Rmu_sc0000016.1_g000001

Peptidase of plants and bacteria

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000016.1
Physical Location & Seq
Forward (+)
2793 .. 3107
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000016.1_g000001.1.cds

Sequence Viewer

Length: 315 bp
atgacacacgtgtggcagtggaacggtaagggtcaagctcccggcggattaatagaaggaattgcagattttgtgaggttgaaggccgactatgttcctaatgggtgggtgaaaccgggcgagggtcagcgttgggatgaggggtattcggttactgcacgattcctagactactgcaatggcctcaagcaagggtttgtggcagaacttaacaagaagatgagagacggttatagtgacaatttctttagccaattgcttgggaaaacagtagatcagctgtggaaagactacaaagctaaattcgggaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

11.85

Weight (kDa)

8.69

Isoelectric Point (pI)

17.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 45
AcsI RAATTY 1 cut(s) 302
AcvI CACGTG 1 cut(s) 10
AfiI CCNNNNNNNGG 1 cut(s) 122
AflIII ACRYGT 2 cut(s) 7, 9
AgsI TTSAA 1 cut(s) 82
AleI CACNNNNGTG 1 cut(s) 10
AluBI AGCT 3 cut(s) 38, 280, 299
AluI AGCT 3 cut(s) 38, 280, 299
Alw26I GTCTC 1 cut(s) 219
AoxI GGCC 2 cut(s) 84, 181
ApoI RAATTY 1 cut(s) 302
AseI ATTAAT 1 cut(s) 50
AsuC2I CCSGG 2 cut(s) 42, 117
AsuHPI GGTGA 1 cut(s) 121
BbrPI CACGTG 1 cut(s) 10
BcnI CCSGG 2 cut(s) 42, 117
BcoDI GTCTC 1 cut(s) 219
BfaI CTAG 1 cut(s) 167
Bme1390I CCNGG 2 cut(s) 42, 117
BmrFI CCNGG 2 cut(s) 42, 117
BpuEI CTTGAG 1 cut(s) 170
BpuMI CCSGG 2 cut(s) 42, 117
BsaAI YACGTR 1 cut(s) 10
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse3DI GCAATG 1 cut(s) 184
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMI GCAATG 1 cut(s) 184
BsgI GTGCAG 1 cut(s) 141
BshFI GGCC 2 cut(s) 86, 183
BsiSI CCGG 2 cut(s) 42, 116
BslI CCNNNNNNNGG 1 cut(s) 122
BsmAI GTCTC 1 cut(s) 219
BsmBI CGTCTC 1 cut(s) 219
BsnI GGCC 2 cut(s) 86, 183
Bsp143I GATC 1 cut(s) 274
BspACI CCGC 1 cut(s) 45
BspANI GGCC 2 cut(s) 86, 183
BsrDI GCAATG 1 cut(s) 184
BssMI GATC 1 cut(s) 274
Bst4CI ACNGT 3 cut(s) 26, 230, 271
BstBAI YACGTR 1 cut(s) 10
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 1 cut(s) 277
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 1 cut(s) 274
BstSCI CCNGG 2 cut(s) 40, 115
BstXI CCANNNNNNTGG 1 cut(s) 260
BsuRI GGCC 2 cut(s) 86, 183
BtsCI GGATG 1 cut(s) 142
BtsI GCAGTG 1 cut(s) 23
BtsIMutI CAGTG 1 cut(s) 23
CviJI RGCY 6 cut(s) 38, 86, 183, 252, 280, 299
CviKI_1 RGCY 6 cut(s) 38, 86, 183, 252, 280, 299
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
EciI GGCGGA 1 cut(s) 60
Eco72I CACGTG 1 cut(s) 10
Esp3I CGTCTC 1 cut(s) 219
FaiI YATR 2 cut(s) 93, 234
FokI GGATG 1 cut(s) 149
FspBI CTAG 1 cut(s) 167
HaeIII GGCC 2 cut(s) 86, 183
HapII CCGG 2 cut(s) 42, 116
HinfI GANTC 1 cut(s) 162
HpaII CCGG 2 cut(s) 42, 116
HphI GGTGA 1 cut(s) 121
Hpy188III TCNNGA 1 cut(s) 307
HpyAV CCTTC 2 cut(s) 50, 76
HpyCH4III ACNGT 3 cut(s) 26, 230, 271
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 3 cut(s) 65, 158, 177
HpySE526I ACGT 1 cut(s) 9
Kzo9I GATC 1 cut(s) 274
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 2 cut(s) 55, 129
MaeI CTAG 1 cut(s) 167
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 2 cut(s) 151, 236
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 1 cut(s) 229
MfeI CAATTG 1 cut(s) 254
MluCI AATT 4 cut(s) 60, 241, 254, 302
MnlI CCTC 4 cut(s) 69, 115, 133, 194
MseI TTAA 2 cut(s) 50, 210
MslI CAYNNNNRTG 1 cut(s) 10
MspA1I CMGCKG 1 cut(s) 280
MspI CCGG 2 cut(s) 42, 116
MspR9I CCNGG 2 cut(s) 42, 117
MunI CAATTG 1 cut(s) 254
NciI CCSGG 2 cut(s) 42, 117
NdeII GATC 1 cut(s) 274
NmuCI GTSAC 1 cut(s) 236
OliI CACNNNNGTG 1 cut(s) 10
PfeI GAWTC 1 cut(s) 162
PmaCI CACGTG 1 cut(s) 10
PmlI CACGTG 1 cut(s) 10
Ppu21I YACGTR 1 cut(s) 10
PshBI ATTAAT 1 cut(s) 50
PspCI CACGTG 1 cut(s) 10
PvuII CAGCTG 1 cut(s) 280
RseI CAYNNNNRTG 1 cut(s) 10
SaqAI TTAA 2 cut(s) 50, 210
Sau3AI GATC 1 cut(s) 274
ScrFI CCNGG 2 cut(s) 42, 117
SetI ASST 5 cut(s) 12, 40, 80, 282, 301
SmiMI CAYNNNNRTG 1 cut(s) 10
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 4 cut(s) 60, 241, 254, 302
SsiI CCGC 1 cut(s) 45
SspMI CTAG 1 cut(s) 167
StyD4I CCNGG 2 cut(s) 40, 115
TaaI ACNGT 3 cut(s) 26, 230, 271
TaiI ACGT 1 cut(s) 12
TasI AATT 4 cut(s) 60, 241, 254, 302
TfiI GAWTC 1 cut(s) 162
Tru1I TTAA 2 cut(s) 50, 210
Tru9I TTAA 2 cut(s) 50, 210
TscAI CASTG 1 cut(s) 23
TseFI GTSAC 1 cut(s) 236
Tsp45I GTSAC 1 cut(s) 236
TspRI CASTG 1 cut(s) 23
VspI ATTAAT 1 cut(s) 50
XapI RAATTY 1 cut(s) 302
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.