Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001463

Physical Location & Seq

Genomic Coordinates Forward (+)

59669215 .. 59669903

Gene Structure 689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014935

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGAAAGTCGCCACAAATTTCATCTGGAACCTCTTTAAAGAAACCACAGCTGCAGAAAGAAAGAACGTGTCACGAGTAAGCTTGTTCGTGGATGACATGGATGGCATCGTGTATACTATCAACGATAAGATTCATGTAGGCGCTAAATACATACAGTGGAACGGTAAGGGTCAAGCTCCCGGCGGATTAATAGAAGGAATTGCAGATTTTGTGAGACTGAAGGCCGATTATGTTCCTAATGGGTGGGTAAAACTGGGCGAGGGTCAGCGTTGGGATGAGGGGTATTCGGTAACTGCACGATTCCTAGACTATTGCAATGGCCTCAAGAAAGGGTTTGTGGCAGAACTTAACAAGAAGATGAGAAATGGTTATAGTGACAATTTCTTTAGCCAGTTGCTTGGGAAGACAGTTGATCAGCTGTGGAAGGACTACAAAGCCAAATTCAGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSP

Protein Analysis

151

Amino Acids

17.16

Weight (kDa)

9.36

Isoelectric Point (pI)

8.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BSP	PF04450	2 - 52	1.7e-08	Peptidase of plants and bacteria
BSP	PF04450	52 - 144	9.8e-41	Peptidase of plants and bacteria

