Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001463

Physical Location & Seq

Genomic Coordinates Forward (+)

9720634 .. 9721586

Gene Structure 953 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22856

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCTCGTTTTCTCTTGTCTTTCATCCTTGCCTCTCTCCTAGCCCTAACTACTCTGCATGGAACCCATGCAATCGAGTTCGTCGTCTTTAACCGGGCTCTCAACACCTCTGGCGGAGTCCGCTTCAGAAACGAGCTAGGGAGGAACTACACCCAGCAAAGGATGAGCGCTGCCACAAATTTTATCTGGAACCTCTTTAAAGAAACTACAGCTGCGGAGAGAAAGAACGTGCCACGAGTAAGCTTGTTCGTGGATGACATGGATGGCATCGCGTATACCATCAACGATGAGATTCACGGTATAAAAGGTGACATCAAAACGGACTTCAATGGGGTGTTATTCCACGAGATGACACACGTGTGGCAGTGGAACGGTAAGGGTCAAGCTCCCGGCGGATTAATAGAAAGAATTGCAGATTTTGTGAGGTTGAAGGCCGACTATGTTCCTAATGGGTGGGTGAAACCGGGCGAGGGTCAGCTTTGGGATGAGGGGTATTCGGTTACTGCACGATTCCTAGACTACTGCAATGGCCTCAAGCAAGGGTTTGTGGCAGAACTTAACAAGAAGATGAGAGACGGTTACAGTGACAATTTCTTTAGCCAATTGCTTGGGAAAACAGTAGATCAGCTGTGGAAAGACTACAAAGCTAAATTCGGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSP

Protein Analysis

220

Amino Acids

25.02

Weight (kDa)

8.58

Isoelectric Point (pI)

14.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BSP	PF04450	24 - 214	1.6e-66	Peptidase of plants and bacteria

