Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001463

Physical Location & Seq

Genomic Coordinates Reverse (-)

15658187 .. 15659842

Gene Structure 1656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G136500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCTGCTGCTCGTTTTCTCTTTTCTTTCATGCTCGCCTCTCTCCTTGCCCTAGCATCCTTGCATGGGGCTCATGCTGTCCACTACGCCGTCGTTAACCGGGCTCCAAACACCCCCGGCGGTATGCGCTTCAAAAATAAGCTGGGTGTGAACTACACCCAGCAAAAAATGGGAAACGCCACAAATTTCATTTGGAACCTCTTCAATGAAACTACACCGGCAGATAGAAAGAACGTGAAAAACGTAAGCTTGTTTGTGGATAACATCCCTGGCACTGCGCATGTCATCAACAATGAGATTCATGTTGGGGCTAAATACATTGAGAGCATACCGGGTGACATAAAAACAGAGTTCAGTGGGGTACTTTACCATGAGATGACACATATATGGCAGAGTCATGCAAATCATCAAGCTCCAAATGGATTGATAGAAGGGATTGCAGACTTTGTGAGGTTGAAGGCAAATTATGTGCCCCATAGTTGGGCAAAACCGGGTGAAGGTCTAAGTTGGAAGCAAGGTTCTTCAGTGACTGCAAGGTTCCTGGACTATTGCAATGGTCTTCATCAACAACAAGGGTTTGTGGCTCAACTGAACAAGAAGATGAGAGATGGCTATAGTGACAGCTTCTTTCACGAGCTGCTTGGGAAGACAGTTGATCAACTGTGGACCGACTACAAAGCTAAATTTGCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSP

Protein Analysis

232

Amino Acids

25.84

Weight (kDa)

9.23

Isoelectric Point (pI)

