Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001463

Physical Location & Seq

Genomic Coordinates Reverse (-)

61018887 .. 61019759

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00210520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCTCGTTTTCTCTTGTCTTTCATCCTTGCCTCTCTCCTAGCCCTAACTACTCTGCATGGAATCCATGCAGTCGAGTTCGTCGTCTTTAACCGGGCTCTCAACACCTCTGGCGGAGTCCGCTTCAGAAACCAGCTAGGGAGGAACTACACCCAGCAAAGGATGAGCGCTGCCACAAATTTTATCTGGAACCTCTTTAAAGAAACTACAGCTGCGGAGAGAAAGAACGTGCCACGAGTAAGCTTGTTCGTGGAAGACATGGATGGCATCGCGTATACCATCAACGATGAGATTCACGTCGGGGCTAAATACATACAGTGGAACGGTAAGGGTCAAGCTCCCGGCGGATTAATAGAAGGAATTGCAGATTTTGTGAGGTTGAAGGCCGACTATGTTCCTAATGGGTGGGTGAAACCGGGCGAGGGTCAGCGTTGGGATGAGGGGTATTCGGTTACTGCACGATTCCTAGACTACTGCAATGGCCTCAAGCAAGGGTTTGTGGCAGAACTTAACAAGAAGATGAGAGACGGTTATAGTGACAATTTCTTTAGCCAATTGCTTGGGAAAACAGTTGATCAGCTGTGGAAAGACTACAAAGCTAAATTCGGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSP

Protein Analysis

204

Amino Acids

23.07

Weight (kDa)

9.28

Isoelectric Point (pI)

18.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BSP	PF04450	24 - 106	1.8e-16	Peptidase of plants and bacteria
BSP	PF04450	106 - 198	1.4e-41	Peptidase of plants and bacteria

