TGTACA	1 cut(s)	325
BstC8I	GCNNGC	2 cut(s)	47, 190
BstDEI	CTNAG	3 cut(s)	291, 320, 347
BstF5I	GGATG	4 cut(s)	28, 160, 177, 502
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	1 cut(s)	87
BstNSI	RCATGY	1 cut(s)	124
BstSFI	CTRYAG	1 cut(s)	354
BstV1I	GCAGC	2 cut(s)	187, 325
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	352
BtsCI	GGATG	4 cut(s)	28, 160, 177, 502
BtsIMutI	CAGTG	1 cut(s)	515
Cac8I	GCNNGC	2 cut(s)	47, 190
CaiI	CAGNNNCTG	1 cut(s)	136
CfoI	GCGC	1 cut(s)	90
Csp6I	GTAC	5 cut(s)	13, 118, 326, 408, 502
CviAII	CATG	2 cut(s)	121, 373
CviJI	RGCY	7 cut(s)	45, 200, 238, 278, 319, 352, 462
CviKI_1	RGCY	7 cut(s)	45, 200, 238, 278, 319, 352, 462
CviQI	GTAC	5 cut(s)	13, 118, 326, 408, 502
DdeI	CTNAG	3 cut(s)	291, 320, 347
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	165
Eco147I	AGGCCT	1 cut(s)	352
Eco57I	CTGAAG	2 cut(s)	29, 453
EcoRI	GAATTC	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	2 cut(s)	124, 376
FaiI	YATR	8 cut(s)	122, 126, 180, 255, 356, 368, 374, 488
FatI	CATG	2 cut(s)	120, 372
Fnu4HI	GCNGC	3 cut(s)	201, 336, 339
FokI	GGATG	4 cut(s)	35, 167, 184, 509
Fsp4HI	GCNGC	3 cut(s)	201, 336, 339
FspBI	CTAG	1 cut(s)	474
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	3 cut(s)	201, 336, 339
GsaI	CCCAGC	1 cut(s)	242
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	1 cut(s)	352
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	2 cut(s)	124, 376
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	317
Hpy166II	GTNNAC	1 cut(s)	326
Hpy188I	TCNGA	2 cut(s)	292, 433
Hpy188III	TCNNGA	2 cut(s)	519, 528
Hpy8I	GTNNAC	1 cut(s)	326
Hpy99I	CGWCG	1 cut(s)	39
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4V	TGCA	3 cut(s)	203, 376, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	87
HpyF3I	CTNAG	3 cut(s)	291, 320, 347
Hsp92II	CATG	2 cut(s)	124, 376
HspAI	GCGC	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	28
LmnI	GCTCC	4 cut(s)	42, 95, 359, 467
LpnPI	CCDG	8 cut(s)	122, 200, 206, 224, 251, 327, 401, 504
Lsp1109I	GCAGC	2 cut(s)	187, 325
MaeI	CTAG	1 cut(s)	474
MaeIII	GTNAC	3 cut(s)	106, 132, 210
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MflI	RGATCY	1 cut(s)	28
MluCI	AATT	4 cut(s)	100, 159, 286, 306
MnlI	CCTC	6 cut(s)	13, 239, 439, 446, 449, 452
MseI	TTAA	5 cut(s)	57, 66, 98, 296, 401
MslI	CAYNNNNRTG	1 cut(s)	491
MspA1I	CMGCKG	1 cut(s)	338
MwoI	GCNNNNNNNGC	1 cut(s)	87
NdeII	GATC	1 cut(s)	28
NlaIII	CATG	2 cut(s)	124, 376
NlaIV	GGNNCC	1 cut(s)	463
NspI	RCATGY	1 cut(s)	124
PceI	AGGCCT	1 cut(s)	352
PciI	ACATGT	1 cut(s)	120
PkrI	GCNGC	3 cut(s)	202, 337, 340
PscI	ACATGT	1 cut(s)	120
PspFI	CCCAGC	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	463
PstNI	CAGNNNCTG	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	5 cut(s)	14, 119, 327, 409, 503
RsaNI	GTAC	5 cut(s)	13, 118, 326, 408, 502
RseI	CAYNNNNRTG	1 cut(s)	491
SaqAI	TTAA	5 cut(s)	57, 66, 98, 296, 401
SatI	GCNGC	3 cut(s)	201, 336, 339
Sau3AI	GATC	1 cut(s)	28
ScaI	AGTACT	1 cut(s)	409
SetI	ASST	7 cut(s)	47, 202, 225, 280, 321, 390, 431
SfcI	CTRYAG	1 cut(s)	354
SmiMI	CAYNNNNRTG	1 cut(s)	491
Sse9I	AATT	4 cut(s)	100, 159, 286, 306
SseBI	AGGCCT	1 cut(s)	352
SsiI	CCGC	1 cut(s)	336
SspMI	CTAG	1 cut(s)	474
StuI	AGGCCT	1 cut(s)	352
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	132
TasI	AATT	4 cut(s)	100, 159, 286, 306
TatI	WGTACW	4 cut(s)	12, 325, 407, 501
TauI	GCSGC	1 cut(s)	338
Tru1I	TTAA	5 cut(s)	57, 66, 98, 296, 401
Tru9I	TTAA	5 cut(s)	57, 66, 98, 296, 401
TscAI	CASTG	1 cut(s)	515
TseI	GCWGC	2 cut(s)	200, 338
TspDTI	ATGAA	3 cut(s)	141, 318, 361
TspGWI	ACGGA	3 cut(s)	23, 105, 394
TspRI	CASTG	1 cut(s)	515
XapI	RAATTY	1 cut(s)	286
XceI	RCATGY	1 cut(s)	124
XspI	CTAG	1 cut(s)	474
ZrmI	AGTACT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.