Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001463

Physical Location & Seq

Genomic Coordinates Reverse (-)

15654789 .. 15656033

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G136400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCTGCTCGCTTTCTCTCTTTTTTCATCCTTGCCTCTTTCCTTGCCCTAGCTTCCTTGCATGGGGGCCATGCTGTCGAATTTGTTGTCGAAAACCGGGCCCCGAACACCCCCGGCGGTATCCGCTTTACAAATGAGCTGGGGTTGGACTACACCCAGCAAACAATGGGAACCGCCACAGATTTCATTTGGAACCTCTTCGCGGAAACTACACCGGCAGATAGAAGGGACGTGCAACGCGTGAGCTTGTTTGTGGAAGACATCGATGGCATTGCATTTTCCAGCAACGATGAGATTCATGTCGGGGCTAAATACATTGAGGGCATACAGGGTGATATCAAAACAGATTTCAATGGGGTACTTTACCATGAGATGACACATTCATGGCAGTGGAATGGACAGGGTCAAGCTCCTGTTGGATTGATAGAAGGGATTGCAGACTTTGTGAGGTTGAAGGCGGATTATGTGCCCAATGGATGGGTAAAGTCGGGTGAAGGTCAAAGGTGGGATGAAGGTTATTCAGTGACTGCAAGGTTCCTGGACTATTGCAATGATCTTCAACAAGGGTTTGTGGCTGAACTGAACAAGAAGATGAGAGATGGCTACAGTGACAACTTCTTTCAGGAGCTGCTTGGGAAGACAGTTGATCAACTGTGGACCGACTACAAAGCTAAATTTGCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSP

Protein Analysis

229

Amino Acids

25.67

Weight (kDa)

4.76

Isoelectric Point (pI)

