Rw6G006290

Peptidase of plants and bacteria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001463
Physical Location & Seq
Forward (+)
9958214 .. 9959279
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G006290.1

Sequence Viewer

Length: 687 bp
ATGGCTCGCTTTCTCCTTTCATTTGTCTTTGCTTCTCTCTTAGCCCTAGCTACTGTCCATGAAACTCAAGCTATTGAGTACATCGTCGAGAACCGGGCTCTCAGCACCCCTGGTGGAGTCCGTTTTAGAGACGAGCTGGGCTTGGACTACACCAAGCAAAGAATGAGAGACGCGACTGATTTCATCTGGAACCTCTTTAAGGAAACTACAGCTGCAGAGAGAAGGGACACGCCACGCATAAGCTTGTTCGTCGAAGACAGAGAAGGCATTGCGGTTTCGAGCGGTGACATTATTCATGTTTCAGCCAAGTACATCCAGGACCTACCGGCAGCAAACCTCAAAAACGACTTCAACTGGGTACTTTACCATGAGATCACACACTCATTGCAGAGGAATGGAAAAGGTCAAGCTCCTACCGGAGTGGTAGAAGGGATTGCTGAGTTTGTGACCTTGAAGTCTGGTTTTATACCCGCCTCGTTTGCAAAACCCGGTGATGGTAACAGTTGGGATGAGGGTTACAGCGTAACTGCACGGTTCCTGGATTATTGCAATGGCCTTAAAGACGGGTTTGTGGCAGAACTTAACAAGAAGATGATAGATGGTTACAGTAACGATTTCTTTAACCAGTTGCTCGGGAAGACGGTCGATCAGCTGTGGACCGACTATAAAGCCAAATATGCAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSP

Protein Analysis

228

Amino Acids

25.64

Weight (kDa)

5.43

Isoelectric Point (pI)

