Rw6G006310

Peptidase of plants and bacteria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001463
Physical Location & Seq
Forward (+)
9970059 .. 9971683
1625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G006310.1

Sequence Viewer

Length: 522 bp
ATGAGCGCTGCCACAAATTTTATCTGGAACCTCTTTAAAGAAACTACAGCTGCGGAGAGAAAGAACGTGCCGCGAGTAAGCTTGTTCGTGGATGACATGGATGGCATCGCGTATACCATCAACGATGAGATTCACGTCGGGGCTAAATACATACAGGGTATAAAAGGCGACATCAAAACGGACTTCAATGGGGTGTTATTCCACGAGATGACACACGTGTGGCAGTGGAACGGTAAGGGTCAAGCTCCCGGCGGATTAATAGAAGGAATTGCAGATTTTGTGAGGTTGAAGGCCGACTATGTTCCTAATGGGTGGGTGAAACCGGGCGAGGGTCAGCGTTGGGATGAGGGGTATTCGGTTACTGCACGATTCCTAGACTACTGCAATGGCCTCAAGCAAGGGTTTGTGGCAGAACTTAACAAGAAGATGAGAGACGGTTATAGTGACAATTTCTTTAGCCAATTGCTTGGGAAAACAGTAGATCAGCTGTGGAAAGACTACAAAGCTAAATTCGGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSP

Protein Analysis

173

Amino Acids

19.61

Weight (kDa)

6.3

Isoelectric Point (pI)

