Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003679.1

Orthogroup ID

OG0001463

Physical Location & Seq

Genomic Coordinates Forward (+)

47296 .. 48556

Gene Structure 1261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003679.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atggcccgctttctcctttcattggtctttgcctctctcttagccctggctactgtccatgaaactcaagctattgagtacatcgtcgagaaccgggctctcaacaccgctggcggagtccgttttagagacgagctgggtgtggactacaccaagcaaagaatgagagacgccactgatttcatctggaacctctttaaggaaactacagctgcagagagaagggacacgccgcgcataagcttgttcgtcgaagacatagaaggcattgcggtttccagcagtgacattattcatttttcagcaaagtacatcgagggtctaacggcagcaaaactaaaaaacgacttcaatgggatacttttccatgagatcacacactcattgcagaggaatggaaaaggtcaagctcctgttggattggtagaagggattgcagactttgtgagcttcttgaaggctggttttatatacgatggctatgcaaaccccggtgatggtaaccgttgggacgagggttatggcgtaaccgcacggttcctggagtattgcaatgaccttaaagacgggtttgttgcagaactcaacaagaagatgatagatagttacagcaacgatttctttaaccagttgctcgagaagacagtcgatcagctgtggactgactacaaagccaaatatgcaaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSP

Protein Analysis

229

Amino Acids

25.87

Weight (kDa)

5.08

Isoelectric Point (pI)

