Rh6CG060100

Peptidase of plants and bacteria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001463
Physical Location & Seq
Reverse (-)
5952462 .. 5952794
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG060100.1

Sequence Viewer

Length: 333 bp
ATGGCTCGTTTTCTCTTGTCTTTCATCCTTGCCTCTCTCCTAGCCCTAGCTACTCTGCATGGAACCCATGCAGTTGAGTTCGTCGTCTTTAACCGGGCTCTCAACACCTCTGGCGGAGTCCGCTTCAGAAACCAGCTAGGAAGGAACTACACCCAGCAAAGGATGAGAGCCGCCACAAATTTCATCTGGAACCTCTTTAAAGAAACCACAGCTGCGGAGAGAAAGAACGTGCCACGAGTAAGCTTGTTCGTGGATGACATGGATGGCATCGCGTATACTATCAACGATGAGATTCACGTCGGGGCTAAATACATACAGGTATATATAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSP

Protein Analysis

110

Amino Acids

12.51

Weight (kDa)

9.86

Isoelectric Point (pI)

6.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSP PF04450 24 - 107 1.6e-17 Peptidase of plants and bacteria
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 275
AccII CGCG 1 cut(s) 272
AciI CCGC 4 cut(s) 114, 121, 171, 215
AcsI RAATTY 1 cut(s) 178
AcuI CTGAAG 1 cut(s) 109
AfiI CCNNNNNNNGG 1 cut(s) 159
AjiI CACGTC 1 cut(s) 298
AluBI AGCT 4 cut(s) 50, 136, 212, 243
AluI AGCT 4 cut(s) 50, 136, 212, 243
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 178
AsuC2I CCSGG 1 cut(s) 95
BanII GRGCYC 1 cut(s) 100
BauI CACGAG 1 cut(s) 234
BbvI GCAGC 1 cut(s) 199
BccI CCATC 1 cut(s) 257
BcnI CCSGG 1 cut(s) 95
BfaI CTAG 3 cut(s) 41, 47, 137
BisI GCNGC 2 cut(s) 171, 213
BlsI GCNGC 2 cut(s) 172, 214
Bme1390I CCNGG 1 cut(s) 95
BmgBI CACGTC 1 cut(s) 298
BmiI GGNNCC 2 cut(s) 64, 191
BmrFI CCNGG 1 cut(s) 95
BmsI GCATC 1 cut(s) 276
BpuMI CCSGG 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 159
BseGI GGATG 4 cut(s) 24, 168, 259, 268
BseLI CCNNNNNNNGG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 199
BseYI CCCAGC 1 cut(s) 153
Bsh1236I CGCG 1 cut(s) 272
BsiSI CCGG 1 cut(s) 94
BslI CCNNNNNNNGG 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 100
BspACI CCGC 4 cut(s) 114, 121, 171, 215
BspFNI CGCG 1 cut(s) 272
BspLI GGNNCC 2 cut(s) 64, 191
BssNAI GTATAC 1 cut(s) 276
BssSI CACGAG 1 cut(s) 234
Bst1107I GTATAC 1 cut(s) 276
Bst2BI CACGAG 1 cut(s) 234
BstF5I GGATG 4 cut(s) 24, 168, 259, 268
BstFNI CGCG 1 cut(s) 272
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 93
BstUI CGCG 1 cut(s) 272
BstV1I GCAGC 1 cut(s) 199
BstZ17I GTATAC 1 cut(s) 276
BtgZI GCGATG 1 cut(s) 253
BtrI CACGTC 1 cut(s) 298
BtsCI GGATG 4 cut(s) 24, 168, 259, 268
CviAII CATG 3 cut(s) 59, 68, 259
CviJI RGCY 9 cut(s) 5, 44, 50, 98, 136, 170, 212, 243, 305
CviKI_1 RGCY 9 cut(s) 5, 44, 50, 98, 136, 170, 212, 243, 305
DraI TTTAAA 1 cut(s) 199
EciI GGCGGA 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 100
FaeI CATG 3 cut(s) 62, 71, 262
FaiI YATR 8 cut(s) 60, 69, 260, 276, 314, 322, 324, 326
FatI CATG 3 cut(s) 58, 67, 258
FblI GTMKAC 1 cut(s) 275
Fnu4HI GCNGC 2 cut(s) 171, 213
FokI GGATG 4 cut(s) 11, 175, 266, 275
FriOI GRGCYC 1 cut(s) 100
Fsp4HI GCNGC 2 cut(s) 171, 213
FspBI CTAG 3 cut(s) 41, 47, 137
GluI GCNGC 2 cut(s) 171, 213
GsaI CCCAGC 1 cut(s) 157
HapII CCGG 1 cut(s) 94
Hin1II CATG 3 cut(s) 62, 71, 262
HindIII AAGCTT 1 cut(s) 241
HinfI GANTC 2 cut(s) 117, 292
HpaII CCGG 1 cut(s) 94
Hpy166II GTNNAC 1 cut(s) 276
Hpy188I TCNGA 1 cut(s) 128
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 1 cut(s) 276
Hpy99I CGWCG 2 cut(s) 86, 302
HpyAV CCTTC 1 cut(s) 135
HpyCH4IV ACGT 2 cut(s) 228, 297
HpyCH4V TGCA 2 cut(s) 58, 71
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpySE526I ACGT 2 cut(s) 228, 297
Hsp92II CATG 3 cut(s) 62, 71, 262
LpnPI CCDG 6 cut(s) 96, 107, 146, 167, 172, 302
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 1 cut(s) 276
MaeI CTAG 3 cut(s) 41, 47, 137
MaeII ACGT 2 cut(s) 228, 297
MhlI GDGCHC 1 cut(s) 100
MluCI AATT 1 cut(s) 178
MlyI GAGTC 1 cut(s) 126
MnlI CCTC 3 cut(s) 43, 118, 203
MseI TTAA 2 cut(s) 90, 198
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 1 cut(s) 94
MspR9I CCNGG 1 cut(s) 95
MvnI CGCG 1 cut(s) 272
MwoI GCNNNNNNNGC 1 cut(s) 120
NciI CCSGG 1 cut(s) 95
NlaIII CATG 3 cut(s) 62, 71, 262
NlaIV GGNNCC 2 cut(s) 64, 191
PfeI GAWTC 1 cut(s) 292
PkrI GCNGC 2 cut(s) 172, 214
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 153
PspN4I GGNNCC 2 cut(s) 64, 191
PvuII CAGCTG 1 cut(s) 212
SaqAI TTAA 2 cut(s) 90, 198
SatI GCNGC 2 cut(s) 171, 213
SchI GAGTC 1 cut(s) 126
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 1 cut(s) 100
SetI ASST 9 cut(s) 52, 110, 138, 195, 214, 231, 245, 300, 321
SfaNI GCATC 1 cut(s) 276
Sse9I AATT 1 cut(s) 178
SsiI CCGC 4 cut(s) 114, 121, 171, 215
SspMI CTAG 3 cut(s) 41, 47, 137
StyD4I CCNGG 1 cut(s) 93
TaiI ACGT 2 cut(s) 231, 300
TasI AATT 1 cut(s) 178
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 2 cut(s) 90, 198
Tru9I TTAA 2 cut(s) 90, 198
TseI GCWGC 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 13, 172
XapI RAATTY 1 cut(s) 178
XmiI GTMKAC 1 cut(s) 275
XspI CTAG 3 cut(s) 41, 47, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.