Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001463

Physical Location & Seq

Genomic Coordinates Reverse (-)

69582325 .. 69583189

Gene Structure 865 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG516500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGATCTTCAATTTTACCGGCTCATCAGTTTCGAAGATGTGTTGAAGGAGTTTGTTGCTAAAAAGTTTATGAAGCTGTGGAGGTTGCTGAGGGATAGCGGTGGCCTTGGCCTGGAACGTGTTGGAAGCAGCAGTAGTGGTGGTTTTAGAGACGAGCTGGGCGTGGACTACACCAAGCAAAGAATGAGAGACGCGACCGAATTCATCTGGAACCTCTTTAAGCAAACTACAGCTGCAGAAAGAAGGGACACGCCGCGCATAAGCTTGTTCGTCGAAGATAGAGAAGGCGTTGCAGTTTCCAGCAATGCGGTGGTTGTGGTGGTTCGTGATCGGCGCCCAACTACAGGTAATCTCAAACTAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSP

Protein Analysis

121

Amino Acids

13.91

Weight (kDa)

9.68

Isoelectric Point (pI)

35.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BSP	PF04450	43 - 102	7e-09	Peptidase of plants and bacteria

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001463)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05000 FvH4_2g05010
prunus_persica	Prupe.3G126200_v2.0.a1 Prupe.6G105600_v2.0.a1 Prupe.6G105700_v2.0.a1 Prupe.8G136400_v2.0.a1 Prupe.8G136500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0244521 RchiOBHm_Chr6g0254761 RchiOBHm_Chr6g0254791 RchiOBHm_Chr6g0254801 RchiOBHm_Chr6g0254841
rosa_laevigata	RLG00000014888 RLG00000014889 RLG00000014890 RLG00000014935
rosa_multiflora	Rmu_sc0000016.1_g000001 Rmu_sc0003679.1_g000012 Rmu_sc0007716.1_g000005 Rmu_sc0007716.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210520 Rroxscaffold_7G00210530 Rroxscaffold_7G00210540 Rroxscaffold_7G00215780
rosa_rugosa	Rorug05G0550900 Rorug05G0554700 Rorug05G0554800 Rorug05G0554800
rosa_samantha	Rh6AG024700 Rh6AG072000 Rh6AG072100 Rh6BG019700 Rh6BG060200 Rh6BG064100 Rh6BG064200 Rh6BG064300 Rh6CG060000 Rh6CG060100 Rh6CG063500 Rh6CG063600 Rh6CG064100 Rh6CG064200 Rh6DG057100 Rh6DG060600 Rh6DG060700 Rh6DG061200 Rh6DG061300 Rh7CG516500
rosa_wichuraiana	Rw6G002010 Rw6G006290 Rw6G006300 Rw6G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	333
AccII	CGCG	2 cut(s)	194, 256
AciI	CCGC	3 cut(s)	99, 254, 308
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	200
AcyI	GRCGYC	1 cut(s)	334
AfiI	CCNNNNNNNGG	2 cut(s)	112, 344
AflIII	ACRYGT	1 cut(s)	118
AgsI	TTSAA	2 cut(s)	11, 46
AjnI	CCWGG	1 cut(s)	111
AluBI	AGCT	4 cut(s)	76, 157, 233, 264
AluI	AGCT	4 cut(s)	76, 157, 233, 264
Alw26I	GTCTC	2 cut(s)	144, 183
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	103, 109
ApeKI	GCWGC	2 cut(s)	129, 233
ApoI	RAATTY	1 cut(s)	200
AspLEI	GCGC	2 cut(s)	258, 336
AsuII	TTCGAA	1 cut(s)	33
BanI	GGYRCC	1 cut(s)	333
BbvCI	CCTCAGC	1 cut(s)	89