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001463)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05000 FvH4_2g05010
prunus_persica	Prupe.3G126200_v2.0.a1 Prupe.6G105600_v2.0.a1 Prupe.6G105700_v2.0.a1 Prupe.8G136400_v2.0.a1 Prupe.8G136500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0244521 RchiOBHm_Chr6g0254761 RchiOBHm_Chr6g0254791 RchiOBHm_Chr6g0254801 RchiOBHm_Chr6g0254841
rosa_laevigata	RLG00000014888 RLG00000014889 RLG00000014890 RLG00000014935
rosa_multiflora	Rmu_sc0000016.1_g000001 Rmu_sc0003679.1_g000012 Rmu_sc0007716.1_g000005 Rmu_sc0007716.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210520 Rroxscaffold_7G00210530 Rroxscaffold_7G00210540 Rroxscaffold_7G00215780
rosa_rugosa	Rorug05G0550900 Rorug05G0554700 Rorug05G0554800 Rorug05G0554800
rosa_samantha	Rh6AG024700 Rh6AG072000 Rh6AG072100 Rh6BG019700 Rh6BG060200 Rh6BG064100 Rh6BG064200 Rh6BG064300 Rh6CG060000 Rh6CG060100 Rh6CG063500 Rh6CG063600 Rh6CG064100 Rh6CG064200 Rh6DG057100 Rh6DG060600 Rh6DG060700 Rh6DG061200 Rh6DG061300 Rh7CG516500
rosa_wichuraiana	Rw6G002010 Rw6G006290 Rw6G006300 Rw6G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	275
AccII	CGCG	1 cut(s)	272
AciI	CCGC	4 cut(s)	114, 121, 215, 393
AcsI	RAATTY	2 cut(s)	178, 650
AcuI	CTGAAG	1 cut(s)	109
AcvI	CACGTG	1 cut(s)	358
AfeI	AGCGCT	1 cut(s)	169
AfiI	CCNNNNNNNGG	2 cut(s)	159, 470
AflIII	ACRYGT	2 cut(s)	355, 357
AgsI	TTSAA	2 cut(s)	328, 430
AleI	CACNNNNGTG	1 cut(s)	358
AluBI	AGCT	7 cut(s)	136, 212, 243, 386, 478, 628, 647
AluI	AGCT	7 cut(s)	136, 212, 243, 386, 478, 628, 647
Alw26I	GTCTC	1 cut(s)	567
Aor51HI	AGCGCT	1 cut(s)	169
AoxI	GGCC	2 cut(s)	432, 529
ApeKI	GCWGC	2 cut(s)	170, 212
ApoI	RAATTY	2 cut(s)	178, 650
AseI	ATTAAT	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	170
AsuC2I	CCSGG	3 cut(s)	95, 390, 465
AsuHPI	GGTGA	2 cut(s)	320, 469
BanII	GRGCYC	1 cut(s)	100
BauI	CACGAG	2 cut(s)	234, 344
BbrPI	CACGTG	1 cut(s)	358
BbvI	GCAGC	2 cut(s)	157, 199
BccI	CCATC	2 cut(s)	257, 287
BcnI	CCSGG	3 cut(s)	95, 390, 465
BcoDI	GTCTC	1 cut(s)	567
BfaI	CTAG	3 cut(s)	41, 137, 515
BfmI	CTRYAG	1 cut(s)	207
BfoI	RGCGCY	1 cut(s)	171
BisI	GCNGC	2 cut(s)	171, 213
BlsI	GCNGC	2 cut(s)	172, 214
Bme1390I	CCNGG	3 cut(s)	95, 390, 465
BmiI	GGNNCC	2 cut(s)	64, 191
BmrFI	CCNGG	3 cut(s)	95, 390, 465
BmsI	GCATC	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	518
BpuMI	CCSGG	3 cut(s)	95, 390, 465
BsaAI	YACGTR	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 470
Bse3DI	GCAATG	1 cut(s)	532
BseGI	GGATG	5 cut(s)	24, 168, 259, 268, 490
BseLI	CCNNNNNNNGG	2 cut(s)	159, 470
BseMI	GCAATG	1 cut(s)	532
BseXI	GCAGC	2 cut(s)	157, 199
BseYI	CCCAGC	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	489
Bsh1236I	CGCG	1 cut(s)	272
BshFI	GGCC	2 cut(s)	434, 531
BsiSI	CCGG	3 cut(s)	94, 390, 464
BslI	CCNNNNNNNGG	2 cut(s)	159, 470
BsmAI	GTCTC	1 cut(s)	567
BsmBI	CGTCTC	1 cut(s)	567
BsnI	GGCC	2 cut(s)	434, 531
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	1 cut(s)	622
BspACI	CCGC	4 cut(s)	114, 121, 215, 393
BspANI	GGCC	2 cut(s)	434, 531
BspFNI	CGCG	1 cut(s)	272
BspLI	GGNNCC	2 cut(s)	64, 191
BsrDI	GCAATG	1 cut(s)	532
BssMI	GATC	1 cut(s)	622
BssNAI	GTATAC	1 cut(s)	276
BssSI	CACGAG	2 cut(s)	234, 344
Bst1107I	GTATAC	1 cut(s)	276
Bst2BI	CACGAG	2 cut(s)	234, 344
Bst4CI	ACNGT	5 cut(s)	299, 374, 578, 584, 619
BstBAI	YACGTR	1 cut(s)	358
BstF5I	GGATG	5 cut(s)	24, 168, 259, 268, 490
BstFNI	CGCG	1 cut(s)	272
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	1 cut(s)	625
BstMAI	GTCTC	1 cut(s)	567
BstMBI	GATC	1 cut(s)	622
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstSCI	CCNGG	3 cut(s)	93, 388, 463
BstSFI	CTRYAG	1 cut(s)	207
BstUI	CGCG	1 cut(s)	272
BstV1I	GCAGC	2 cut(s)	157, 199
BstXI	CCANNNNNNTGG	1 cut(s)	608
BstZ17I	GTATAC	1 cut(s)	276
BsuRI	GGCC	2 cut(s)	434, 531
BtgZI	GCGATG	1 cut(s)	253
BtsCI	GGATG	5 cut(s)	24, 168, 259, 268, 490
BtsI	GCAGTG	1 cut(s)	371
BtsIMutI	CAGTG	2 cut(s)	371, 589
CfoI	GCGC	1 cut(s)	170
CviAII	CATG	3 cut(s)	59, 68, 259
DpnI	GATC	1 cut(s)	624