24.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001463)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05000 FvH4_2g05010
prunus_persica	Prupe.3G126200_v2.0.a1 Prupe.6G105600_v2.0.a1 Prupe.6G105700_v2.0.a1 Prupe.8G136400_v2.0.a1 Prupe.8G136500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0244521 RchiOBHm_Chr6g0254761 RchiOBHm_Chr6g0254791 RchiOBHm_Chr6g0254801 RchiOBHm_Chr6g0254841
rosa_laevigata	RLG00000014888 RLG00000014889 RLG00000014890 RLG00000014935
rosa_multiflora	Rmu_sc0000016.1_g000001 Rmu_sc0003679.1_g000012 Rmu_sc0007716.1_g000005 Rmu_sc0007716.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210520 Rroxscaffold_7G00210530 Rroxscaffold_7G00210540 Rroxscaffold_7G00215780
rosa_rugosa	Rorug05G0550900 Rorug05G0554700 Rorug05G0554800 Rorug05G0554800
rosa_samantha	Rh6AG024700 Rh6AG072000 Rh6AG072100 Rh6BG019700 Rh6BG060200 Rh6BG064100 Rh6BG064200 Rh6BG064300 Rh6CG060000 Rh6CG060100 Rh6CG063500 Rh6CG063600 Rh6CG064100 Rh6CG064200 Rh6DG057100 Rh6DG060600 Rh6DG060700 Rh6DG061200 Rh6DG061300 Rh7CG516500
rosa_wichuraiana	Rw6G002010 Rw6G006290 Rw6G006300 Rw6G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	235
AciI	CCGC	6 cut(s)	7, 108, 114, 233, 272, 531
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	2 cut(s)	80, 311
AfiI	CCNNNNNNNGG	3 cut(s)	22, 199, 497
AgsI	TTSAA	2 cut(s)	352, 457
AjnI	CCWGG	2 cut(s)	45, 540
AluBI	AGCT	7 cut(s)	71, 136, 212, 243, 410, 450, 655
AluI	AGCT	7 cut(s)	71, 136, 212, 243, 410, 450, 655
Alw26I	GTCTC	2 cut(s)	123, 162
Ama87I	CYCGRG	1 cut(s)	635
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	212, 329
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	95, 492
AsuHPI	GGTGA	1 cut(s)	506
AvaI	CYCGRG	1 cut(s)	635
BanII	GRGCYC	1 cut(s)	100
BbsI	GAAGAC	2 cut(s)	261, 647
BbvI	GCAGC	2 cut(s)	199, 341
BccI	CCATC	2 cut(s)	470, 491
BceAI	ACGGC	1 cut(s)	342
BcgI	CGANNNNNNTGC	2 cut(s)	464, 498
BciT130I	CCWGG	2 cut(s)	47, 542
BciVI	GTATCC	1 cut(s)	351
BcnI	CCSGG	2 cut(s)	95, 492
BcoDI	GTCTC	2 cut(s)	123, 162
BfmI	CTRYAG	2 cut(s)	207, 213
BfuI	GTATCC	1 cut(s)	351
BisI	GCNGC	3 cut(s)	213, 233, 330
BlsI	GCNGC	3 cut(s)	214, 234, 331
Bme1390I	CCNGG	4 cut(s)	47, 95, 492, 542
BmeT110I	CYCGRG	1 cut(s)	635
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	191, 539
BmrFI	CCNGG	4 cut(s)	47, 95, 492, 542
BpiI	GAAGAC	2 cut(s)	261, 647
BpmI	CTGGAG	1 cut(s)	563
BpuEI	CTTGAG	1 cut(s)	51
BpuMI	CCSGG	2 cut(s)	95, 492
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	45, 490
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 199, 497
Bse1I	ACTGG	1 cut(s)	628
Bse3DI	GCAATG	3 cut(s)	267, 383, 559
BseBI	CCWGG	2 cut(s)	47, 542
BseDI	CCNNGG	2 cut(s)	45, 490
BseLI	CCNNNNNNNGG	3 cut(s)	22, 199, 497
BseMI	GCAATG	3 cut(s)	267, 383, 559
BseNI	ACTGG	1 cut(s)	628
BseXI	GCAGC	2 cut(s)	199, 341
BseYI	CCCAGC	1 cut(s)	136
Bsh1236I	CGCG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	635
BsiSI	CCGG	2 cut(s)	94, 492
BslFI	GGGAC	2 cut(s)	239, 524
BslI	CCNNNNNNNGG	3 cut(s)	22, 199, 497
BsmAI	GTCTC	2 cut(s)	123, 162
BsmBI	CGTCTC	2 cut(s)	123, 162
BsmFI	GGGAC	2 cut(s)	239, 524
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	635
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	372, 649
BspACI	CCGC	6 cut(s)	7, 108, 114, 233, 272, 531
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	191, 539
BspMAI	CTGCAG	1 cut(s)	217
BsrDI	GCAATG	3 cut(s)	267, 383, 559
BsrI	ACTGG	1 cut(s)	628
BssECI	CCNNGG	2 cut(s)	45, 490
BssMI	GATC	2 cut(s)	372, 649
BssNI	GRCGYC	1 cut(s)	171
Bst2UI	CCWGG	2 cut(s)	47, 542
Bst4CI	ACNGT	4 cut(s)	55, 506, 537, 646
BstACI	GRCGYC	1 cut(s)	171
BstC8I	GCNNGC	2 cut(s)	7, 112
BstDEI	CTNAG	1 cut(s)	40
BstEII	GGTNACC	1 cut(s)	500
BstENI	CCTNNNNNAGG	1 cut(s)	197
BstFNI	CGCG	1 cut(s)	235
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	2 cut(s)	375, 652
BstMAI	GTCTC	2 cut(s)	123, 162
BstMBI	GATC	2 cut(s)	372, 649
BstMWI	GCNNNNNNNGC	1 cut(s)	680
BstNI	CCWGG	2 cut(s)	47, 542
BstPI	GGTNACC	1 cut(s)	500
BstSCI	CCNGG	4 cut(s)	45, 93, 490, 540
BstSFI	CTRYAG	2 cut(s)	207, 213
BstUI	CGCG	1 cut(s)	235
BstV1I	GCAGC	2 cut(s)	199, 341
