Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001463

Physical Location & Seq

Genomic Coordinates Reverse (-)

2984932 .. 2986075

Gene Structure 1144 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG019700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCCCGCTTTCTACTTTCATTGGTCTTTGCCTCTCTCTTAGCCCTGGCTACTGTCCACGAAACTCAAGCTATTGAGTACATCGTCGAGAACCGGGCTCTCAACACCGCTGGCGGAGTCCGTTTTAGAGACGAGCTGGGCGTGGACTACACCAAGCAAAGAATGAGAGACGCCACTAATTTCATCTGGAACCTCTTTAAAGAAACTACAGCTGCAGAGAGAAGGGACACGCCGCGCATAAGCTTGTTCGTCGAAGACATAGAAGGCATTGCGGTTTCCAGCAGTGACATTATTCATTTTTCAGCAAAGTACATCGAGGGTCTAACGGCAGCAAAACTAAAAAACGACTTCAATGGGATACTTTACCATGAGATCACACACTCATTGCAGAGGAATGGAAAAGGTCAAGCTCCTGTTGGATTGGTAGAAGGGATTGCAGACTTTGTGAGCTTCTTGAAGGCTGGTTTTATGTACGATGGCTATGCAAACCCTGGTGATGGTAACCGTTGGGACGAGGGTTATGGCGTAACCGCACGGTTCCTGGAGTATTGCAATGGCCTTAAAGACGGGTTTGTTGCAGAGCTCAACAAGAAGATGATAGATGGTTACAGCAACATTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSP

Protein Analysis

207

Amino Acids

23.13

Weight (kDa)

5.56

Isoelectric Point (pI)

27.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BSP	PF04450	24 - 205	1.5e-52	Peptidase of plants and bacteria