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001463)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05000 FvH4_2g05010
prunus_persica	Prupe.3G126200_v2.0.a1 Prupe.6G105600_v2.0.a1 Prupe.6G105700_v2.0.a1 Prupe.8G136400_v2.0.a1 Prupe.8G136500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0244521 RchiOBHm_Chr6g0254761 RchiOBHm_Chr6g0254791 RchiOBHm_Chr6g0254801 RchiOBHm_Chr6g0254841
rosa_laevigata	RLG00000014888 RLG00000014889 RLG00000014890 RLG00000014935
rosa_multiflora	Rmu_sc0000016.1_g000001 Rmu_sc0003679.1_g000012 Rmu_sc0007716.1_g000005 Rmu_sc0007716.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210520 Rroxscaffold_7G00210530 Rroxscaffold_7G00210540 Rroxscaffold_7G00215780
rosa_rugosa	Rorug05G0550900 Rorug05G0554700 Rorug05G0554800 Rorug05G0554800
rosa_samantha	Rh6AG024700 Rh6AG072000 Rh6AG072100 Rh6BG019700 Rh6BG060200 Rh6BG064100 Rh6BG064200 Rh6BG064300 Rh6CG060000 Rh6CG060100 Rh6CG063500 Rh6CG063600 Rh6CG064100 Rh6CG064200 Rh6DG057100 Rh6DG060600 Rh6DG060700 Rh6DG061200 Rh6DG061300 Rh7CG516500
rosa_wichuraiana	Rw6G002010 Rw6G006290 Rw6G006300 Rw6G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	275
AccII	CGCG	1 cut(s)	272
AciI	CCGC	4 cut(s)	114, 121, 215, 345
AcsI	RAATTY	2 cut(s)	178, 602
AcuI	CTGAAG	1 cut(s)	109
AfeI	AGCGCT	1 cut(s)	169
AfiI	CCNNNNNNNGG	2 cut(s)	159, 422
AgsI	TTSAA	1 cut(s)	382
AjiI	CACGTC	1 cut(s)	298
AluBI	AGCT	6 cut(s)	136, 212, 243, 338, 580, 599
AluI	AGCT	6 cut(s)	136, 212, 243, 338, 580, 599
Alw26I	GTCTC	1 cut(s)	519
Aor51HI	AGCGCT	1 cut(s)	169
AoxI	GGCC	2 cut(s)	384, 481
ApeKI	GCWGC	2 cut(s)	170, 212
ApoI	RAATTY	2 cut(s)	178, 602
AseI	ATTAAT	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	170
AsuC2I	CCSGG	3 cut(s)	95, 342, 417
AsuHPI	GGTGA	1 cut(s)	421
BanII	GRGCYC	1 cut(s)	100
BauI	CACGAG	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	261
BbvI	GCAGC	2 cut(s)	157, 199
BccI	CCATC	2 cut(s)	257, 287
BclI	TGATCA	1 cut(s)	574
BcnI	CCSGG	3 cut(s)	95, 342, 417
BcoDI	GTCTC	1 cut(s)	519
BfaI	CTAG	3 cut(s)	41, 137, 467
BfmI	CTRYAG	1 cut(s)	207
BfoI	RGCGCY	1 cut(s)	171
BisI	GCNGC	2 cut(s)	171, 213
BlsI	GCNGC	2 cut(s)	172, 214
Bme1390I	CCNGG	3 cut(s)	95, 342, 417
BmgBI	CACGTC	1 cut(s)	298
BmiI	GGNNCC	1 cut(s)	191
BmrFI	CCNGG	3 cut(s)	95, 342, 417
BmsI	GCATC	1 cut(s)	276
BpiI	GAAGAC	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	470
BpuMI	CCSGG	3 cut(s)	95, 342, 417
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 422
Bse3DI	GCAATG	1 cut(s)	484
BseGI	GGATG	4 cut(s)	24, 168, 268, 442
BseLI	CCNNNNNNNGG	2 cut(s)	159, 422
BseMI	GCAATG	1 cut(s)	484
BseXI	GCAGC	2 cut(s)	157, 199
BseYI	CCCAGC	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	441
Bsh1236I	CGCG	1 cut(s)	272
BshFI	GGCC	2 cut(s)	386, 483
BsiSI	CCGG	3 cut(s)	94, 342, 416
BslI	CCNNNNNNNGG	2 cut(s)	159, 422
BsmAI	GTCTC	1 cut(s)	519
BsmBI	CGTCTC	1 cut(s)	519
BsnI	GGCC	2 cut(s)	386, 483
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	1 cut(s)	574
BspACI	CCGC	4 cut(s)	114, 121, 215, 345
BspANI	GGCC	2 cut(s)	386, 483
BspFNI	CGCG	1 cut(s)	272
BspLI	GGNNCC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	484
BssMI	GATC	1 cut(s)	574
BssNAI	GTATAC	1 cut(s)	276
BssSI	CACGAG	1 cut(s)	234
Bst1107I	GTATAC	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	234
Bst4CI	ACNGT	4 cut(s)	318, 326, 530, 571
BstF5I	GGATG	4 cut(s)	24, 168, 268, 442
BstFNI	CGCG	1 cut(s)	272
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	1 cut(s)	577
BstMAI	GTCTC	1 cut(s)	519
BstMBI	GATC	1 cut(s)	574
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstSCI	CCNGG	3 cut(s)	93, 340, 415
BstSFI	CTRYAG	1 cut(s)	207
BstUI	CGCG	1 cut(s)	272
BstV1I	GCAGC	2 cut(s)	157, 199
BstV2I	GAAGAC	1 cut(s)	261
BstXI	CCANNNNNNTGG	1 cut(s)	560
BstZ17I	GTATAC	1 cut(s)	276
BsuRI	GGCC	2 cut(s)	386, 483
BtgZI	GCGATG	1 cut(s)	253
BtrI	CACGTC	1 cut(s)	298