BstV2I	GAAGAC	2 cut(s)	261, 647
BsuI	GTATCC	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	2 cut(s)	174, 289
Cac8I	GCNNGC	2 cut(s)	7, 112
CfoI	GCGC	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	79, 310
CviAII	CATG	2 cut(s)	59, 368
CviQI	GTAC	2 cut(s)	79, 310
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	2 cut(s)	374, 651
DpnII	GATC	2 cut(s)	372, 649
EciI	GGCGGA	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	100
Eco88I	CYCGRG	1 cut(s)	635
Eco91I	GGTNACC	1 cut(s)	500
EcoNI	CCTNNNNNAGG	1 cut(s)	197
EcoO65I	GGTNACC	1 cut(s)	500
EcoRII	CCWGG	2 cut(s)	45, 540
EcoT38I	GRGCYC	1 cut(s)	100
Esp3I	CGTCTC	2 cut(s)	123, 162
FaeI	CATG	2 cut(s)	62, 371
FaiI	YATR	9 cut(s)	60, 239, 260, 369, 470, 472, 483, 522, 681
FaqI	GGGAC	2 cut(s)	239, 524
FatI	CATG	2 cut(s)	58, 367
FauI	CCCGC	1 cut(s)	14
Fnu4HI	GCNGC	3 cut(s)	213, 233, 330
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	3 cut(s)	213, 233, 330
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	3 cut(s)	213, 233, 330
GsaI	CCCAGC	1 cut(s)	140
GsuI	CTGGAG	1 cut(s)	563
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	94, 492
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	1 cut(s)	237
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	2 cut(s)	62, 371
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HindIII	AAGCTT	1 cut(s)	241
HinfI	GANTC	1 cut(s)	117
HpaII	CCGG	2 cut(s)	94, 492
HphI	GGTGA	1 cut(s)	506
Hpy166II	GTNNAC	2 cut(s)	145, 660
Hpy188III	TCNNGA	4 cut(s)	88, 187, 454, 637
Hpy8I	GTNNAC	2 cut(s)	145, 660
Hpy99I	CGWCG	2 cut(s)	89, 254
HpyAV	CCTTC	4 cut(s)	216, 257, 422, 451
HpyCH4III	ACNGT	4 cut(s)	55, 506, 537, 646
HpyCH4V	TGCA	7 cut(s)	215, 388, 437, 485, 552, 578, 683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	680
HpyF3I	CTNAG	1 cut(s)	40
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	2 cut(s)	62, 371
HspAI	GCGC	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	372, 649
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	2 cut(s)	199, 341
MaeIII	GTNAC	4 cut(s)	284, 500, 526, 605
MalI	GATC	2 cut(s)	374, 651
MboI	GATC	2 cut(s)	372, 649
MboII	GAAGA	3 cut(s)	266, 604, 652
MhlI	GDGCHC	1 cut(s)	100
MlyI	GAGTC	1 cut(s)	126
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	5 cut(s)	43, 203, 310, 384, 508
MseI	TTAA	3 cut(s)	198, 561, 624
MspA1I	CMGCKG	3 cut(s)	110, 212, 655
MspI	CCGG	2 cut(s)	94, 492
MspR9I	CCNGG	4 cut(s)	47, 95, 492, 542
MvaI	CCWGG	2 cut(s)	47, 542
MvnI	CGCG	1 cut(s)	235
MwoI	GCNNNNNNNGC	1 cut(s)	680
NciI	CCSGG	2 cut(s)	95, 492
NdeII	GATC	2 cut(s)	372, 649
NlaIII	CATG	2 cut(s)	62, 371
NlaIV	GGNNCC	2 cut(s)	191, 539
NmuCI	GTSAC	1 cut(s)	284
PaeR7I	CTCGAG	1 cut(s)	635
PfoI	TCCNGGA	1 cut(s)	540
PkrI	GCNGC	3 cut(s)	214, 234, 331
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
Psp6I	CCWGG	2 cut(s)	45, 540
PspEI	GGTNACC	1 cut(s)	500
PspFI	CCCAGC	1 cut(s)	136
PspGI	CCWGG	2 cut(s)	45, 540
PspN4I	GGNNCC	2 cut(s)	191, 539
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	217
PvuII	CAGCTG	2 cut(s)	212, 655
RsaI	GTAC	2 cut(s)	80, 311
RsaNI	GTAC	2 cut(s)	79, 310
SaqAI	TTAA	3 cut(s)	198, 561, 624
SatI	GCNGC	3 cut(s)	213, 233, 330
Sau3AI	GATC	2 cut(s)	372, 649
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	4 cut(s)	47, 95, 492, 542
SduI	GDGCHC	1 cut(s)	100
SfcI	CTRYAG	2 cut(s)	207, 213
Sfr274I	CTCGAG	1 cut(s)	635
SlaI	CTCGAG	1 cut(s)	635
SmlI	CTYRAG	2 cut(s)	66, 635
SmoI	CTYRAG	2 cut(s)	66, 635
SsiI	CCGC	6 cut(s)	7, 108, 114, 233, 272, 531
StyD4I	CCNGG	4 cut(s)	45, 93, 490, 540
TaaI	ACNGT	4 cut(s)	55, 506, 537, 646
TaqI	TCGA	5 cut(s)	87, 252, 315, 636, 648
TatI	WGTACW	2 cut(s)	78, 309
TauI	GCSGC	1 cut(s)	235
Tru1I	TTAA	3 cut(s)	198, 561, 624
Tru9I	TTAA	3 cut(s)	198, 561, 624
TscAI	CASTG	2 cut(s)	181, 289
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	2 cut(s)	212, 329
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	4 cut(s)	9, 75, 172, 284
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	2 cut(s)	181, 289
XagI	CCTNNNNNAGG	1 cut(s)	197
XhoI	CTCGAG	1 cut(s)	635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.