BbvI	GCAGC	2 cut(s)	141, 220
BciT130I	CCWGG	1 cut(s)	113
BcoDI	GTCTC	2 cut(s)	144, 183
BfmI	CTRYAG	3 cut(s)	228, 234, 342
BfoI	RGCGCY	1 cut(s)	337
BisI	GCNGC	3 cut(s)	130, 234, 254
BlsI	GCNGC	3 cut(s)	131, 235, 255
Bme1390I	CCNGG	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	212, 335
BmrFI	CCNGG	1 cut(s)	113
Bpu10I	CCTNAGC	1 cut(s)	89
Bpu14I	TTCGAA	1 cut(s)	33
BsaHI	GRCGYC	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 344
Bse118I	RCCGGY	1 cut(s)	18
Bse3DI	GCAATG	1 cut(s)	310
BseBI	CCWGG	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	106
BseLI	CCNNNNNNNGG	2 cut(s)	112, 344
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	80
BseXI	GCAGC	2 cut(s)	141, 220
BseYI	CCCAGC	1 cut(s)	157
Bsh1236I	CGCG	2 cut(s)	194, 256
Bsh1285I	CGRYCG	1 cut(s)	198
BshFI	GGCC	2 cut(s)	105, 111
BshNI	GGYRCC	1 cut(s)	333
BsiEI	CGRYCG	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	19
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	2 cut(s)	112, 344
BsmAI	GTCTC	2 cut(s)	144, 183
BsmBI	CGTCTC	2 cut(s)	144, 183
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	2 cut(s)	105, 111
Bsp119I	TTCGAA	1 cut(s)	33
Bsp143I	GATC	2 cut(s)	4, 328
BspACI	CCGC	3 cut(s)	99, 254, 308
BspANI	GGCC	2 cut(s)	105, 111
BspCNI	CTCAG	1 cut(s)	81
BspFNI	CGCG	2 cut(s)	194, 256
BspLI	GGNNCC	2 cut(s)	212, 335
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	33
BspT107I	GGYRCC	1 cut(s)	333
BsrDI	GCAATG	1 cut(s)	310
BsrFI	RCCGGY	1 cut(s)	18
BssAI	RCCGGY	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	2 cut(s)	4, 328
BssNI	GRCGYC	1 cut(s)	334
BssT1I	CCWWGG	1 cut(s)	106
Bst2UI	CCWGG	1 cut(s)	113
BstACI	GRCGYC	1 cut(s)	334
BstBI	TTCGAA	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	89
BstFNI	CGCG	2 cut(s)	194, 256
BstH2I	RGCGCY	1 cut(s)	337
BstHHI	GCGC	2 cut(s)	258, 336
BstKTI	GATC	2 cut(s)	7, 331
BstMAI	GTCTC	2 cut(s)	144, 183
BstMBI	GATC	2 cut(s)	4, 328
BstMCI	CGRYCG	1 cut(s)	198
BstNI	CCWGG	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	3 cut(s)	228, 234, 342
BstUI	CGCG	2 cut(s)	194, 256
BstV1I	GCAGC	2 cut(s)	141, 220
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	105, 111
CfoI	GCGC	2 cut(s)	258, 336
Cfr10I	RCCGGY	1 cut(s)	18
CseI	GACGC	1 cut(s)	200
CviJI	RGCY	7 cut(s)	22, 76, 105, 111, 157, 233, 264
CviKI_1	RGCY	7 cut(s)	22, 76, 105, 111, 157, 233, 264
DdeI	CTNAG	1 cut(s)	89
DinI	GGCGCC	1 cut(s)	335
DpnI	GATC	2 cut(s)	6, 330
DpnII	GATC	2 cut(s)	4, 328
Eco130I	CCWWGG	1 cut(s)	106
EcoRI	GAATTC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	106
EgeI	GGCGCC	1 cut(s)	335
EheI	GGCGCC	1 cut(s)	335
ErhI	CCWWGG	1 cut(s)	106
Esp3I	CGTCTC	2 cut(s)	144, 183
FaiI	YATR	2 cut(s)	71, 260
