Rh6BG060200

Peptidase of plants and bacteria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001463
Physical Location & Seq
Reverse (-)
9551195 .. 9551707
513 bp
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UTR
Exon/CDS
Intron
Rh6BG060200.1

Sequence Viewer

Length: 405 bp
ATGATAAATACAAGGAGAAAGAGTAACCAGCTAGGGAGGAACTACACCCAGCAAAGGATGAGAGTAGCCACAAATTTCATCTGGAACCTCTTTAAAGAAACCACAGTTGCGGAAAGAAAGAACGTGTCACGAGTAAGCTTGTTCGTGGATGACATGGATGGCATCGCCTATACTATCAACGATGAGATTCACGTTGGGGCAAAATACATGCAGGGTATAAAAGGCGATATCAAAACGGACTTCAATGGAGTGTTATTCCACGAGATGACACACGTGTGGCAGTGGAACGGTAAGGGTCAAGCTCCCGGTGGATTAATAGAAGGAATTGCAGATTTTGTGAGACTGAAGGCCTATTATGTTTCTAATGGGGTGGGTGAAACCGGGCGAGGGTCAGCGTTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSP

Protein Analysis

134

Amino Acids

15.09

Weight (kDa)

9.47

Isoelectric Point (pI)

8.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSP PF04450 10 - 122 2.5e-35 Peptidase of plants and bacteria
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 110
AcsI RAATTY 1 cut(s) 73
AcuI CTGAAG 1 cut(s) 365
AcvI CACGTG 1 cut(s) 274
AfiI CCNNNNNNNGG 2 cut(s) 54, 387
AflIII ACRYGT 3 cut(s) 123, 271, 273
AgsI TTSAA 1 cut(s) 244
AleI CACNNNNGTG 1 cut(s) 274
AluBI AGCT 3 cut(s) 31, 138, 302
AluI AGCT 3 cut(s) 31, 138, 302
Alw26I GTCTC 1 cut(s) 334
AoxI GGCC 1 cut(s) 348
ApoI RAATTY 1 cut(s) 73
AseI ATTAAT 1 cut(s) 314
AsuC2I CCSGG 2 cut(s) 306, 382
AsuHPI GGTGA 1 cut(s) 386
BauI CACGAG 2 cut(s) 129, 260
BbrPI CACGTG 1 cut(s) 274
BccI CCATC 1 cut(s) 152
BcnI CCSGG 2 cut(s) 306, 382
BcoDI GTCTC 1 cut(s) 334
BfaI CTAG 1 cut(s) 32
Bme1390I CCNGG 2 cut(s) 306, 382
BmiI GGNNCC 1 cut(s) 86
BmrFI CCNGG 2 cut(s) 306, 382
BmsI GCATC 1 cut(s) 171
BpuMI CCSGG 2 cut(s) 306, 382
BsaAI YACGTR 1 cut(s) 274
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 387
BseGI GGATG 3 cut(s) 63, 154, 163
BseLI CCNNNNNNNGG 2 cut(s) 54, 387
BseYI CCCAGC 1 cut(s) 48
BshFI GGCC 1 cut(s) 350
BsiSI CCGG 2 cut(s) 306, 381
BslI CCNNNNNNNGG 2 cut(s) 54, 387
BsmAI GTCTC 1 cut(s) 334
BsnI GGCC 1 cut(s) 350
BspACI CCGC 1 cut(s) 110
BspANI GGCC 1 cut(s) 350
BspLI GGNNCC 1 cut(s) 86
BssSI CACGAG 2 cut(s) 129, 260
Bst2BI CACGAG 2 cut(s) 129, 260
Bst4CI ACNGT 2 cut(s) 106, 290
BstBAI YACGTR 1 cut(s) 274
BstF5I GGATG 3 cut(s) 63, 154, 163
BstMAI GTCTC 1 cut(s) 334
BstNSI RCATGY 1 cut(s) 211
BstSCI CCNGG 2 cut(s) 304, 380
BsuRI GGCC 1 cut(s) 350
BtgZI GCGATG 1 cut(s) 148
BtsCI GGATG 3 cut(s) 63, 154, 163
BtsI GCAGTG 1 cut(s) 287
BtsIMutI CAGTG 1 cut(s) 287