23.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001463)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05000 FvH4_2g05010
prunus_persica	Prupe.3G126200_v2.0.a1 Prupe.6G105600_v2.0.a1 Prupe.6G105700_v2.0.a1 Prupe.8G136400_v2.0.a1 Prupe.8G136500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0244521 RchiOBHm_Chr6g0254761 RchiOBHm_Chr6g0254791 RchiOBHm_Chr6g0254801 RchiOBHm_Chr6g0254841
rosa_laevigata	RLG00000014888 RLG00000014889 RLG00000014890 RLG00000014935
rosa_multiflora	Rmu_sc0000016.1_g000001 Rmu_sc0003679.1_g000012 Rmu_sc0007716.1_g000005 Rmu_sc0007716.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210520 Rroxscaffold_7G00210530 Rroxscaffold_7G00210540 Rroxscaffold_7G00215780
rosa_rugosa	Rorug05G0550900 Rorug05G0554700 Rorug05G0554800 Rorug05G0554800
rosa_samantha	Rh6AG024700 Rh6AG072000 Rh6AG072100 Rh6BG019700 Rh6BG060200 Rh6BG064100 Rh6BG064200 Rh6BG064300 Rh6CG060000 Rh6CG060100 Rh6CG063500 Rh6CG063600 Rh6CG064100 Rh6CG064200 Rh6DG057100 Rh6DG060600 Rh6DG060700 Rh6DG061200 Rh6DG061300 Rh7CG516500
rosa_wichuraiana	Rw6G002010 Rw6G006290 Rw6G006300 Rw6G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	477
AccII	CGCG	2 cut(s)	203, 240
AciI	CCGC	5 cut(s)	117, 124, 174, 203, 458
AcsI	RAATTY	2 cut(s)	80, 674
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	3 cut(s)	63, 202, 477
AflIII	ACRYGT	1 cut(s)	238
AgsI	TTSAA	3 cut(s)	352, 454, 560
AjiI	CACGTC	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	537
AluBI	AGCT	6 cut(s)	53, 139, 246, 410, 628, 671
AluI	AGCT	6 cut(s)	53, 139, 246, 410, 628, 671
AlwNI	CAGNNNCTG	2 cut(s)	527, 628
AoxI	GGCC	2 cut(s)	67, 99
ApaI	GGGCCC	1 cut(s)	103
ApeKI	GCWGC	2 cut(s)	5, 628
ApoI	RAATTY	2 cut(s)	80, 674
ArsI	GACNNNNNNTTYG	2 cut(s)	72, 104
Asp700I	GAANNNNTTC	1 cut(s)	197
AspS9I	GGNCC	4 cut(s)	67, 99, 100, 657
AsuC2I	CCSGG	2 cut(s)	98, 114
AsuHPI	GGTGA	2 cut(s)	344, 503
AvaII	GGWCC	1 cut(s)	657
BaeGI	GKGCMC	2 cut(s)	103, 471
BanII	GRGCYC	1 cut(s)	103
BbsI	GAAGAC	2 cut(s)	264, 644
BbvI	GCAGC	1 cut(s)	615
BccI	CCATC	3 cut(s)	260, 471, 593
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BciT130I	CCWGG	1 cut(s)	539
BciVI	GTATCC	1 cut(s)	131
BclI	TGATCA	1 cut(s)	646
BcnI	CCSGG	2 cut(s)	98, 114
BfaI	CTAG	1 cut(s)	50
BfmI	CTRYAG	1 cut(s)	604
BfuI	GTATCC	1 cut(s)	131
BisI	GCNGC	2 cut(s)	6, 629
BlsI	GCNGC	2 cut(s)	7, 630
Bme1390I	CCNGG	3 cut(s)	98, 114, 539
Bme18I	GGWCC	1 cut(s)	657
BmgBI	CACGTC	1 cut(s)	232
BmgT120I	GGNCC	4 cut(s)	67, 99, 100, 657
BmiI	GGNNCC	6 cut(s)	68, 101, 102, 172, 194, 536
BmrFI	CCNGG	3 cut(s)	98, 114, 539
BpiI	GAAGAC	2 cut(s)	264, 644
BpuMI	CCSGG	2 cut(s)	98, 114
Bsa29I	ATCGAT	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 202, 477
Bse118I	RCCGGY	1 cut(s)	214
Bse3DI	GCAATG	2 cut(s)	270, 556
BseBI	CCWGG	1 cut(s)	539
BseCI	ATCGAT	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	112
BseGI	GGATG	3 cut(s)	27, 482, 514
BseLI	CCNNNNNNNGG	3 cut(s)	63, 202, 477
BseMI	GCAATG	2 cut(s)	270, 556
BseSI	GKGCMC	2 cut(s)	103, 471
BseXI	GCAGC	1 cut(s)	615
BseYI	CCCAGC	2 cut(s)	139, 156
Bsh1236I	CGCG	2 cut(s)	203, 240
BshFI	GGCC	2 cut(s)	69, 101
BshVI	ATCGAT	1 cut(s)	264
BsiSI	CCGG	3 cut(s)	97, 114, 215
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	3 cut(s)	63, 202, 477
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	2 cut(s)	69, 101
Bsp120I	GGGCCC	1 cut(s)	99
Bsp1286I	GDGCHC	2 cut(s)	103, 471
Bsp143I	GATC	2 cut(s)	553, 646
BspACI	CCGC	5 cut(s)	117, 124, 174, 203, 458
BspANI	GGCC	2 cut(s)	69, 101
BspDI	ATCGAT	1 cut(s)	264
BspFNI	CGCG	2 cut(s)	203, 240
BspLI	GGNNCC	6 cut(s)	68, 101, 102, 172, 194, 536
BsrDI	GCAATG	2 cut(s)	270, 556
BsrFI	RCCGGY	1 cut(s)	214
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	2 cut(s)	553, 646
Bst2UI	CCWGG	1 cut(s)	539
Bst4CI	ACNGT	3 cut(s)	608, 643, 654
Bst6I	CTCTTC	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	10
BstF5I	GGATG	3 cut(s)	27, 482, 514
BstFNI	CGCG	2 cut(s)	203, 240
BstKTI	GATC	2 cut(s)	556, 649
BstMBI	GATC	2 cut(s)	553, 646
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 677
BstNI	CCWGG	1 cut(s)	539
BstSCI	CCNGG	3 cut(s)	96, 112, 537
BstSFI	CTRYAG	1 cut(s)	604
BstSLI	GKGCMC	2 cut(s)	103, 471
BstUI	CGCG	2 cut(s)	203, 240
BstV1I	GCAGC	1 cut(s)	615
BstV2I	GAAGAC	2 cut(s)	264, 644
