Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001463

Physical Location & Seq

Genomic Coordinates Forward (+)

4050402 .. 4051980

Gene Structure 1579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g05000.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCTCGCTTTCTCCTTTCAATTATCTTTGCCTCTCTCTTAGCCCTAGCTGCTGTCCATGAAACTCAAGCTATTGAGTACATCGTCGAAAACCGGGCTCTCAACACCCCTGGGGGAATCCGTTTTAGAGACGAGCTGGGCGTGGACTACACCAAGCAAAAAATGAGAGACGCCACTGATTTCATCTGGAACCTCTTTAAGGAAACTACAGCTGCAGAGAGAAGGGACACCCCACGCATAAGCTTGTTCGTCGAAGACATAGATGGCATTGCAGCTTCCAGCGAAGACATTATTCATTTTTCAGCCAAGTACATCGAGGGACTAGCGGCAGACAAACTAAAAAACGACTTCAATGGGATACTTTACCATGAGATCACACACTCATTGCAGAGGAATGGAAAAGGTCAAGCTCCTCTTGGACTGGTAGAAGGGATTGCAGACTTTGTGAGCTTCTTGAAGGCTGGTTTTATATACGACGGCTATTTAAACCCCGGTGATGGTAACAGTTGGGACGAGGGTTATGGCGTAACCGCACGGTTCCTGGAGTATTGCGAAGGCCTTAAAGACGGGTTTGTTGCAGAACTCAACAAGAAGATGATAGATGGTTATAGCGACGATTTTTTCAACCAGTTGCTGGGGAAGACAGTTAATCAGCTATGGACCGACTACAAAGCCAAATATGCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSP

Protein Analysis

230

Amino Acids

25.74

Weight (kDa)

4.9

Isoelectric Point (pI)

18.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BSP	PF04450	24 - 223	1.2e-61	Peptidase of plants and bacteria