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001463)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05000 FvH4_2g05010
prunus_persica	Prupe.3G126200_v2.0.a1 Prupe.6G105600_v2.0.a1 Prupe.6G105700_v2.0.a1 Prupe.8G136400_v2.0.a1 Prupe.8G136500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0244521 RchiOBHm_Chr6g0254761 RchiOBHm_Chr6g0254791 RchiOBHm_Chr6g0254801 RchiOBHm_Chr6g0254841
rosa_laevigata	RLG00000014888 RLG00000014889 RLG00000014890 RLG00000014935
rosa_multiflora	Rmu_sc0000016.1_g000001 Rmu_sc0003679.1_g000012 Rmu_sc0007716.1_g000005 Rmu_sc0007716.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210520 Rroxscaffold_7G00210530 Rroxscaffold_7G00210540 Rroxscaffold_7G00215780
rosa_rugosa	Rorug05G0550900 Rorug05G0554700 Rorug05G0554800 Rorug05G0554800
rosa_samantha	Rh6AG024700 Rh6AG072000 Rh6AG072100 Rh6BG019700 Rh6BG060200 Rh6BG064100 Rh6BG064200 Rh6BG064300 Rh6CG060000 Rh6CG060100 Rh6CG063500 Rh6CG063600 Rh6CG064100 Rh6CG064200 Rh6DG057100 Rh6DG060600 Rh6DG060700 Rh6DG061200 Rh6DG061300 Rh7CG516500
rosa_wichuraiana	Rw6G002010 Rw6G006290 Rw6G006300 Rw6G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	113
AciI	CCGC	1 cut(s)	183
AcsI	RAATTY	2 cut(s)	16, 440
AcuI	CTGAAG	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	444
AflIII	ACRYGT	1 cut(s)	66
AluBI	AGCT	4 cut(s)	50, 81, 176, 418
AluI	AGCT	4 cut(s)	50, 81, 176, 418
Alw26I	GTCTC	1 cut(s)	208
AoxI	GGCC	2 cut(s)	222, 319
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	2 cut(s)	16, 440
AseI	ATTAAT	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	180
BauI	CACGAG	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	410
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	95
BclI	TGATCA	1 cut(s)	412
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	208
BfaI	CTAG	1 cut(s)	305
BfmI	CTRYAG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	144
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	180
BmiI	GGNNCC	1 cut(s)	29
BmrFI	CCNGG	1 cut(s)	180
BmrI	ACTGGG	1 cut(s)	263
BmsI	GCATC	1 cut(s)	114
BmuI	ACTGGG	1 cut(s)	263
BpiI	GAAGAC	1 cut(s)	410
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	1 cut(s)	444
Bse1I	ACTGG	2 cut(s)	258, 391
Bse3DI	GCAATG	1 cut(s)	322
BseGI	GGATG	3 cut(s)	97, 106, 280
BseLI	CCNNNNNNNGG	1 cut(s)	444
BseMI	GCAATG	1 cut(s)	322
BseNI	ACTGG	2 cut(s)	258, 391
BseXI	GCAGC	1 cut(s)	37
BsgI	GTGCAG	1 cut(s)	279
BshFI	GGCC	2 cut(s)	224, 321
BsiSI	CCGG	1 cut(s)	180
BslI	CCNNNNNNNGG	1 cut(s)	444
BsmAI	GTCTC	1 cut(s)	208
BsnI	GGCC	2 cut(s)	224, 321
Bsp143I	GATC	1 cut(s)	412
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	2 cut(s)	224, 321
BspLI	GGNNCC	1 cut(s)	29
BspMAI	CTGCAG	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	322
BsrI	ACTGG	2 cut(s)	258, 391
BssMI	GATC	1 cut(s)	412
BssNAI	GTATAC	1 cut(s)	114
BssSI	CACGAG	1 cut(s)	72
Bst1107I	GTATAC	1 cut(s)	114
Bst2BI	CACGAG	1 cut(s)	72
Bst4CI	ACNGT	3 cut(s)	156, 164, 409
BstF5I	GGATG	3 cut(s)	97, 106, 280
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	1 cut(s)	415
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	412
BstSCI	CCNGG	1 cut(s)	178
BstSFI	CTRYAG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	37
BstV2I	GAAGAC	1 cut(s)	410
BstXI	CCANNNNNNTGG	1 cut(s)	398
BstZ17I	GTATAC	1 cut(s)	114
BsuRI	GGCC	2 cut(s)	224, 321
BtsCI	GGATG	3 cut(s)	97, 106, 280
BtsIMutI	CAGTG	1 cut(s)	161
CfoI	GCGC	1 cut(s)	143
CviAII	CATG	2 cut(s)	97, 134
CviJI	RGCY	8 cut(s)	50, 81, 176, 224, 321, 390, 418, 437
CviKI_1	RGCY	8 cut(s)	50, 81, 176, 224, 321, 390, 418, 437
DpnI	GATC	1 cut(s)	414
DpnII	GATC	1 cut(s)	412
DraI	TTTAAA	1 cut(s)	37
EciI	GGCGGA	1 cut(s)	198
Eco57I	CTGAAG	1 cut(s)	239
FaeI	CATG	2 cut(s)	100, 137
FaiI	YATR	6 cut(s)	98, 114, 135, 152, 231, 372
FatI	CATG	2 cut(s)	96, 133
FbaI	TGATCA	1 cut(s)	412
FblI	GTMKAC	1 cut(s)	113
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	3 cut(s)	104, 113, 287
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	305
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	1 cut(s)	51
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	224, 321
HapII	CCGG	1 cut(s)	180
HhaI	GCGC	1 cut(s)	143
Hin1II	CATG	2 cut(s)	100, 137
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HindIII	AAGCTT	1 cut(s)	79
HinfI	GANTC	2 cut(s)	130, 300
HpaII	CCGG	1 cut(s)	180
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188III	TCNNGA	4 cut(s)	25, 72, 325, 445
Hpy8I	GTNNAC	1 cut(s)	114
HpyAV	CCTTC	3 cut(s)	188, 214, 418
HpyCH4III	ACNGT	3 cut(s)	156, 164, 409
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	4 cut(s)	53, 203, 296, 315
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	2 cut(s)	100, 137
HspAI	GCGC	1 cut(s)	141
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	1 cut(s)	412
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	5 cut(s)	10, 193, 239, 404, 430
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	3 cut(s)	69, 289, 374
MalI	GATC	1 cut(s)	414
MboI	GATC	1 cut(s)	412
MboII	GAAGA	2 cut(s)	367, 415
MluCI	AATT	4 cut(s)	16, 198, 379, 440
MnlI	CCTC	4 cut(s)	41, 253, 271, 332
MseI	TTAA	3 cut(s)	36, 188, 348
MspA1I	CMGCKG	2 cut(s)	50, 418
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	180
NciI	CCSGG	1 cut(s)	180
NdeII	GATC	1 cut(s)	412
NlaIII	CATG	2 cut(s)	100, 137
NlaIV	GGNNCC	1 cut(s)	29
NmuCI	GTSAC	2 cut(s)	69, 374
PfeI	GAWTC	2 cut(s)	130, 300
PkrI	GCNGC	1 cut(s)	52
PshBI	ATTAAT	1 cut(s)	188
PspN4I	GGNNCC	1 cut(s)	29
PstI	CTGCAG	1 cut(s)	55
PvuII	CAGCTG	2 cut(s)	50, 418
SaqAI	TTAA	3 cut(s)	36, 188, 348
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	1 cut(s)	412
ScrFI	CCNGG	1 cut(s)	180
SetI	ASST	6 cut(s)	33, 52, 69, 83, 178, 420
SfaNI	GCATC	1 cut(s)	114
SfcI	CTRYAG	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	4 cut(s)	16, 198, 379, 440
SsiI	CCGC	1 cut(s)	183
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	1 cut(s)	178
TaaI	ACNGT	3 cut(s)	156, 164, 409
TaiI	ACGT	1 cut(s)	69
TasI	AATT	4 cut(s)	16, 198, 379, 440
TfiI	GAWTC	2 cut(s)	130, 300
Tru1I	TTAA	3 cut(s)	36, 188, 348
Tru9I	TTAA	3 cut(s)	36, 188, 348
TscAI	CASTG	1 cut(s)	161
TseFI	GTSAC	2 cut(s)	69, 374
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	2 cut(s)	69, 374
TspDTI	ATGAA	3 cut(s)	10, 17, 122
TspRI	CASTG	1 cut(s)	161
VspI	ATTAAT	1 cut(s)	188
XapI	RAATTY	2 cut(s)	16, 440
XmiI	GTMKAC	1 cut(s)	113
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.