BtsCI	GGATG	4 cut(s)	24, 168, 268, 442
BtsIMutI	CAGTG	1 cut(s)	323
CfoI	GCGC	1 cut(s)	170
CviAII	CATG	3 cut(s)	59, 68, 259
DpnI	GATC	1 cut(s)	576
DpnII	GATC	1 cut(s)	574
DraI	TTTAAA	1 cut(s)	199
EciI	GGCGGA	2 cut(s)	129, 360
Eco24I	GRGCYC	1 cut(s)	100
Eco47III	AGCGCT	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	100
Esp3I	CGTCTC	1 cut(s)	519
FaeI	CATG	3 cut(s)	62, 71, 262
FaiI	YATR	7 cut(s)	60, 69, 260, 276, 314, 393, 534
FatI	CATG	3 cut(s)	58, 67, 258
FbaI	TGATCA	1 cut(s)	574
FblI	GTMKAC	1 cut(s)	275
Fnu4HI	GCNGC	2 cut(s)	171, 213
FokI	GGATG	4 cut(s)	11, 175, 275, 449
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	2 cut(s)	171, 213
FspBI	CTAG	3 cut(s)	41, 137, 467
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	2 cut(s)	171, 213
GsaI	CCCAGC	1 cut(s)	157
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	2 cut(s)	386, 483
HapII	CCGG	3 cut(s)	94, 342, 416
HhaI	GCGC	1 cut(s)	170
Hin1II	CATG	3 cut(s)	62, 71, 262
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HindIII	AAGCTT	1 cut(s)	241
HinfI	GANTC	4 cut(s)	63, 117, 292, 462
HpaII	CCGG	3 cut(s)	94, 342, 416
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188I	TCNGA	1 cut(s)	128
Hpy188III	TCNNGA	2 cut(s)	187, 607
Hpy8I	GTNNAC	1 cut(s)	276
Hpy99I	CGWCG	2 cut(s)	86, 302
HpyAV	CCTTC	2 cut(s)	350, 376
HpyCH4III	ACNGT	4 cut(s)	318, 326, 530, 571
HpyCH4IV	ACGT	2 cut(s)	228, 297
HpyCH4V	TGCA	5 cut(s)	58, 71, 365, 458, 477
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpySE526I	ACGT	2 cut(s)	228, 297
Hsp92II	CATG	3 cut(s)	62, 71, 262
HspAI	GCGC	1 cut(s)	168
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	1 cut(s)	574
LmnI	GCTCC	1 cut(s)	343
LpnPI	CCDG	7 cut(s)	96, 107, 146, 167, 172, 355, 429
Lsp1109I	GCAGC	2 cut(s)	157, 199
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	3 cut(s)	41, 137, 467
MaeII	ACGT	2 cut(s)	228, 297
MaeIII	GTNAC	2 cut(s)	451, 536
MalI	GATC	1 cut(s)	576
MboI	GATC	1 cut(s)	574
MboII	GAAGA	2 cut(s)	266, 529
MfeI	CAATTG	1 cut(s)	554
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	5 cut(s)	178, 360, 541, 554, 602
MlyI	GAGTC	1 cut(s)	126
MnlI	CCTC	8 cut(s)	43, 118, 135, 203, 369, 415, 433, 494
MseI	TTAA	4 cut(s)	90, 198, 350, 510
MspA1I	CMGCKG	2 cut(s)	212, 580
MspI	CCGG	3 cut(s)	94, 342, 416
MspR9I	CCNGG	3 cut(s)	95, 342, 417
MunI	CAATTG	1 cut(s)	554
MvnI	CGCG	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	120
NciI	CCSGG	3 cut(s)	95, 342, 417
NdeII	GATC	1 cut(s)	574
NlaIII	CATG	3 cut(s)	62, 71, 262
NlaIV	GGNNCC	1 cut(s)	191
NmuCI	GTSAC	1 cut(s)	536
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PfeI	GAWTC	3 cut(s)	63, 292, 462
PkrI	GCNGC	2 cut(s)	172, 214
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PshBI	ATTAAT	1 cut(s)	350
PspFI	CCCAGC	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	191
PvuII	CAGCTG	2 cut(s)	212, 580
SaqAI	TTAA	4 cut(s)	90, 198, 350, 510
SatI	GCNGC	2 cut(s)	171, 213
Sau3AI	GATC	1 cut(s)	574
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	3 cut(s)	95, 342, 417
SduI	GDGCHC	1 cut(s)	100
SfaNI	GCATC	1 cut(s)	276
SfcI	CTRYAG	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	5 cut(s)	178, 360, 541, 554, 602
SsiI	CCGC	4 cut(s)	114, 121, 215, 345
SspMI	CTAG	3 cut(s)	41, 137, 467
StyD4I	CCNGG	3 cut(s)	93, 340, 415
TaaI	ACNGT	4 cut(s)	318, 326, 530, 571
TaiI	ACGT	2 cut(s)	231, 300
TaqI	TCGA	1 cut(s)	75
TasI	AATT	5 cut(s)	178, 360, 541, 554, 602
TfiI	GAWTC	3 cut(s)	63, 292, 462
Tru1I	TTAA	4 cut(s)	90, 198, 350, 510
Tru9I	TTAA	4 cut(s)	90, 198, 350, 510
TscAI	CASTG	1 cut(s)	323
TseFI	GTSAC	1 cut(s)	536
TseI	GCWGC	2 cut(s)	170, 212
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	1 cut(s)	13
TspRI	CASTG	1 cut(s)	323
VspI	ATTAAT	1 cut(s)	350
XapI	RAATTY	2 cut(s)	178, 602
XmiI	GTMKAC	1 cut(s)	275
XspI	CTAG	3 cut(s)	41, 137, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.