26.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001463)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05000 FvH4_2g05010
prunus_persica	Prupe.3G126200_v2.0.a1 Prupe.6G105600_v2.0.a1 Prupe.6G105700_v2.0.a1 Prupe.8G136400_v2.0.a1 Prupe.8G136500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0244521 RchiOBHm_Chr6g0254761 RchiOBHm_Chr6g0254791 RchiOBHm_Chr6g0254801 RchiOBHm_Chr6g0254841
rosa_laevigata	RLG00000014888 RLG00000014889 RLG00000014890 RLG00000014935
rosa_multiflora	Rmu_sc0000016.1_g000001 Rmu_sc0003679.1_g000012 Rmu_sc0007716.1_g000005 Rmu_sc0007716.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210520 Rroxscaffold_7G00210530 Rroxscaffold_7G00210540 Rroxscaffold_7G00215780
rosa_rugosa	Rorug05G0550900 Rorug05G0554700 Rorug05G0554800 Rorug05G0554800
rosa_samantha	Rh6AG024700 Rh6AG072000 Rh6AG072100 Rh6BG019700 Rh6BG060200 Rh6BG064100 Rh6BG064200 Rh6BG064300 Rh6CG060000 Rh6CG060100 Rh6CG063500 Rh6CG063600 Rh6CG064100 Rh6CG064200 Rh6DG057100 Rh6DG060600 Rh6DG060700 Rh6DG061200 Rh6DG061300 Rh7CG516500
rosa_wichuraiana	Rw6G002010 Rw6G006290 Rw6G006300 Rw6G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	279
AciI	CCGC	1 cut(s)	120
AcsI	RAATTY	2 cut(s)	184, 683
AcuI	CTGAAG	1 cut(s)	507
AfaI	GTAC	1 cut(s)	363
AfiI	CCNNNNNNNGG	4 cut(s)	66, 480, 481, 497
AgsI	TTSAA	3 cut(s)	133, 205, 457
AjnI	CCWGG	2 cut(s)	268, 540
AloI	GAACNNNNNNTCC	2 cut(s)	502, 534
AluBI	AGCT	6 cut(s)	142, 249, 413, 624, 637, 680
AluI	AGCT	6 cut(s)	142, 249, 413, 624, 637, 680
AlwNI	CAGNNNCTG	1 cut(s)	530
ApeKI	GCWGC	3 cut(s)	5, 8, 637
ApoI	RAATTY	2 cut(s)	184, 683
Asp700I	GAANNNNTTC	1 cut(s)	200
AspLEI	GCGC	2 cut(s)	129, 280
AspS9I	GGNCC	1 cut(s)	666
AsuC2I	CCSGG	4 cut(s)	101, 117, 333, 492
AsuHPI	GGTGA	2 cut(s)	347, 506
AvaII	GGWCC	1 cut(s)	666
BaeGI	GKGCMC	1 cut(s)	474
BanII	GRGCYC	2 cut(s)	73, 106
BauI	CACGAG	1 cut(s)	632
BbsI	GAAGAC	2 cut(s)	551, 653
BbvI	GCAGC	1 cut(s)	624
BccI	CCATC	1 cut(s)	602
BceAI	ACGGC	1 cut(s)	74
BciT130I	CCWGG	2 cut(s)	270, 542
BclI	TGATCA	1 cut(s)	655
BcnI	CCSGG	4 cut(s)	101, 117, 333, 492
BfaI	CTAG	1 cut(s)	53
BfmI	CTRYAG	1 cut(s)	613
BisI	GCNGC	3 cut(s)	6, 9, 638
BlsI	GCNGC	3 cut(s)	7, 10, 639
Bme1390I	CCNGG	6 cut(s)	101, 117, 270, 333, 492, 542
Bme18I	GGWCC	1 cut(s)	666
BmgT120I	GGNCC	1 cut(s)	666
BmiI	GGNNCC	3 cut(s)	105, 197, 539
BmrFI	CCNGG	6 cut(s)	101, 117, 270, 333, 492, 542
BmsI	GCATC	1 cut(s)	65
BpiI	GAAGAC	2 cut(s)	551, 653
BpuMI	CCSGG	4 cut(s)	101, 117, 333, 492
BsaJI	CCNNGG	2 cut(s)	115, 268
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 480, 481, 497
Bse118I	RCCGGY	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	559
BseBI	CCWGG	2 cut(s)	270, 542
BseDI	CCNNGG	2 cut(s)	115, 268
BseGI	GGATG	2 cut(s)	56, 264
BseLI	CCNNNNNNNGG	4 cut(s)	66, 480, 481, 497
