Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001463

Physical Location & Seq

Genomic Coordinates Forward (+)

6271583 .. 6272911

Gene Structure 1329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG061200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCTCGCTTTCTCCTTTCATTGATCTTTGCTTCTCTCTTAGCCCTAGCTACTGTCCATGAAACTCAAGCTATTGAGTACATCGTCGAGAACCGGGCTCTCAGCACCCCCGGCGGAGTCCGTTTTAGAGACGAGCTGGGCGTGGACTACACCAAGCAAAGAATGAGAGACGCGACCGAATTCATCTGGAACCTCTTTAAGCAAACTACAGCTGCAGAGCGAAGGGACACGCCGCGCATAAGCTTGTTCGTCGAAGATAGAGAAGGCGTTGCAGTTTCCAGCAATGACATTATTCATGTTTCAGCCAAGTACATCGAGGACCTACCGGCAGCAAACCTCAAAAACGACTTCAATTGGGTACTTTACCATGAGATCACACACTCATTGCAGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSP

Protein Analysis

131

Amino Acids

15.1

Weight (kDa)

5.52

Isoelectric Point (pI)

32.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BSP	PF04450	24 - 131	2.4e-23	Peptidase of plants and bacteria

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001463)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05000 FvH4_2g05010
prunus_persica	Prupe.3G126200_v2.0.a1 Prupe.6G105600_v2.0.a1 Prupe.6G105700_v2.0.a1 Prupe.8G136400_v2.0.a1 Prupe.8G136500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0244521 RchiOBHm_Chr6g0254761 RchiOBHm_Chr6g0254791 RchiOBHm_Chr6g0254801 RchiOBHm_Chr6g0254841
rosa_laevigata	RLG00000014888 RLG00000014889 RLG00000014890 RLG00000014935
rosa_multiflora	Rmu_sc0000016.1_g000001 Rmu_sc0003679.1_g000012 Rmu_sc0007716.1_g000005 Rmu_sc0007716.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210520 Rroxscaffold_7G00210530 Rroxscaffold_7G00210540 Rroxscaffold_7G00215780
rosa_rugosa	Rorug05G0550900 Rorug05G0554700 Rorug05G0554800 Rorug05G0554800
rosa_samantha	Rh6AG024700 Rh6AG072000 Rh6AG072100 Rh6BG019700 Rh6BG060200 Rh6BG064100 Rh6BG064200 Rh6BG064300 Rh6CG060000 Rh6CG060100 Rh6CG063500 Rh6CG063600 Rh6CG064100 Rh6CG064200 Rh6DG057100 Rh6DG060600 Rh6DG060700 Rh6DG061200 Rh6DG061300 Rh7CG516500
rosa_wichuraiana	Rw6G002010 Rw6G006290 Rw6G006300 Rw6G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	173, 235
AciI	CCGC	2 cut(s)	114, 233
AcsI	RAATTY	1 cut(s)	179
AfaI	GTAC	3 cut(s)	80, 311, 360
AgsI	TTSAA	1 cut(s)	352
AluBI	AGCT	5 cut(s)	50, 71, 136, 212, 243
AluI	AGCT	5 cut(s)	50, 71, 136, 212, 243
Alw26I	GTCTC	2 cut(s)	123, 162
ApeKI	GCWGC	2 cut(s)	212, 329
ApoI	RAATTY	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	1 cut(s)	319
AsuC2I	CCSGG	2 cut(s)	95, 111
AvaII	GGWCC	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	100
BbvI	GCAGC	2 cut(s)	199, 341
BcnI	CCSGG	2 cut(s)	95, 111
BcoDI	GTCTC	2 cut(s)	123, 162
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	2 cut(s)	207, 213
BisI	GCNGC	3 cut(s)	213, 233, 330
BlsI	GCNGC	3 cut(s)	214, 234, 331
Bme1390I	CCNGG	2 cut(s)	95, 111
Bme18I	GGWCC	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	319
BmiI	GGNNCC	1 cut(s)	191
BmrFI	CCNGG	2 cut(s)	95, 111
BpuEI	CTTGAG	1 cut(s)	51