11.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSP PF04450 2 - 167 1.2e-68 Peptidase of plants and bacteria
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 113
AccII CGCG 2 cut(s) 73, 110
AciI CCGC 3 cut(s) 53, 71, 252
AcsI RAATTY 2 cut(s) 16, 509
AcvI CACGTG 1 cut(s) 217
AfeI AGCGCT 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 329
AflIII ACRYGT 2 cut(s) 214, 216
AgsI TTSAA 2 cut(s) 187, 289
AjiI CACGTC 1 cut(s) 136
AleI CACNNNNGTG 1 cut(s) 217
AluBI AGCT 5 cut(s) 50, 81, 245, 487, 506
AluI AGCT 5 cut(s) 50, 81, 245, 487, 506
Alw26I GTCTC 1 cut(s) 426
Aor51HI AGCGCT 1 cut(s) 7
AoxI GGCC 2 cut(s) 291, 388
ApeKI GCWGC 2 cut(s) 8, 50
ApoI RAATTY 2 cut(s) 16, 509
AseI ATTAAT 1 cut(s) 257
AspLEI GCGC 1 cut(s) 8
AsuC2I CCSGG 2 cut(s) 249, 324
AsuHPI GGTGA 1 cut(s) 328
BauI CACGAG 1 cut(s) 203
BbrPI CACGTG 1 cut(s) 217
BbvI GCAGC 1 cut(s) 37
BccI CCATC 2 cut(s) 95, 125
BcnI CCSGG 2 cut(s) 249, 324
BcoDI GTCTC 1 cut(s) 426
BfaI CTAG 1 cut(s) 374
BfmI CTRYAG 1 cut(s) 45
BfoI RGCGCY 1 cut(s) 9
BisI GCNGC 3 cut(s) 9, 51, 71
BlsI GCNGC 3 cut(s) 10, 52, 72
Bme1390I CCNGG 2 cut(s) 249, 324
BmgBI CACGTC 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 29
BmrFI CCNGG 2 cut(s) 249, 324
BmsI GCATC 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 377
BpuMI CCSGG 2 cut(s) 249, 324
BsaAI YACGTR 1 cut(s) 217
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse3DI GCAATG 1 cut(s) 391
BseGI GGATG 3 cut(s) 97, 106, 349
BseLI CCNNNNNNNGG 1 cut(s) 329
BseMI GCAATG 1 cut(s) 391
BseXI GCAGC 1 cut(s) 37
BsgI GTGCAG 1 cut(s) 348
Bsh1236I CGCG 2 cut(s) 73, 110
BshFI GGCC 2 cut(s) 293, 390
BsiSI CCGG 2 cut(s) 249, 323
BslI CCNNNNNNNGG 1 cut(s) 329
BsmAI GTCTC 1 cut(s) 426
BsmBI CGTCTC 1 cut(s) 426
BsnI GGCC 2 cut(s) 293, 390
Bsp143I GATC 1 cut(s) 481
BspACI CCGC 3 cut(s) 53, 71, 252
BspANI GGCC 2 cut(s) 293, 390
BspFNI CGCG 2 cut(s) 73, 110
BspLI GGNNCC 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 391
BssMI GATC 1 cut(s) 481
BssNAI GTATAC 1 cut(s) 114
BssSI CACGAG 1 cut(s) 203
Bst1107I GTATAC 1 cut(s) 114
Bst2BI CACGAG 1 cut(s) 203
Bst4CI ACNGT 3 cut(s) 233, 437, 478
BstBAI YACGTR 1 cut(s) 217
BstF5I GGATG 3 cut(s) 97, 106, 349
BstFNI CGCG 2 cut(s) 73, 110
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 1 cut(s) 484
BstMAI GTCTC 1 cut(s) 426
BstMBI GATC 1 cut(s) 481
BstSCI CCNGG 2 cut(s) 247, 322
BstSFI CTRYAG 1 cut(s) 45
BstUI CGCG 2 cut(s) 73, 110
BstV1I GCAGC 1 cut(s) 37
BstXI CCANNNNNNTGG 1 cut(s) 467
BstZ17I GTATAC 1 cut(s) 114
BsuRI GGCC 2 cut(s) 293, 390
BtgZI GCGATG 1 cut(s) 91
BtrI CACGTC 1 cut(s) 136
BtsCI GGATG 3 cut(s) 97, 106, 349
BtsI GCAGTG 1 cut(s) 230
BtsIMutI CAGTG 1 cut(s) 230
CfoI GCGC 1 cut(s) 8
CviAII CATG 1 cut(s) 97
CviJI RGCY 9 cut(s) 50, 81, 143, 245, 293, 390, 459, 487, 506
CviKI_1 RGCY 9 cut(s) 50, 81, 143, 245, 293, 390, 459, 487, 506
DpnI GATC 1 cut(s) 483
DpnII GATC 1 cut(s) 481
DraI TTTAAA 1 cut(s) 37
EciI GGCGGA 1 cut(s) 267
Eco47III AGCGCT 1 cut(s) 7
Eco72I CACGTG 1 cut(s) 217
Esp3I CGTCTC 1 cut(s) 426
FaeI CATG 1 cut(s) 100
FaiI YATR 6 cut(s) 98, 114, 152, 161, 300, 441
FatI CATG 1 cut(s) 96
FblI GTMKAC 1 cut(s) 113
Fnu4HI GCNGC 3 cut(s) 9, 51, 71
FokI GGATG 3 cut(s) 104, 113, 356
Fsp4HI GCNGC 3 cut(s) 9, 51, 71
FspBI CTAG 1 cut(s) 374
GlaI GCGC 1 cut(s) 7
GluI GCNGC 3 cut(s) 9, 51, 71
HaeII RGCGCY 1 cut(s) 9
HaeIII GGCC 2 cut(s) 293, 390
HapII CCGG 2 cut(s) 249, 323
HhaI GCGC 1 cut(s) 8
Hin1II CATG 1 cut(s) 100
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 79
HinfI GANTC 2 cut(s) 130, 369
HpaII CCGG 2 cut(s) 249, 323
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 1 cut(s) 114
Hpy188III TCNNGA 2 cut(s) 25, 514
Hpy8I GTNNAC 1 cut(s) 114
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 2 cut(s) 257, 283
HpyCH4III ACNGT 3 cut(s) 233, 437, 478
HpyCH4IV ACGT 3 cut(s) 66, 135, 216
HpyCH4V TGCA 3 cut(s) 272, 365, 384
HpySE526I ACGT 3 cut(s) 66, 135, 216
Hsp92II CATG 1 cut(s) 100
HspAI GCGC 1 cut(s) 6
Kzo9I GATC 1 cut(s) 481
LmnI GCTCC 1 cut(s) 250
LpnPI CCDG 4 cut(s) 10, 140, 262, 336
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 1 cut(s) 114
MaeI CTAG 1 cut(s) 374
MaeII ACGT 3 cut(s) 66, 135, 216
MaeIII GTNAC 2 cut(s) 358, 443
MalI GATC 1 cut(s) 483
MboI GATC 1 cut(s) 481
MboII GAAGA 1 cut(s) 436
MfeI CAATTG 1 cut(s) 461
MluCI AATT 5 cut(s) 16, 267, 448, 461, 509
MnlI CCTC 5 cut(s) 41, 276, 322, 340, 401
MseI TTAA 3 cut(s) 36, 257, 417
MslI CAYNNNNRTG 1 cut(s) 217
MspA1I CMGCKG 2 cut(s) 50, 487
MspI CCGG 2 cut(s) 249, 323
MspR9I CCNGG 2 cut(s) 249, 324
MunI CAATTG 1 cut(s) 461
MvnI CGCG 2 cut(s) 73, 110
NciI CCSGG 2 cut(s) 249, 324
NdeII GATC 1 cut(s) 481
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 29
NmuCI GTSAC 1 cut(s) 443
OliI CACNNNNGTG 1 cut(s) 217
PfeI GAWTC 2 cut(s) 130, 369
PkrI GCNGC 3 cut(s) 10, 52, 72
PmaCI CACGTG 1 cut(s) 217
PmlI CACGTG 1 cut(s) 217
Ppu21I YACGTR 1 cut(s) 217
PshBI ATTAAT 1 cut(s) 257
PspCI CACGTG 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 29
PvuII CAGCTG 2 cut(s) 50, 487
RseI CAYNNNNRTG 1 cut(s) 217
SaqAI TTAA 3 cut(s) 36, 257, 417
SatI GCNGC 3 cut(s) 9, 51, 71
Sau3AI GATC 1 cut(s) 481
ScrFI CCNGG 2 cut(s) 249, 324
SfaNI GCATC 1 cut(s) 114
SfcI CTRYAG 1 cut(s) 45
SmiMI CAYNNNNRTG 1 cut(s) 217
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
Sse9I AATT 5 cut(s) 16, 267, 448, 461, 509
SsiI CCGC 3 cut(s) 53, 71, 252
SspMI CTAG 1 cut(s) 374
StyD4I CCNGG 2 cut(s) 247, 322
TaaI ACNGT 3 cut(s) 233, 437, 478
TaiI ACGT 3 cut(s) 69, 138, 219
TasI AATT 5 cut(s) 16, 267, 448, 461, 509
TauI GCSGC 1 cut(s) 73
TfiI GAWTC 2 cut(s) 130, 369
Tru1I TTAA 3 cut(s) 36, 257, 417
Tru9I TTAA 3 cut(s) 36, 257, 417
TscAI CASTG 1 cut(s) 230
TseFI GTSAC 1 cut(s) 443
TseI GCWGC 2 cut(s) 8, 50
Tsp45I GTSAC 1 cut(s) 443
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 1 cut(s) 230
VspI ATTAAT 1 cut(s) 257
XapI RAATTY 2 cut(s) 16, 509
XmiI GTMKAC 1 cut(s) 113
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.