BseMI	GCAATG	1 cut(s)	559
BseSI	GKGCMC	1 cut(s)	474
BseXI	GCAGC	1 cut(s)	624
BseYI	CCCAGC	2 cut(s)	142, 159
BsiSI	CCGG	5 cut(s)	100, 117, 218, 332, 491
BslI	CCNNNNNNNGG	4 cut(s)	66, 480, 481, 497
Bsp1286I	GDGCHC	3 cut(s)	73, 106, 474
Bsp143I	GATC	1 cut(s)	655
BspACI	CCGC	1 cut(s)	120
BspLI	GGNNCC	3 cut(s)	105, 197, 539
BsrDI	GCAATG	1 cut(s)	559
BsrFI	RCCGGY	1 cut(s)	217
BssAI	RCCGGY	1 cut(s)	217
BssECI	CCNNGG	2 cut(s)	115, 268
BssMI	GATC	1 cut(s)	655
BssSI	CACGAG	1 cut(s)	632
Bst2BI	CACGAG	1 cut(s)	632
Bst2UI	CCWGG	2 cut(s)	270, 542
Bst4CI	ACNGT	2 cut(s)	652, 663
Bst6I	CTCTTC	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	503
BstF5I	GGATG	2 cut(s)	56, 264
BstHHI	GCGC	2 cut(s)	129, 280
BstKTI	GATC	1 cut(s)	658
BstMBI	GATC	1 cut(s)	655
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 686
BstNI	CCWGG	2 cut(s)	270, 542
BstNSI	RCATGY	1 cut(s)	284
BstSCI	CCNGG	6 cut(s)	99, 115, 268, 331, 490, 540
BstSFI	CTRYAG	1 cut(s)	613
BstSLI	GKGCMC	1 cut(s)	474
BstV1I	GCAGC	1 cut(s)	624
BstV2I	GAAGAC	2 cut(s)	551, 653
BtsCI	GGATG	2 cut(s)	56, 264
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	3 cut(s)	273, 361, 531
Cac8I	GCNNGC	1 cut(s)	36
CaiI	CAGNNNCTG	1 cut(s)	530
CfoI	GCGC	2 cut(s)	129, 280
Cfr10I	RCCGGY	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	666
Csp6I	GTAC	1 cut(s)	362
CviAII	CATG	7 cut(s)	31, 65, 74, 281, 302, 371, 398
CviQI	GTAC	1 cut(s)	362
DdeI	CTNAG	1 cut(s)	503
DpnI	GATC	1 cut(s)	657
DpnII	GATC	1 cut(s)	655
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco24I	GRGCYC	2 cut(s)	73, 106
Eco47I	GGWCC	1 cut(s)	666
Eco57I	CTGAAG	1 cut(s)	507
EcoRII	CCWGG	2 cut(s)	268, 540
EcoT38I	GRGCYC	2 cut(s)	73, 106
FaeI	CATG	7 cut(s)	34, 68, 77, 284, 305, 374, 401
FatI	CATG	7 cut(s)	30, 64, 73, 280, 301, 370, 397
FbaI	TGATCA	1 cut(s)	655
Fnu4HI	GCNGC	3 cut(s)	6, 9, 638
FokI	GGATG	2 cut(s)	43, 251
FriOI	GRGCYC	2 cut(s)	73, 106
Fsp4HI	GCNGC	3 cut(s)	6, 9, 638
FspBI	CTAG	1 cut(s)	53
FspI	TGCGCA	1 cut(s)	279
GlaI	GCGC	2 cut(s)	128, 279
GluI	GCNGC	3 cut(s)	6, 9, 638
GsaI	CCCAGC	2 cut(s)	146, 163
HapII	CCGG	5 cut(s)	100, 117, 218, 332, 491
HhaI	GCGC	2 cut(s)	129, 280
Hin1II	CATG	7 cut(s)	34, 68, 77, 284, 305, 374, 401
Hin6I	GCGC	2 cut(s)	127, 278
HinP1I	GCGC	2 cut(s)	127, 278
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	247
HinfI	GANTC	2 cut(s)	298, 394
HpaI	GTTAAC	1 cut(s)	97
HpaII	CCGG	5 cut(s)	100, 117, 218, 332, 491
HphI	GGTGA	2 cut(s)	347, 506
Hpy166II	GTNNAC	4 cut(s)	82, 97, 151, 666
Hpy188III	TCNNGA	1 cut(s)	632
Hpy8I	GTNNAC	4 cut(s)	82, 97, 151, 666
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	3 cut(s)	425, 451, 491
HpyCH4III	ACNGT	2 cut(s)	652, 663
HpyCH4IV	ACGT	2 cut(s)	234, 243
HpyCH4V	TGCA	6 cut(s)	64, 401, 440, 533, 552, 689
