Rh6CG060000

Peptidase of plants and bacteria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001463
Physical Location & Seq
Reverse (-)
5951940 .. 5952332
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG060000.1

Sequence Viewer

Length: 393 bp
ATGTTACTTAAAATTTCTTGCATCCAGGGTATAAAAGGCGATATCAAAAAGGACTTCAATGGGGTGTTATTCCACGAGATGACACACGTGTGGCAGTGGAACGGTAAGGGTCAAGCTCCCGGCGGATTAATAGAAGGAATTGCAGATTTTGTGAGACTGAAGGCCGACTATGTTCCTAATGGGTGGGTGAAACCGGGCGAGGGTCAGCGTTGGGATGAGGGGTATTCGGTAACTGCACGATTCCTAGACTATTGCAATGGCCTCAAGAAAGGGTTTGTGGCAGAACTTAACAAGAAGATGAGAAACGGTTATAGTGACAATTTCTTTAGGCAGTTGCTTGGGAAGACAGTTGATCAGCTGTGGAAGGACTACAAAGCCAAATTCAGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSP

Protein Analysis

130

Amino Acids

14.95

Weight (kDa)

9.46

Isoelectric Point (pI)

11.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSP PF04450 7 - 124 3.9e-53 Peptidase of plants and bacteria
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 123
AcsI RAATTY 2 cut(s) 12, 380
AcuI CTGAAG 1 cut(s) 179
AcvI CACGTG 1 cut(s) 88
AfiI CCNNNNNNNGG 2 cut(s) 200, 384
AflIII ACRYGT 2 cut(s) 85, 87
AgsI TTSAA 1 cut(s) 58
AjnI CCWGG 1 cut(s) 24
AleI CACNNNNGTG 1 cut(s) 88
AluBI AGCT 2 cut(s) 116, 358
AluI AGCT 2 cut(s) 116, 358
Alw26I GTCTC 1 cut(s) 148
AoxI GGCC 2 cut(s) 162, 259
ApoI RAATTY 2 cut(s) 12, 380
AseI ATTAAT 1 cut(s) 128
AsuC2I CCSGG 2 cut(s) 120, 195
AsuHPI GGTGA 1 cut(s) 199
BauI CACGAG 1 cut(s) 74
BbrPI CACGTG 1 cut(s) 88
BbsI GAAGAC 1 cut(s) 350
BciT130I CCWGG 1 cut(s) 26
BclI TGATCA 1 cut(s) 352
BcnI CCSGG 2 cut(s) 120, 195
BcoDI GTCTC 1 cut(s) 148
BfaI CTAG 1 cut(s) 245
Bme1390I CCNGG 3 cut(s) 26, 120, 195
BmrFI CCNGG 3 cut(s) 26, 120, 195
BmsI GCATC 1 cut(s) 30
BpiI GAAGAC 1 cut(s) 350
BpuEI CTTGAG 1 cut(s) 248
BpuMI CCSGG 2 cut(s) 120, 195
BsaAI YACGTR 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 25
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 384
Bse3DI GCAATG 1 cut(s) 262
BseBI CCWGG 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 25
BseGI GGATG 2 cut(s) 21, 220
BseLI CCNNNNNNNGG 2 cut(s) 200, 384
BseMI GCAATG 1 cut(s) 262
BsgI GTGCAG 1 cut(s) 219
BshFI GGCC 2 cut(s) 164, 261
BsiSI CCGG 2 cut(s) 120, 194
BslI CCNNNNNNNGG 2 cut(s) 200, 384
BsmAI GTCTC 1 cut(s) 148
BsnI GGCC 2 cut(s) 164, 261
Bsp143I GATC 1 cut(s) 352
BspACI CCGC 1 cut(s) 123
BspANI GGCC 2 cut(s) 164, 261
BsrDI GCAATG 1 cut(s) 262
BssECI CCNNGG 1 cut(s) 25
BssMI GATC 1 cut(s) 352
BssSI CACGAG 1 cut(s) 74
Bst2BI CACGAG 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 3 cut(s) 104, 308, 349
BstBAI YACGTR 1 cut(s) 88
BstF5I GGATG 2 cut(s) 21, 220
BstKTI GATC 1 cut(s) 355
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 1 cut(s) 352