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001463)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05000 FvH4_2g05010
prunus_persica	Prupe.3G126200_v2.0.a1 Prupe.6G105600_v2.0.a1 Prupe.6G105700_v2.0.a1 Prupe.8G136400_v2.0.a1 Prupe.8G136500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0244521 RchiOBHm_Chr6g0254761 RchiOBHm_Chr6g0254791 RchiOBHm_Chr6g0254801 RchiOBHm_Chr6g0254841
rosa_laevigata	RLG00000014888 RLG00000014889 RLG00000014890 RLG00000014935
rosa_multiflora	Rmu_sc0000016.1_g000001 Rmu_sc0003679.1_g000012 Rmu_sc0007716.1_g000005 Rmu_sc0007716.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210520 Rroxscaffold_7G00210530 Rroxscaffold_7G00210540 Rroxscaffold_7G00215780
rosa_rugosa	Rorug05G0550900 Rorug05G0554700 Rorug05G0554800 Rorug05G0554800
rosa_samantha	Rh6AG024700 Rh6AG072000 Rh6AG072100 Rh6BG019700 Rh6BG060200 Rh6BG064100 Rh6BG064200 Rh6BG064300 Rh6CG060000 Rh6CG060100 Rh6CG063500 Rh6CG063600 Rh6CG064100 Rh6CG064200 Rh6DG057100 Rh6DG060600 Rh6DG060700 Rh6DG061200 Rh6DG061300 Rh7CG516500
rosa_wichuraiana	Rw6G002010 Rw6G006290 Rw6G006300 Rw6G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	235
AciI	CCGC	6 cut(s)	7, 108, 114, 233, 272, 531
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	3 cut(s)	80, 311, 473
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	2 cut(s)	352, 457
AjnI	CCWGG	3 cut(s)	45, 490, 540
AluBI	AGCT	7 cut(s)	71, 136, 212, 243, 410, 450, 583
AluI	AGCT	7 cut(s)	71, 136, 212, 243, 410, 450, 583
Alw21I	GWGCWC	1 cut(s)	585
Alw26I	GTCTC	2 cut(s)	123, 162
AoxI	GGCC	2 cut(s)	3, 556
ApeKI	GCWGC	2 cut(s)	212, 329
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	506
BanII	GRGCYC	2 cut(s)	100, 585
BbsI	GAAGAC	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	585
BbvI	GCAGC	2 cut(s)	199, 341
BccI	CCATC	3 cut(s)	470, 491, 596
BceAI	ACGGC	1 cut(s)	342
BcgI	CGANNNNNNTGC	2 cut(s)	464, 498
BciT130I	CCWGG	3 cut(s)	47, 492, 542
BciVI	GTATCC	1 cut(s)	351
BcnI	CCSGG	1 cut(s)	95
BcoDI	GTCTC	2 cut(s)	123, 162
BfmI	CTRYAG	2 cut(s)	207, 213
BfuI	GTATCC	1 cut(s)	351
BisI	GCNGC	3 cut(s)	213, 233, 330
BlsI	GCNGC	3 cut(s)	214, 234, 331
Bme1390I	CCNGG	4 cut(s)	47, 95, 492, 542
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	191, 539
BmrFI	CCNGG	4 cut(s)	47, 95, 492, 542
BpiI	GAAGAC	1 cut(s)	261
BpmI	CTGGAG	1 cut(s)	563
BpuEI	CTTGAG	1 cut(s)	51
BpuMI	CCSGG	1 cut(s)	95
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	45, 490
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse3DI	GCAATG	3 cut(s)	267, 383, 559
BseBI	CCWGG	3 cut(s)	47, 492, 542
BseDI	CCNNGG	2 cut(s)	45, 490
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMI	GCAATG	3 cut(s)	267, 383, 559
BseXI	GCAGC	2 cut(s)	199, 341
BseYI	CCCAGC	1 cut(s)	136
Bsh1236I	CGCG	1 cut(s)	235
BshFI	GGCC	2 cut(s)	5, 558
BsiHKAI	GWGCWC	1 cut(s)	585
BsiSI	CCGG	1 cut(s)	94
BslFI	GGGAC	2 cut(s)	239, 524
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	2 cut(s)	123, 162
BsmBI	CGTCTC	2 cut(s)	123, 162
BsmFI	GGGAC	2 cut(s)	239, 524
BsnI	GGCC	2 cut(s)	5, 558
Bsp1286I	GDGCHC	2 cut(s)	100, 585
Bsp143I	GATC	1 cut(s)	372
BspACI	CCGC	6 cut(s)	7, 108, 114, 233, 272, 531
BspANI	GGCC	2 cut(s)	5, 558
BspFNI	CGCG	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	191, 539
BspMAI	CTGCAG	1 cut(s)	217
BsrDI	GCAATG	3 cut(s)	267, 383, 559
BssECI	CCNNGG	2 cut(s)	45, 490
BssMI	GATC	1 cut(s)	372
BssNI	GRCGYC	1 cut(s)	171
Bst2UI	CCWGG	3 cut(s)	47, 492, 542
Bst4CI	ACNGT	3 cut(s)	55, 506, 537
BstACI	GRCGYC	1 cut(s)	171
BstC8I	GCNNGC	2 cut(s)	7, 112
BstDEI	CTNAG	1 cut(s)	40
BstEII	GGTNACC	1 cut(s)	500
BstFNI	CGCG	1 cut(s)	235
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	1 cut(s)	375
BstMAI	GTCTC	2 cut(s)	123, 162
BstMBI	GATC	1 cut(s)	372
BstNI	CCWGG	3 cut(s)	47, 492, 542
BstPI	GGTNACC	1 cut(s)	500
BstSCI	CCNGG	4 cut(s)	45, 93, 490, 540
BstSFI	CTRYAG	2 cut(s)	207, 213
BstUI	CGCG	1 cut(s)	235
BstV1I	GCAGC	2 cut(s)	199, 341
BstV2I	GAAGAC	1 cut(s)	261