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 686
HpyF3I	CTNAG	1 cut(s)	503
HpySE526I	ACGT	2 cut(s)	234, 243
Hsp92II	CATG	7 cut(s)	34, 68, 77, 284, 305, 374, 401
HspAI	GCGC	2 cut(s)	127, 278
Ksp22I	TGATCA	1 cut(s)	655
KspAI	GTTAAC	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	655
LmnI	GCTCC	2 cut(s)	109, 418
Lsp1109I	GCAGC	1 cut(s)	624
LweI	GCATC	1 cut(s)	65
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	2 cut(s)	234, 243
MaeIII	GTNAC	3 cut(s)	335, 526, 617
MalI	GATC	1 cut(s)	657
MboI	GATC	1 cut(s)	655
MboII	GAAGA	5 cut(s)	193, 513, 551, 610, 658
MhlI	GDGCHC	3 cut(s)	73, 106, 474
MluCI	AATT	3 cut(s)	184, 463, 683
MlyI	GAGTC	1 cut(s)	403
MmeI	TCCRAC	1 cut(s)	488
MnlI	CCTC	3 cut(s)	49, 209, 444
MroXI	GAANNNNTTC	1 cut(s)	200
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	1 cut(s)	385
MspI	CCGG	5 cut(s)	100, 117, 218, 332, 491
MspR9I	CCNGG	6 cut(s)	101, 117, 270, 333, 492, 542
MvaI	CCWGG	2 cut(s)	270, 542
MwoI	GCNNNNNNNGC	2 cut(s)	126, 686
NciI	CCSGG	4 cut(s)	101, 117, 333, 492
NdeII	GATC	1 cut(s)	655
NlaIII	CATG	7 cut(s)	34, 68, 77, 284, 305, 374, 401
NlaIV	GGNNCC	3 cut(s)	105, 197, 539
NmuCI	GTSAC	3 cut(s)	335, 526, 617
NsbI	TGCGCA	1 cut(s)	279
NspI	RCATGY	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PdmI	GAANNNNTTC	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	298
PfoI	TCCNGGA	1 cut(s)	540
PkrI	GCNGC	3 cut(s)	7, 10, 639
PleI	GAGTC	1 cut(s)	402
PpsI	GAGTC	1 cut(s)	402
Psp6I	CCWGG	2 cut(s)	268, 540
PspFI	CCCAGC	2 cut(s)	142, 159
PspGI	CCWGG	2 cut(s)	268, 540
PspN4I	GGNNCC	3 cut(s)	105, 197, 539
PspPI	GGNCC	1 cut(s)	666
PstNI	CAGNNNCTG	1 cut(s)	530
RsaI	GTAC	1 cut(s)	363
RsaNI	GTAC	1 cut(s)	362
RseI	CAYNNNNRTG	1 cut(s)	385
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	3 cut(s)	6, 9, 638
Sau3AI	GATC	1 cut(s)	655
Sau96I	GGNCC	1 cut(s)	666
SchI	GAGTC	1 cut(s)	403
ScrFI	CCNGG	6 cut(s)	101, 117, 270, 333, 492, 542
SduI	GDGCHC	3 cut(s)	73, 106, 474
SfaNI	GCATC	1 cut(s)	65
SfcI	CTRYAG	1 cut(s)	613
SinI	GGWCC	1 cut(s)	666
SmiMI	CAYNNNNRTG	1 cut(s)	385
Sse9I	AATT	3 cut(s)	184, 463, 683
SsiI	CCGC	1 cut(s)	120
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	6 cut(s)	99, 115, 268, 331, 490, 540
TaaI	ACNGT	2 cut(s)	652, 663
TaiI	ACGT	2 cut(s)	237, 246
TaqII	GACCGA	1 cut(s)	683
TasI	AATT	3 cut(s)	184, 463, 683
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	3 cut(s)	280, 361, 531
TseFI	GTSAC	3 cut(s)	335, 526, 617
TseI	GCWGC	3 cut(s)	5, 8, 637
Tsp45I	GTSAC	3 cut(s)	335, 526, 617
TspDTI	ATGAA	5 cut(s)	19, 178, 222, 290, 551
TspRI	CASTG	3 cut(s)	280, 361, 531
VpaK11BI	GGWCC	1 cut(s)	666
XapI	RAATTY	2 cut(s)	184, 683
XceI	RCATGY	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	200
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.