17.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSP PF04450 24 - 222 1.3e-62 Peptidase of plants and bacteria
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 454
AccBSI CCGCTC 1 cut(s) 282
AccII CGCG 1 cut(s) 173
AciI CCGC 3 cut(s) 272, 282, 471
AfaI GTAC 3 cut(s) 80, 311, 360
AfiI CCNNNNNNNGG 2 cut(s) 199, 494
AgsI TTSAA 2 cut(s) 352, 454
AjnI CCWGG 3 cut(s) 109, 315, 537
AluBI AGCT 7 cut(s) 50, 71, 136, 212, 243, 410, 652
AluI AGCT 7 cut(s) 50, 71, 136, 212, 243, 410, 652
Alw26I GTCTC 2 cut(s) 123, 162
Ama87I CYCGRG 1 cut(s) 632
AoxI GGCC 1 cut(s) 553
ApeKI GCWGC 2 cut(s) 212, 329
AspS9I GGNCC 2 cut(s) 319, 657
AsuC2I CCSGG 2 cut(s) 95, 489
AsuHPI GGTGA 2 cut(s) 296, 503
AvaI CYCGRG 1 cut(s) 632
AvaII GGWCC 2 cut(s) 319, 657
BanII GRGCYC 1 cut(s) 100
BbsI GAAGAC 2 cut(s) 261, 644
BbvI GCAGC 2 cut(s) 199, 341
BccI CCATC 2 cut(s) 488, 593
BciT130I CCWGG 3 cut(s) 111, 317, 539
BcnI CCSGG 2 cut(s) 95, 489
BcoDI GTCTC 2 cut(s) 123, 162
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 2 cut(s) 207, 213
BisI GCNGC 2 cut(s) 213, 330
BlsI GCNGC 2 cut(s) 214, 331
Bme1390I CCNGG 5 cut(s) 95, 111, 317, 489, 539
Bme18I GGWCC 2 cut(s) 319, 657
BmeT110I CYCGRG 1 cut(s) 632
BmgT120I GGNCC 2 cut(s) 319, 657
BmiI GGNNCC 2 cut(s) 191, 536
BmrFI CCNGG 5 cut(s) 95, 111, 317, 489, 539
BmrI ACTGGG 1 cut(s) 364
BmuI ACTGGG 1 cut(s) 364
BpiI GAAGAC 2 cut(s) 261, 644
BpuEI CTTGAG 1 cut(s) 51
BpuMI CCSGG 2 cut(s) 95, 489
BsaJI CCNNGG 1 cut(s) 109
BsaWI WCCGGW 1 cut(s) 416
Bsc4I CCNNNNNNNGG 2 cut(s) 199, 494
Bse118I RCCGGY 1 cut(s) 325
Bse1I ACTGG 2 cut(s) 359, 625
Bse3DI GCAATG 3 cut(s) 267, 383, 556
BseBI CCWGG 3 cut(s) 111, 317, 539
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 2 cut(s) 312, 514
BseLI CCNNNNNNNGG 2 cut(s) 199, 494
BseMI GCAATG 3 cut(s) 267, 383, 556
BseMII CTCAG 2 cut(s) 115, 429
BseNI ACTGG 2 cut(s) 359, 625
BseXI GCAGC 2 cut(s) 199, 341
BseYI CCCAGC 1 cut(s) 136
BsgI GTGCAG 1 cut(s) 513
Bsh1236I CGCG 1 cut(s) 173
Bsh1285I CGRYCG 1 cut(s) 645
BshFI GGCC 1 cut(s) 555
BsiEI CGRYCG 1 cut(s) 645
BsiHKCI CYCGRG 1 cut(s) 632
BsiSI CCGG 4 cut(s) 94, 326, 417, 489
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 2 cut(s) 199, 494
BsmAI GTCTC 2 cut(s) 123, 162
BsmBI CGTCTC 2 cut(s) 123, 162
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 1 cut(s) 555
BsoBI CYCGRG 1 cut(s) 632
Bsp1286I GDGCHC 1 cut(s) 100
Bsp143I GATC 2 cut(s) 372, 646
BspACI CCGC 3 cut(s) 272, 282, 471
BspANI GGCC 1 cut(s) 555
BspCNI CTCAG 2 cut(s) 114, 430
BspFNI CGCG 1 cut(s) 173
BspLI GGNNCC 2 cut(s) 191, 536
BspMAI CTGCAG 1 cut(s) 217
BsrBI CCGCTC 1 cut(s) 282
BsrDI GCAATG 3 cut(s) 267, 383, 556
BsrFI RCCGGY 1 cut(s) 325
BsrI ACTGG 2 cut(s) 359, 625
BssAI RCCGGY 1 cut(s) 325
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 2 cut(s) 372, 646
Bst2UI CCWGG 3 cut(s) 111, 317, 539
Bst4CI ACNGT 5 cut(s) 55, 503, 534, 608, 643
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 3 cut(s) 40, 101, 438
BstENI CCTNNNNNAGG 1 cut(s) 197
BstF5I GGATG 2 cut(s) 312, 514
BstFNI CGCG 1 cut(s) 173
BstKTI GATC 2 cut(s) 375, 649
BstMAI GTCTC 2 cut(s) 123, 162
BstMBI GATC 2 cut(s) 372, 646
BstMCI CGRYCG 1 cut(s) 645
BstMWI GCNNNNNNNGC 2 cut(s) 479, 677
BstNI CCWGG 3 cut(s) 111, 317, 539
BstSCI CCNGG 5 cut(s) 93, 109, 315, 487, 537
BstSFI CTRYAG 2 cut(s) 207, 213
BstUI CGCG 1 cut(s) 173
BstV1I GCAGC 2 cut(s) 199, 341
BstV2I GAAGAC 2 cut(s) 261, 644
BsuRI GGCC 1 cut(s) 555
BtsCI GGATG 2 cut(s) 312, 514
Cac8I GCNNGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 325
Cfr13I GGNCC 2 cut(s) 319, 657
CseI GACGC 1 cut(s) 179
Csp6I GTAC 3 cut(s) 79, 310, 359
CviAII CATG 3 cut(s) 59, 296, 368