BsuI	GTATCC	1 cut(s)	351
BsuRI	GGCC	2 cut(s)	5, 558
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	289
Cac8I	GCNNGC	2 cut(s)	7, 112
CfoI	GCGC	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	3 cut(s)	79, 310, 472
CviAII	CATG	1 cut(s)	368
CviQI	GTAC	3 cut(s)	79, 310, 472
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	1 cut(s)	374
DpnII	GATC	1 cut(s)	372
DraI	TTTAAA	1 cut(s)	199
EciI	GGCGGA	1 cut(s)	129
Ecl136II	GAGCTC	1 cut(s)	583
Eco24I	GRGCYC	2 cut(s)	100, 585
Eco53kI	GAGCTC	1 cut(s)	583
Eco91I	GGTNACC	1 cut(s)	500
EcoICRI	GAGCTC	1 cut(s)	583
EcoO65I	GGTNACC	1 cut(s)	500
EcoRII	CCWGG	3 cut(s)	45, 490, 540
EcoT38I	GRGCYC	2 cut(s)	100, 585
Esp3I	CGTCTC	2 cut(s)	123, 162
FaeI	CATG	1 cut(s)	371
FaiI	YATR	6 cut(s)	239, 260, 369, 470, 483, 522
FaqI	GGGAC	2 cut(s)	239, 524
FatI	CATG	1 cut(s)	367
FauI	CCCGC	1 cut(s)	14
Fnu4HI	GCNGC	3 cut(s)	213, 233, 330
FriOI	GRGCYC	2 cut(s)	100, 585
Fsp4HI	GCNGC	3 cut(s)	213, 233, 330
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	3 cut(s)	213, 233, 330
GsaI	CCCAGC	1 cut(s)	140
GsuI	CTGGAG	1 cut(s)	563
HaeIII	GGCC	2 cut(s)	5, 558
HapII	CCGG	1 cut(s)	94
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	1 cut(s)	237
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	1 cut(s)	371
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HindIII	AAGCTT	1 cut(s)	241
HinfI	GANTC	1 cut(s)	117
HpaII	CCGG	1 cut(s)	94
HphI	GGTGA	1 cut(s)	506
Hpy166II	GTNNAC	2 cut(s)	58, 145
Hpy188III	TCNNGA	3 cut(s)	88, 187, 454
Hpy8I	GTNNAC	2 cut(s)	58, 145
Hpy99I	CGWCG	2 cut(s)	89, 254
HpyAV	CCTTC	4 cut(s)	216, 257, 422, 451
HpyCH4III	ACNGT	3 cut(s)	55, 506, 537
HpyCH4V	TGCA	6 cut(s)	215, 388, 437, 485, 552, 578
HpyF3I	CTNAG	1 cut(s)	40
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	371
HspAI	GCGC	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	372
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	2 cut(s)	199, 341
MaeIII	GTNAC	4 cut(s)	284, 500, 526, 605
MalI	GATC	1 cut(s)	374
MboI	GATC	1 cut(s)	372
MboII	GAAGA	2 cut(s)	266, 604
MhlI	GDGCHC	2 cut(s)	100, 585
MluCI	AATT	1 cut(s)	178
MlyI	GAGTC	1 cut(s)	126
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	5 cut(s)	43, 203, 310, 384, 508
MseI	TTAA	2 cut(s)	198, 561
MspA1I	CMGCKG	2 cut(s)	110, 212
MspI	CCGG	1 cut(s)	94
MspR9I	CCNGG	4 cut(s)	47, 95, 492, 542
MvaI	CCWGG	3 cut(s)	47, 492, 542
MvnI	CGCG	1 cut(s)	235
NciI	CCSGG	1 cut(s)	95
NdeII	GATC	1 cut(s)	372
NlaIII	CATG	1 cut(s)	371
NlaIV	GGNNCC	2 cut(s)	191, 539
NmuCI	GTSAC	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PfoI	TCCNGGA	1 cut(s)	540
PkrI	GCNGC	3 cut(s)	214, 234, 331
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
Psp124BI	GAGCTC	1 cut(s)	585
Psp6I	CCWGG	3 cut(s)	45, 490, 540
PspEI	GGTNACC	1 cut(s)	500
PspFI	CCCAGC	1 cut(s)	136
PspGI	CCWGG	3 cut(s)	45, 490, 540
PspN4I	GGNNCC	2 cut(s)	191, 539
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	217
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	3 cut(s)	80, 311, 473
RsaNI	GTAC	3 cut(s)	79, 310, 472
SacI	GAGCTC	1 cut(s)	585
SaqAI	TTAA	2 cut(s)	198, 561
SatI	GCNGC	3 cut(s)	213, 233, 330
Sau3AI	GATC	1 cut(s)	372
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	4 cut(s)	47, 95, 492, 542
SduI	GDGCHC	2 cut(s)	100, 585
SetI	ASST	9 cut(s)	73, 138, 195, 214, 245, 406, 412, 452, 585
SfcI	CTRYAG	2 cut(s)	207, 213
SmlI	CTYRAG	1 cut(s)	66
SmoI	CTYRAG	1 cut(s)	66
Sse9I	AATT	1 cut(s)	178
SsiI	CCGC	6 cut(s)	7, 108, 114, 233, 272, 531
SstI	GAGCTC	1 cut(s)	585
StyD4I	CCNGG	4 cut(s)	45, 93, 490, 540
TaaI	ACNGT	3 cut(s)	55, 506, 537
TaqI	TCGA	3 cut(s)	87, 252, 315
TasI	AATT	1 cut(s)	178
TatI	WGTACW	2 cut(s)	78, 309
TauI	GCSGC	1 cut(s)	235
Tru1I	TTAA	2 cut(s)	198, 561
Tru9I	TTAA	2 cut(s)	198, 561
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	2 cut(s)	212, 329
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	4 cut(s)	9, 172, 284, 608
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.