DpnII	GATC	1 cut(s)	622
DraI	TTTAAA	1 cut(s)	199
EciI	GGCGGA	2 cut(s)	129, 408
Eco24I	GRGCYC	1 cut(s)	100
Eco47III	AGCGCT	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	109
Eco72I	CACGTG	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	100
Esp3I	CGTCTC	1 cut(s)	567
FaeI	CATG	3 cut(s)	62, 71, 262
FaiI	YATR	6 cut(s)	60, 69, 260, 276, 302, 441
FatI	CATG	3 cut(s)	58, 67, 258
FblI	GTMKAC	1 cut(s)	275
Fnu4HI	GCNGC	2 cut(s)	171, 213
FokI	GGATG	5 cut(s)	11, 175, 266, 275, 497
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	2 cut(s)	171, 213
FspBI	CTAG	3 cut(s)	41, 137, 515
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	2 cut(s)	171, 213
GsaI	CCCAGC	1 cut(s)	157
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	2 cut(s)	434, 531
HapII	CCGG	3 cut(s)	94, 390, 464
HhaI	GCGC	1 cut(s)	170
Hin1II	CATG	3 cut(s)	62, 71, 262
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HindIII	AAGCTT	1 cut(s)	241
HinfI	GANTC	3 cut(s)	117, 292, 510
HpaII	CCGG	3 cut(s)	94, 390, 464
HphI	GGTGA	2 cut(s)	320, 469
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188I	TCNGA	1 cut(s)	128
Hpy188III	TCNNGA	2 cut(s)	187, 655
Hpy8I	GTNNAC	1 cut(s)	276
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	1 cut(s)	424
HpyCH4III	ACNGT	5 cut(s)	299, 374, 578, 584, 619
HpyCH4IV	ACGT	2 cut(s)	228, 357
HpyCH4V	TGCA	5 cut(s)	58, 71, 413, 506, 525
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpySE526I	ACGT	2 cut(s)	228, 357
Hsp92II	CATG	3 cut(s)	62, 71, 262
HspAI	GCGC	1 cut(s)	168
Kzo9I	GATC	1 cut(s)	622
LmnI	GCTCC	1 cut(s)	391
LpnPI	CCDG	6 cut(s)	96, 107, 167, 172, 403, 477
Lsp1109I	GCAGC	2 cut(s)	157, 199
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	3 cut(s)	41, 137, 515
MaeII	ACGT	2 cut(s)	228, 357
MaeIII	GTNAC	4 cut(s)	308, 499, 578, 584
MalI	GATC	1 cut(s)	624
MboI	GATC	1 cut(s)	622
MboII	GAAGA	1 cut(s)	577
MfeI	CAATTG	1 cut(s)	602
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	5 cut(s)	178, 408, 589, 602, 650
MlyI	GAGTC	1 cut(s)	126
MnlI	CCTC	8 cut(s)	43, 118, 135, 203, 417, 463, 481, 542
MseI	TTAA	4 cut(s)	90, 198, 398, 558
MslI	CAYNNNNRTG	1 cut(s)	358
MspA1I	CMGCKG	2 cut(s)	212, 628
MspI	CCGG	3 cut(s)	94, 390, 464
MspR9I	CCNGG	3 cut(s)	95, 390, 465
MunI	CAATTG	1 cut(s)	602
MvnI	CGCG	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	120
NciI	CCSGG	3 cut(s)	95, 390, 465
NdeII	GATC	1 cut(s)	622
NlaIII	CATG	3 cut(s)	62, 71, 262
NlaIV	GGNNCC	2 cut(s)	64, 191
NmuCI	GTSAC	2 cut(s)	308, 584
OliI	CACNNNNGTG	1 cut(s)	358
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PfeI	GAWTC	2 cut(s)	292, 510
PkrI	GCNGC	2 cut(s)	172, 214
PleI	GAGTC	1 cut(s)	125
PmaCI	CACGTG	1 cut(s)	358
PmlI	CACGTG	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	125
Ppu21I	YACGTR	1 cut(s)	358
PshBI	ATTAAT	1 cut(s)	398
PspCI	CACGTG	1 cut(s)	358
PspFI	CCCAGC	1 cut(s)	153
PspN4I	GGNNCC	2 cut(s)	64, 191
PvuII	CAGCTG	2 cut(s)	212, 628
RseI	CAYNNNNRTG	1 cut(s)	358
SaqAI	TTAA	4 cut(s)	90, 198, 398, 558
SatI	GCNGC	2 cut(s)	171, 213
Sau3AI	GATC	1 cut(s)	622
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	3 cut(s)	95, 390, 465
SduI	GDGCHC	1 cut(s)	100
SfaNI	GCATC	1 cut(s)	276
SfcI	CTRYAG	1 cut(s)	207
SmiMI	CAYNNNNRTG	1 cut(s)	358
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	5 cut(s)	178, 408, 589, 602, 650
SsiI	CCGC	4 cut(s)	114, 121, 215, 393
SspMI	CTAG	3 cut(s)	41, 137, 515
StyD4I	CCNGG	3 cut(s)	93, 388, 463
TaaI	ACNGT	5 cut(s)	299, 374, 578, 584, 619
TaiI	ACGT	2 cut(s)	231, 360
TaqI	TCGA	1 cut(s)	75
TasI	AATT	5 cut(s)	178, 408, 589, 602, 650
TfiI	GAWTC	2 cut(s)	292, 510
Tru1I	TTAA	4 cut(s)	90, 198, 398, 558
Tru9I	TTAA	4 cut(s)	90, 198, 398, 558
TscAI	CASTG	2 cut(s)	371, 589
TseFI	GTSAC	2 cut(s)	308, 584
TseI	GCWGC	2 cut(s)	170, 212
Tsp45I	GTSAC	2 cut(s)	308, 584
TspDTI	ATGAA	1 cut(s)	13
TspGWI	ACGGA	1 cut(s)	335
TspRI	CASTG	2 cut(s)	371, 589
VspI	ATTAAT	1 cut(s)	398
XapI	RAATTY	2 cut(s)	178, 650
XmiI	GTMKAC	1 cut(s)	275
XspI	CTAG	3 cut(s)	41, 137, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.