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001463)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05000 FvH4_2g05010
prunus_persica	Prupe.3G126200_v2.0.a1 Prupe.6G105600_v2.0.a1 Prupe.6G105700_v2.0.a1 Prupe.8G136400_v2.0.a1 Prupe.8G136500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0244521 RchiOBHm_Chr6g0254761 RchiOBHm_Chr6g0254791 RchiOBHm_Chr6g0254801 RchiOBHm_Chr6g0254841
rosa_laevigata	RLG00000014888 RLG00000014889 RLG00000014890 RLG00000014935
rosa_multiflora	Rmu_sc0000016.1_g000001 Rmu_sc0003679.1_g000012 Rmu_sc0007716.1_g000005 Rmu_sc0007716.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210520 Rroxscaffold_7G00210530 Rroxscaffold_7G00210540 Rroxscaffold_7G00215780
rosa_rugosa	Rorug05G0550900 Rorug05G0554700 Rorug05G0554800 Rorug05G0554800
rosa_samantha	Rh6AG024700 Rh6AG072000 Rh6AG072100 Rh6BG019700 Rh6BG060200 Rh6BG064100 Rh6BG064200 Rh6BG064300 Rh6CG060000 Rh6CG060100 Rh6CG063500 Rh6CG063600 Rh6CG064100 Rh6CG064200 Rh6DG057100 Rh6DG060600 Rh6DG060700 Rh6DG061200 Rh6DG061300 Rh7CG516500
rosa_wichuraiana	Rw6G002010 Rw6G006290 Rw6G006300 Rw6G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	634
AciI	CCGC	2 cut(s)	326, 531
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	2 cut(s)	80, 311
AfiI	CCNNNNNNNGG	3 cut(s)	199, 497, 634
AgsI	TTSAA	4 cut(s)	21, 352, 457, 625
AjnI	CCWGG	2 cut(s)	109, 540
AluBI	AGCT	9 cut(s)	50, 71, 136, 212, 243, 275, 410, 450, 655
AluI	AGCT	9 cut(s)	50, 71, 136, 212, 243, 275, 410, 450, 655
Alw26I	GTCTC	2 cut(s)	123, 162
AlwNI	CAGNNNCTG	1 cut(s)	634
AoxI	GGCC	1 cut(s)	556
ApeKI	GCWGC	3 cut(s)	50, 212, 272
AspS9I	GGNCC	1 cut(s)	660
AsuC2I	CCSGG	2 cut(s)	95, 492
AsuHPI	GGTGA	1 cut(s)	506
AvaII	GGWCC	1 cut(s)	660
BanII	GRGCYC	1 cut(s)	100
BbsI	GAAGAC	3 cut(s)	261, 291, 647
BbvI	GCAGC	3 cut(s)	37, 199, 284
BccI	CCATC	3 cut(s)	257, 491, 596
BceAI	ACGGC	1 cut(s)	493
BciT130I	CCWGG	2 cut(s)	111, 542
BciVI	GTATCC	1 cut(s)	351
BcnI	CCSGG	2 cut(s)	95, 492
BcoDI	GTCTC	2 cut(s)	123, 162
BfaI	CTAG	2 cut(s)	47, 323
BfmI	CTRYAG	2 cut(s)	207, 213
BfuI	GTATCC	1 cut(s)	351
BisI	GCNGC	4 cut(s)	51, 213, 273, 327
BlsI	GCNGC	4 cut(s)	52, 214, 274, 328
Bme1390I	CCNGG	4 cut(s)	95, 111, 492, 542
Bme18I	GGWCC	1 cut(s)	660
BmgT120I	GGNCC	1 cut(s)	660
BmiI	GGNNCC	2 cut(s)	191, 539
BmrFI	CCNGG	4 cut(s)	95, 111, 492, 542
BpiI	GAAGAC	3 cut(s)	261, 291, 647
BpmI	CTGGAG	1 cut(s)	563
BpuEI	CTTGAG	1 cut(s)	51
BpuMI	CCSGG	2 cut(s)	95, 492
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	3 cut(s)	109, 110, 490
Bsc4I	CCNNNNNNNGG	3 cut(s)	199, 497, 634
Bse1I	ACTGG	2 cut(s)	426, 628
Bse3DI	GCAATG	2 cut(s)	267, 383
BseBI	CCWGG	2 cut(s)	111, 542
BseDI	CCNNGG	3 cut(s)	109, 110, 490
BseLI	CCNNNNNNNGG	3 cut(s)	199, 497, 634
BseMI	GCAATG	2 cut(s)	267, 383
BseNI	ACTGG	2 cut(s)	426, 628
BseRI	GAGGAG	1 cut(s)	402
BseXI	GCAGC	3 cut(s)	37, 199, 284
BseYI	CCCAGC	2 cut(s)	136, 634
BshFI	GGCC	1 cut(s)	558
BsiSI	CCGG	2 cut(s)	94, 492
BslFI	GGGAC	3 cut(s)	239, 333, 524
BslI	CCNNNNNNNGG	3 cut(s)	199, 497, 634
BsmAI	GTCTC	2 cut(s)	123, 162
BsmBI	CGTCTC	2 cut(s)	123, 162
BsmFI	GGGAC	3 cut(s)	239, 333, 524
BsnI	GGCC	1 cut(s)	558
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	1 cut(s)	372
BspACI	CCGC	2 cut(s)	326, 531
BspANI	GGCC	1 cut(s)	558
BspLI	GGNNCC	2 cut(s)	191, 539
BspMAI	CTGCAG	1 cut(s)	217
BsrDI	GCAATG	2 cut(s)	267, 383
BsrI	ACTGG	2 cut(s)	426, 628
BssECI	CCNNGG	3 cut(s)	109, 110, 490
BssMI	GATC	1 cut(s)	372
BssNI	GRCGYC	1 cut(s)	171
Bst2UI	CCWGG	2 cut(s)	111, 542
Bst4CI	ACNGT	3 cut(s)	506, 537, 646
BstACI	GRCGYC	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	40
BstENI	CCTNNNNNAGG	1 cut(s)	197
BstKTI	GATC	1 cut(s)	375
BstMAI	GTCTC	2 cut(s)	123, 162
BstMBI	GATC	1 cut(s)	372
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 680
BstNI	CCWGG	2 cut(s)	111, 542
BstSCI	CCNGG	4 cut(s)	93, 109, 490, 540
BstSFI	CTRYAG	2 cut(s)	207, 213
BstV1I	GCAGC	3 cut(s)	37, 199, 284
BstV2I	GAAGAC	3 cut(s)	261, 291, 647