Bsu15I	ATCGAT	1 cut(s)	264
BsuI	GTATCC	1 cut(s)	131
BsuRI	GGCC	2 cut(s)	69, 101
BsuTUI	ATCGAT	1 cut(s)	264
BtrI	CACGTC	1 cut(s)	232
BtsCI	GGATG	3 cut(s)	27, 482, 514
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	3 cut(s)	395, 528, 613
Cac8I	GCNNGC	1 cut(s)	10
CaiI	CAGNNNCTG	2 cut(s)	527, 628
Cfr10I	RCCGGY	1 cut(s)	214
Cfr13I	GGNCC	4 cut(s)	67, 99, 100, 657
ClaI	ATCGAT	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	359
CviAII	CATG	5 cut(s)	62, 71, 299, 368, 384
CviQI	GTAC	1 cut(s)	359
DpnI	GATC	2 cut(s)	555, 648
DpnII	GATC	2 cut(s)	553, 646
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
EciI	GGCGGA	1 cut(s)	473
Eco24I	GRGCYC	1 cut(s)	103
Eco32I	GATATC	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	657
EcoO109I	RGGNCCY	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	537
EcoRV	GATATC	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	103
FaeI	CATG	5 cut(s)	65, 74, 302, 371, 387
FaiI	YATR	7 cut(s)	63, 72, 300, 326, 369, 385, 465
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	5 cut(s)	61, 70, 298, 367, 383
FbaI	TGATCA	1 cut(s)	646
Fnu4HI	GCNGC	2 cut(s)	6, 629
FokI	GGATG	3 cut(s)	14, 489, 521
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	2 cut(s)	6, 629
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	2 cut(s)	6, 629
GsaI	CCCAGC	2 cut(s)	143, 160
HaeIII	GGCC	2 cut(s)	69, 101
HapII	CCGG	3 cut(s)	97, 114, 215
Hin1II	CATG	5 cut(s)	65, 74, 302, 371, 387
HinfI	GANTC	1 cut(s)	295
HpaII	CCGG	3 cut(s)	97, 114, 215
HphI	GGTGA	2 cut(s)	344, 503
Hpy166II	GTNNAC	1 cut(s)	657
Hpy188III	TCNNGA	1 cut(s)	623
Hpy8I	GTNNAC	1 cut(s)	657
HpyAV	CCTTC	5 cut(s)	219, 422, 448, 488, 506
HpyCH4III	ACNGT	3 cut(s)	608, 643, 654
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	7 cut(s)	61, 235, 275, 437, 530, 549, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 677
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	5 cut(s)	65, 74, 302, 371, 387
Ksp22I	TGATCA	1 cut(s)	646
Kzo9I	GATC	2 cut(s)	553, 646
LmnI	GCTCC	2 cut(s)	415, 625
Lsp1109I	GCAGC	1 cut(s)	615
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	2 cut(s)	523, 608
MalI	GATC	2 cut(s)	555, 648
MboI	GATC	2 cut(s)	553, 646
MboII	GAAGA	5 cut(s)	190, 269, 548, 601, 649
MhlI	GDGCHC	2 cut(s)	103, 471
MluCI	AATT	2 cut(s)	80, 674
MluI	ACGCGT	1 cut(s)	238
MmeI	TCCRAC	2 cut(s)	126, 397
MnlI	CCTC	4 cut(s)	46, 206, 313, 441
MroXI	GAANNNNTTC	1 cut(s)	197
MslI	CAYNNNNRTG	2 cut(s)	382, 388
MspI	CCGG	3 cut(s)	97, 114, 215
MspR9I	CCNGG	3 cut(s)	98, 114, 539
MvaI	CCWGG	1 cut(s)	539
MvnI	CGCG	2 cut(s)	203, 240
MwoI	GCNNNNNNNGC	2 cut(s)	123, 677
NciI	CCSGG	2 cut(s)	98, 114
NdeII	GATC	2 cut(s)	553, 646
NlaIII	CATG	5 cut(s)	65, 74, 302, 371, 387
NlaIV	GGNNCC	6 cut(s)	68, 101, 102, 172, 194, 536
NmuCI	GTSAC	2 cut(s)	523, 608
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	295
PflFI	GACNNNGTC	1 cut(s)	402
PflMI	CCANNNNNTGG	1 cut(s)	477
PfoI	TCCNGGA	1 cut(s)	537
PkrI	GCNGC	2 cut(s)	7, 630
Psp6I	CCWGG	1 cut(s)	537
PspFI	CCCAGC	2 cut(s)	139, 156
PspGI	CCWGG	1 cut(s)	537
PspN4I	GGNNCC	6 cut(s)	68, 101, 102, 172, 194, 536
PspOMI	GGGCCC	1 cut(s)	99
PspPI	GGNCC	4 cut(s)	67, 99, 100, 657
PstNI	CAGNNNCTG	2 cut(s)	527, 628
PsyI	GACNNNGTC	1 cut(s)	402
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
RseI	CAYNNNNRTG	2 cut(s)	382, 388
SatI	GCNGC	2 cut(s)	6, 629
Sau3AI	GATC	2 cut(s)	553, 646
Sau96I	GGNCC	4 cut(s)	67, 99, 100, 657
ScrFI	CCNGG	3 cut(s)	98, 114, 539
SduI	GDGCHC	2 cut(s)	103, 471
SfcI	CTRYAG	1 cut(s)	604
SinI	GGWCC	1 cut(s)	657
SmiMI	CAYNNNNRTG	2 cut(s)	382, 388
Sse9I	AATT	2 cut(s)	80, 674
SsiI	CCGC	5 cut(s)	117, 124, 174, 203, 458
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	3 cut(s)	96, 112, 537
TaaI	ACNGT	3 cut(s)	608, 643, 654
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	3 cut(s)	78, 90, 264
TaqII	GACCGA	1 cut(s)	674
TasI	AATT	2 cut(s)	80, 674
TfiI	GAWTC	1 cut(s)	295
TscAI	CASTG	3 cut(s)	395, 528, 613
TseFI	GTSAC	2 cut(s)	523, 608
TseI	GCWGC	2 cut(s)	5, 628
Tsp45I	GTSAC	2 cut(s)	523, 608
TspDTI	ATGAA	5 cut(s)	16, 175, 287, 372, 525
TspRI	CASTG	3 cut(s)	395, 528, 613
Tth111I	GACNNNGTC	1 cut(s)	402
Van91I	CCANNNNNTGG	1 cut(s)	477
VpaK11BI	GGWCC	1 cut(s)	657
XapI	RAATTY	2 cut(s)	80, 674
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.