FaqI	GGGAC	1 cut(s)	260
Fnu4HI	GCNGC	3 cut(s)	130, 234, 254
Fsp4HI	GCNGC	3 cut(s)	130, 234, 254
GlaI	GCGC	2 cut(s)	257, 335
GluI	GCNGC	3 cut(s)	130, 234, 254
GsaI	CCCAGC	1 cut(s)	161
HaeII	RGCGCY	1 cut(s)	337
HaeIII	GGCC	2 cut(s)	105, 111
HapII	CCGG	1 cut(s)	19
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	2 cut(s)	258, 336
Hin1I	GRCGYC	1 cut(s)	334
Hin6I	GCGC	2 cut(s)	256, 334
HinP1I	GCGC	2 cut(s)	256, 334
HindIII	AAGCTT	1 cut(s)	262
HpaII	CCGG	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188III	TCNNGA	2 cut(s)	208, 326
Hpy8I	GTNNAC	1 cut(s)	166
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	3 cut(s)	40, 237, 278
HpyCH4IV	ACGT	1 cut(s)	118
HpyCH4V	TGCA	2 cut(s)	236, 293
HpyF3I	CTNAG	1 cut(s)	89
HpySE526I	ACGT	1 cut(s)	118
Hsp92I	GRCGYC	1 cut(s)	334
HspAI	GCGC	2 cut(s)	256, 334
KasI	GGCGCC	1 cut(s)	333
Kzo9I	GATC	2 cut(s)	4, 328
LpnPI	CCDG	7 cut(s)	32, 98, 125, 143, 193, 313, 330
Lsp1109I	GCAGC	2 cut(s)	141, 220
MaeII	ACGT	1 cut(s)	118
MalI	GATC	2 cut(s)	6, 330
MboI	GATC	2 cut(s)	4, 328
MboII	GAAGA	2 cut(s)	47, 287
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	3 cut(s)	11, 200, 360
Mly113I	GGCGCC	1 cut(s)	334
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	3 cut(s)	75, 84, 224
MseI	TTAA	2 cut(s)	219, 364
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	1 cut(s)	19
MspR9I	CCNGG	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	113
MvnI	CGCG	2 cut(s)	194, 256
NarI	GGCGCC	1 cut(s)	334
NdeII	GATC	2 cut(s)	4, 328
NlaIV	GGNNCC	2 cut(s)	212, 335
NspV	TTCGAA	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PkrI	GCNGC	3 cut(s)	131, 235, 255
PluTI	GGCGCC	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	111
PspFI	CCCAGC	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	111
PspN4I	GGNNCC	2 cut(s)	212, 335
PstI	CTGCAG	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	233
SaqAI	TTAA	2 cut(s)	219, 364
SatI	GCNGC	3 cut(s)	130, 234, 254
Sau3AI	GATC	2 cut(s)	4, 328
ScrFI	CCNGG	1 cut(s)	113
SetI	ASST	8 cut(s)	78, 86, 121, 159, 216, 235, 266, 349
SfcI	CTRYAG	3 cut(s)	228, 234, 342
SfoI	GGCGCC	1 cut(s)	335
SfuI	TTCGAA	1 cut(s)	33
Sse9I	AATT	3 cut(s)	11, 200, 360
SsiI	CCGC	3 cut(s)	99, 254, 308
SspDI	GGCGCC	1 cut(s)	333
StyD4I	CCNGG	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	106
TaiI	ACGT	1 cut(s)	121
TaqI	TCGA	2 cut(s)	33, 273
TaqII	GACCGA	1 cut(s)	212
TasI	AATT	3 cut(s)	11, 200, 360
TauI	GCSGC	1 cut(s)	256
Tru1I	TTAA	2 cut(s)	219, 364
Tru9I	TTAA	2 cut(s)	219, 364
TseI	GCWGC	2 cut(s)	129, 233
TspDTI	ATGAA	2 cut(s)	86, 193
XapI	RAATTY	1 cut(s)	200
XcmI	CCANNNNNNNNNTGG	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.