BsuI	GTATCC	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	558
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	634
Cfr13I	GGNCC	1 cut(s)	660
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	79, 310
CviAII	CATG	2 cut(s)	59, 368
CviQI	GTAC	2 cut(s)	79, 310
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	1 cut(s)	374
DpnII	GATC	1 cut(s)	372
DraI	TTTAAA	1 cut(s)	486
Eco147I	AGGCCT	1 cut(s)	558
Eco24I	GRGCYC	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	660
EcoNI	CCTNNNNNAGG	1 cut(s)	197
EcoRII	CCWGG	2 cut(s)	109, 540
EcoT38I	GRGCYC	1 cut(s)	100
Esp3I	CGTCTC	2 cut(s)	123, 162
FaeI	CATG	2 cut(s)	62, 371
FalI	AAGNNNNNCTT	2 cut(s)	399, 431
FaqI	GGGAC	3 cut(s)	239, 333, 524
FatI	CATG	2 cut(s)	58, 367
Fnu4HI	GCNGC	4 cut(s)	51, 213, 273, 327
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	4 cut(s)	51, 213, 273, 327
FspBI	CTAG	2 cut(s)	47, 323
GluI	GCNGC	4 cut(s)	51, 213, 273, 327
GsaI	CCCAGC	2 cut(s)	140, 638
GsuI	CTGGAG	1 cut(s)	563
HaeIII	GGCC	1 cut(s)	558
HapII	CCGG	2 cut(s)	94, 492
HgaI	GACGC	1 cut(s)	179
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	2 cut(s)	62, 371
HindIII	AAGCTT	1 cut(s)	241
HinfI	GANTC	1 cut(s)	117
HpaII	CCGG	2 cut(s)	94, 492
HphI	GGTGA	1 cut(s)	506
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188III	TCNNGA	2 cut(s)	187, 454
Hpy8I	GTNNAC	1 cut(s)	145
Hpy99I	CGWCG	4 cut(s)	89, 254, 479, 617
HpyAV	CCTTC	4 cut(s)	216, 422, 451, 548
HpyCH4III	ACNGT	3 cut(s)	506, 537, 646
HpyCH4V	TGCA	6 cut(s)	215, 272, 388, 437, 578, 683
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 680
HpyF3I	CTNAG	1 cut(s)	40
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	2 cut(s)	62, 371
Kzo9I	GATC	1 cut(s)	372
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	3 cut(s)	37, 199, 284
MaeI	CTAG	2 cut(s)	47, 323
MaeIII	GTNAC	2 cut(s)	500, 526
MalI	GATC	1 cut(s)	374
MboI	GATC	1 cut(s)	372
MboII	GAAGA	4 cut(s)	266, 296, 604, 652
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	1 cut(s)	21
MnlI	CCTC	6 cut(s)	43, 203, 310, 384, 423, 508
MseI	TTAA	4 cut(s)	198, 485, 561, 648
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	2 cut(s)	94, 492
MspR9I	CCNGG	4 cut(s)	95, 111, 492, 542
MvaI	CCWGG	2 cut(s)	111, 542
MwoI	GCNNNNNNNGC	2 cut(s)	50, 680
NciI	CCSGG	2 cut(s)	95, 492
NdeII	GATC	1 cut(s)	372
NlaIII	CATG	2 cut(s)	62, 371
NlaIV	GGNNCC	2 cut(s)	191, 539
PasI	CCCWGGG	1 cut(s)	110
PceI	AGGCCT	1 cut(s)	558
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	117
PflMI	CCANNNNNTGG	1 cut(s)	634
PfoI	TCCNGGA	1 cut(s)	540
PkrI	GCNGC	4 cut(s)	52, 214, 274, 328
Psp6I	CCWGG	2 cut(s)	109, 540
PspFI	CCCAGC	2 cut(s)	136, 634
PspGI	CCWGG	2 cut(s)	109, 540
PspN4I	GGNNCC	2 cut(s)	191, 539
PspPI	GGNCC	1 cut(s)	660
PstI	CTGCAG	1 cut(s)	217
PstNI	CAGNNNCTG	1 cut(s)	634
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	2 cut(s)	80, 311
RsaNI	GTAC	2 cut(s)	79, 310
SaqAI	TTAA	4 cut(s)	198, 485, 561, 648
SatI	GCNGC	4 cut(s)	51, 213, 273, 327
Sau3AI	GATC	1 cut(s)	372
Sau96I	GGNCC	1 cut(s)	660
ScrFI	CCNGG	4 cut(s)	95, 111, 492, 542
SduI	GDGCHC	1 cut(s)	100
SfcI	CTRYAG	2 cut(s)	207, 213
SinI	GGWCC	1 cut(s)	660
SmlI	CTYRAG	1 cut(s)	66
SmoI	CTYRAG	1 cut(s)	66
Sse9I	AATT	1 cut(s)	21
SseBI	AGGCCT	1 cut(s)	558
SsiI	CCGC	2 cut(s)	326, 531
SspMI	CTAG	2 cut(s)	47, 323
StuI	AGGCCT	1 cut(s)	558
StyD4I	CCNGG	4 cut(s)	93, 109, 490, 540
TaaI	ACNGT	3 cut(s)	506, 537, 646
TaqI	TCGA	3 cut(s)	87, 252, 315
TaqII	GACCGA	1 cut(s)	677
TasI	AATT	1 cut(s)	21
TatI	WGTACW	2 cut(s)	78, 309
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	4 cut(s)	198, 485, 561, 648
Tru9I	TTAA	4 cut(s)	198, 485, 561, 648
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	3 cut(s)	50, 212, 272
TspDTI	ATGAA	3 cut(s)	75, 172, 284
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	181
Van91I	CCANNNNNTGG	1 cut(s)	634
VpaK11BI	GGWCC	1 cut(s)	660
XagI	CCTNNNNNAGG	1 cut(s)	197
XspI	CTAG	2 cut(s)	47, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.