CviAII CATG 2 cut(s) 154, 208
CviJI RGCY 5 cut(s) 31, 68, 138, 302, 350
CviKI_1 RGCY 5 cut(s) 31, 68, 138, 302, 350
DraI TTTAAA 1 cut(s) 94
Eco147I AGGCCT 1 cut(s) 350
Eco32I GATATC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 365
Eco72I CACGTG 1 cut(s) 274
EcoRV GATATC 1 cut(s) 229
FaeI CATG 2 cut(s) 157, 211
FaiI YATR 5 cut(s) 155, 171, 209, 218, 357
FatI CATG 2 cut(s) 153, 207
FokI GGATG 3 cut(s) 70, 161, 170
FspBI CTAG 1 cut(s) 32
GsaI CCCAGC 1 cut(s) 52
HaeIII GGCC 1 cut(s) 350
HapII CCGG 2 cut(s) 306, 381
Hin1II CATG 2 cut(s) 157, 211
HindIII AAGCTT 1 cut(s) 136
HinfI GANTC 1 cut(s) 187
HpaII CCGG 2 cut(s) 306, 381
HphI GGTGA 1 cut(s) 386
Hpy188III TCNNGA 2 cut(s) 82, 129
HpyAV CCTTC 2 cut(s) 314, 340
HpyCH4III ACNGT 2 cut(s) 106, 290
HpyCH4IV ACGT 3 cut(s) 123, 192, 273
HpyCH4V TGCA 2 cut(s) 211, 329
HpySE526I ACGT 3 cut(s) 123, 192, 273
Hsp92II CATG 2 cut(s) 157, 211
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 6 cut(s) 41, 62, 67, 197, 319, 394
LweI GCATC 1 cut(s) 171
MaeI CTAG 1 cut(s) 32
MaeII ACGT 3 cut(s) 123, 192, 273
MaeIII GTNAC 2 cut(s) 23, 126
MluCI AATT 2 cut(s) 73, 324
MnlI CCTC 3 cut(s) 30, 98, 380
MseI TTAA 2 cut(s) 93, 314
MslI CAYNNNNRTG 1 cut(s) 274
MspI CCGG 2 cut(s) 306, 381
MspR9I CCNGG 2 cut(s) 306, 382
NciI CCSGG 2 cut(s) 306, 382
NlaIII CATG 2 cut(s) 157, 211
NlaIV GGNNCC 1 cut(s) 86
NmuCI GTSAC 1 cut(s) 126
NspI RCATGY 1 cut(s) 211
OliI CACNNNNGTG 1 cut(s) 274
PceI AGGCCT 1 cut(s) 350
PfeI GAWTC 1 cut(s) 187
PmaCI CACGTG 1 cut(s) 274
PmlI CACGTG 1 cut(s) 274
Ppu21I YACGTR 1 cut(s) 274
PshBI ATTAAT 1 cut(s) 314
PspCI CACGTG 1 cut(s) 274
PspFI CCCAGC 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 86
RseI CAYNNNNRTG 1 cut(s) 274
SaqAI TTAA 2 cut(s) 93, 314
ScrFI CCNGG 2 cut(s) 306, 382
SetI ASST 7 cut(s) 33, 90, 126, 140, 195, 276, 304
SfaNI GCATC 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 274
Sse9I AATT 2 cut(s) 73, 324
SseBI AGGCCT 1 cut(s) 350
SsiI CCGC 1 cut(s) 110
SspMI CTAG 1 cut(s) 32
StuI AGGCCT 1 cut(s) 350
StyD4I CCNGG 2 cut(s) 304, 380
TaaI ACNGT 2 cut(s) 106, 290
TaiI ACGT 3 cut(s) 126, 195, 276
TasI AATT 2 cut(s) 73, 324
TfiI GAWTC 1 cut(s) 187
Tru1I TTAA 2 cut(s) 93, 314
Tru9I TTAA 2 cut(s) 93, 314
TscAI CASTG 1 cut(s) 287
TseFI GTSAC 1 cut(s) 126
Tsp45I GTSAC 1 cut(s) 126
TspDTI ATGAA 1 cut(s) 67
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 1 cut(s) 287
VspI ATTAAT 1 cut(s) 314
XapI RAATTY 1 cut(s) 73
XceI RCATGY 1 cut(s) 211
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.