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 3 cut(s) 24, 118, 193
BstV2I GAAGAC 1 cut(s) 350
BsuRI GGCC 2 cut(s) 164, 261
BtsCI GGATG 2 cut(s) 21, 220
BtsI GCAGTG 1 cut(s) 101
BtsIMutI CAGTG 1 cut(s) 101
CviJI RGCY 5 cut(s) 116, 164, 261, 358, 377
CviKI_1 RGCY 5 cut(s) 116, 164, 261, 358, 377
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
EciI GGCGGA 1 cut(s) 138
Eco32I GATATC 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 179
Eco72I CACGTG 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 24
EcoRV GATATC 1 cut(s) 43
FaiI YATR 3 cut(s) 32, 171, 312
FbaI TGATCA 1 cut(s) 352
FokI GGATG 2 cut(s) 8, 227
FspBI CTAG 1 cut(s) 245
HaeIII GGCC 2 cut(s) 164, 261
HapII CCGG 2 cut(s) 120, 194
HinfI GANTC 1 cut(s) 240
HpaII CCGG 2 cut(s) 120, 194
HphI GGTGA 1 cut(s) 199
Hpy188III TCNNGA 2 cut(s) 265, 385
HpyAV CCTTC 3 cut(s) 128, 154, 358
HpyCH4III ACNGT 3 cut(s) 104, 308, 349
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 4 cut(s) 21, 143, 236, 255
HpySE526I ACGT 1 cut(s) 87
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 1 cut(s) 352
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 5 cut(s) 11, 38, 133, 207, 370
LweI GCATC 1 cut(s) 30
MaeI CTAG 1 cut(s) 245
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 3 cut(s) 3, 229, 314
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 2 cut(s) 307, 355
MluCI AATT 4 cut(s) 12, 138, 319, 380
MnlI CCTC 3 cut(s) 193, 211, 272
MseI TTAA 3 cut(s) 9, 128, 288
MslI CAYNNNNRTG 1 cut(s) 88
MspA1I CMGCKG 1 cut(s) 358
MspI CCGG 2 cut(s) 120, 194
MspR9I CCNGG 3 cut(s) 26, 120, 195
MvaI CCWGG 1 cut(s) 26
NciI CCSGG 2 cut(s) 120, 195
NdeII GATC 1 cut(s) 352
NmuCI GTSAC 1 cut(s) 314
OliI CACNNNNGTG 1 cut(s) 88
PfeI GAWTC 1 cut(s) 240
PmaCI CACGTG 1 cut(s) 88
PmlI CACGTG 1 cut(s) 88
Ppu21I YACGTR 1 cut(s) 88
PshBI ATTAAT 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 24
PspCI CACGTG 1 cut(s) 88
PspGI CCWGG 1 cut(s) 24
PvuII CAGCTG 1 cut(s) 358
RseI CAYNNNNRTG 1 cut(s) 88
SaqAI TTAA 3 cut(s) 9, 128, 288
Sau3AI GATC 1 cut(s) 352
ScrFI CCNGG 3 cut(s) 26, 120, 195
SetI ASST 3 cut(s) 90, 118, 360
SfaNI GCATC 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 88
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 4 cut(s) 12, 138, 319, 380
SsiI CCGC 1 cut(s) 123
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 3 cut(s) 24, 118, 193
TaaI ACNGT 3 cut(s) 104, 308, 349
TaiI ACGT 1 cut(s) 90
TasI AATT 4 cut(s) 12, 138, 319, 380
TfiI GAWTC 1 cut(s) 240
Tru1I TTAA 3 cut(s) 9, 128, 288
Tru9I TTAA 3 cut(s) 9, 128, 288
TscAI CASTG 1 cut(s) 101
TseFI GTSAC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 314
TspRI CASTG 1 cut(s) 101
VspI ATTAAT 1 cut(s) 128
XapI RAATTY 2 cut(s) 12, 380
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.