CviQI GTAC 3 cut(s) 79, 310, 359
DdeI CTNAG 3 cut(s) 40, 101, 438
DpnI GATC 2 cut(s) 374, 648
DpnII GATC 2 cut(s) 372, 646
DrdI GACNNNNNNGTC 1 cut(s) 454
DseDI GACNNNNNNGTC 1 cut(s) 454
Eco24I GRGCYC 1 cut(s) 100
Eco47I GGWCC 2 cut(s) 319, 657
Eco88I CYCGRG 1 cut(s) 632
EcoNI CCTNNNNNAGG 1 cut(s) 197
EcoO109I RGGNCCY 1 cut(s) 319
EcoRII CCWGG 3 cut(s) 109, 315, 537
EcoT38I GRGCYC 1 cut(s) 100
Esp3I CGTCTC 2 cut(s) 123, 162
FaeI CATG 3 cut(s) 62, 299, 371
FaiI YATR 7 cut(s) 60, 239, 297, 369, 467, 666, 678
FaqI GGGAC 1 cut(s) 239
FatI CATG 3 cut(s) 58, 295, 367
FauI CCCGC 1 cut(s) 478
Fnu4HI GCNGC 2 cut(s) 213, 330
FokI GGATG 2 cut(s) 299, 521
FriOI GRGCYC 1 cut(s) 100
Fsp4HI GCNGC 2 cut(s) 213, 330
FspBI CTAG 1 cut(s) 47
GluI GCNGC 2 cut(s) 213, 330
GsaI CCCAGC 1 cut(s) 140
HaeIII GGCC 1 cut(s) 555
HapII CCGG 4 cut(s) 94, 326, 417, 489
HgaI GACGC 1 cut(s) 179
Hin1II CATG 3 cut(s) 62, 299, 371
HindIII AAGCTT 1 cut(s) 241
HinfI GANTC 1 cut(s) 117
HpaII CCGG 4 cut(s) 94, 326, 417, 489
HphI GGTGA 2 cut(s) 296, 503
Hpy166II GTNNAC 1 cut(s) 657
Hpy188III TCNNGA 3 cut(s) 88, 187, 634
Hpy8I GTNNAC 1 cut(s) 657
Hpy99I CGWCG 2 cut(s) 89, 254
HpyAV CCTTC 3 cut(s) 216, 257, 422
HpyCH4III ACNGT 5 cut(s) 55, 503, 534, 608, 643
HpyCH4V TGCA 6 cut(s) 215, 388, 482, 530, 549, 680
HpyF10VI GCNNNNNNNGC 2 cut(s) 479, 677
HpyF3I CTNAG 3 cut(s) 40, 101, 438
Hsp92II CATG 3 cut(s) 62, 299, 371
Kzo9I GATC 2 cut(s) 372, 646
LmnI GCTCC 1 cut(s) 415
Lsp1109I GCAGC 2 cut(s) 199, 341
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 7 cut(s) 284, 445, 497, 515, 523, 602, 608
MalI GATC 2 cut(s) 374, 648
MbiI CCGCTC 1 cut(s) 282
MboI GATC 2 cut(s) 372, 646
MboII GAAGA 3 cut(s) 266, 601, 649
MhlI GDGCHC 1 cut(s) 100
MlyI GAGTC 1 cut(s) 126
MnlI CCTC 5 cut(s) 203, 347, 384, 484, 505
MseI TTAA 4 cut(s) 198, 558, 582, 621
MspA1I CMGCKG 2 cut(s) 212, 652
MspI CCGG 4 cut(s) 94, 326, 417, 489
MspR9I CCNGG 5 cut(s) 95, 111, 317, 489, 539
MvaI CCWGG 3 cut(s) 111, 317, 539
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 2 cut(s) 479, 677
NciI CCSGG 2 cut(s) 95, 489
NdeII GATC 2 cut(s) 372, 646
NlaIII CATG 3 cut(s) 62, 299, 371
NlaIV GGNNCC 2 cut(s) 191, 536
NmuCI GTSAC 2 cut(s) 284, 445
PfoI TCCNGGA 2 cut(s) 315, 537
PkrI GCNGC 2 cut(s) 214, 331
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PpuMI RGGWCCY 1 cut(s) 319
Psp5II RGGWCCY 1 cut(s) 319
Psp6I CCWGG 3 cut(s) 109, 315, 537
PspFI CCCAGC 1 cut(s) 136
PspGI CCWGG 3 cut(s) 109, 315, 537
PspN4I GGNNCC 2 cut(s) 191, 536
PspPI GGNCC 2 cut(s) 319, 657
PspPPI RGGWCCY 1 cut(s) 319
PstI CTGCAG 1 cut(s) 217
PvuII CAGCTG 2 cut(s) 212, 652
RsaI GTAC 3 cut(s) 80, 311, 360
RsaNI GTAC 3 cut(s) 79, 310, 359
SaqAI TTAA 4 cut(s) 198, 558, 582, 621
SatI GCNGC 2 cut(s) 213, 330
Sau3AI GATC 2 cut(s) 372, 646
Sau96I GGNCC 2 cut(s) 319, 657
SchI GAGTC 1 cut(s) 126
ScrFI CCNGG 5 cut(s) 95, 111, 317, 489, 539
SduI GDGCHC 1 cut(s) 100
SfcI CTRYAG 2 cut(s) 207, 213
SinI GGWCC 2 cut(s) 319, 657
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
SsiI CCGC 3 cut(s) 272, 282, 471
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 5 cut(s) 93, 109, 315, 487, 537
TaaI ACNGT 5 cut(s) 55, 503, 534, 608, 643
TaqI TCGA 4 cut(s) 87, 252, 278, 645
TaqII GACCGA 1 cut(s) 674
TatI WGTACW 2 cut(s) 78, 309
Tru1I TTAA 4 cut(s) 198, 558, 582, 621
Tru9I TTAA 4 cut(s) 198, 558, 582, 621
TseFI GTSAC 2 cut(s) 284, 445
TseI GCWGC 2 cut(s) 212, 329
Tsp45I GTSAC 2 cut(s) 284, 445
TspDTI ATGAA 4 cut(s) 9, 75, 172, 284
TspGWI ACGGA 1 cut(s) 110
VpaK11BI GGWCC 2 cut(s) 319, 657
XagI CCTNNNNNAGG 1 cut(s) 197
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.