BpuMI	CCSGG	2 cut(s)	95, 111
BsaJI	CCNNGG	1 cut(s)	109
Bse118I	RCCGGY	1 cut(s)	325
Bse3DI	GCAATG	2 cut(s)	289, 383
BseDI	CCNNGG	1 cut(s)	109
BseMI	GCAATG	2 cut(s)	289, 383
BseMII	CTCAG	1 cut(s)	115
BseXI	GCAGC	2 cut(s)	199, 341
BseYI	CCCAGC	1 cut(s)	136
Bsh1236I	CGCG	2 cut(s)	173, 235
Bsh1285I	CGRYCG	1 cut(s)	177
BsiEI	CGRYCG	1 cut(s)	177
BsiSI	CCGG	3 cut(s)	94, 111, 326
BslFI	GGGAC	1 cut(s)	239
BsmAI	GTCTC	2 cut(s)	123, 162
BsmBI	CGTCTC	2 cut(s)	123, 162
BsmFI	GGGAC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	24, 372
BspACI	CCGC	2 cut(s)	114, 233
BspCNI	CTCAG	1 cut(s)	114
BspFNI	CGCG	2 cut(s)	173, 235
BspLI	GGNNCC	1 cut(s)	191
BspMAI	CTGCAG	1 cut(s)	217
BsrDI	GCAATG	2 cut(s)	289, 383
BsrFI	RCCGGY	1 cut(s)	325
BssAI	RCCGGY	1 cut(s)	325
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	2 cut(s)	24, 372
Bst4CI	ACNGT	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	40, 101
BstFNI	CGCG	2 cut(s)	173, 235
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	2 cut(s)	27, 375
BstMAI	GTCTC	2 cut(s)	123, 162
BstMBI	GATC	2 cut(s)	24, 372
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	1 cut(s)	111
BstSCI	CCNGG	2 cut(s)	93, 109
BstSFI	CTRYAG	2 cut(s)	207, 213
BstUI	CGCG	2 cut(s)	173, 235
BstV1I	GCAGC	2 cut(s)	199, 341
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	1 cut(s)	395
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	1 cut(s)	237
Cfr10I	RCCGGY	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	319
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	3 cut(s)	79, 310, 359
CviAII	CATG	3 cut(s)	59, 296, 368
CviJI	RGCY	9 cut(s)	5, 44, 50, 71, 98, 136, 212, 243, 305
CviKI_1	RGCY	9 cut(s)	5, 44, 50, 71, 98, 136, 212, 243, 305
CviQI	GTAC	3 cut(s)	79, 310, 359
DdeI	CTNAG	2 cut(s)	40, 101
DpnI	GATC	2 cut(s)	26, 374
DpnII	GATC	2 cut(s)	24, 372
EciI	GGCGGA	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	319
EcoO109I	RGGNCCY	1 cut(s)	319
EcoRI	GAATTC	1 cut(s)	179
EcoT38I	GRGCYC	1 cut(s)	100
Esp3I	CGTCTC	2 cut(s)	123, 162
FaeI	CATG	3 cut(s)	62, 299, 371
FaiI	YATR	4 cut(s)	60, 239, 297, 369
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	3 cut(s)	58, 295, 367
Fnu4HI	GCNGC	3 cut(s)	213, 233, 330
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	3 cut(s)	213, 233, 330
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	3 cut(s)	213, 233, 330
GsaI	CCCAGC	1 cut(s)	140
HapII	CCGG	3 cut(s)	94, 111, 326
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	3 cut(s)	62, 299, 371
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HindIII	AAGCTT	1 cut(s)	241
HinfI	GANTC	1 cut(s)	117
HpaII	CCGG	3 cut(s)	94, 111, 326
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188III	TCNNGA	2 cut(s)	88, 187
Hpy8I	GTNNAC	1 cut(s)	145
Hpy99I	CGWCG	2 cut(s)	89, 254
HpyAV	CCTTC	2 cut(s)	216, 257
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4V	TGCA	3 cut(s)	215, 272, 388
HpyF10VI	GCNNNNNNNGC	1 cut(s)	111
HpyF3I	CTNAG	2 cut(s)	40, 101
Hsp92II	CATG	3 cut(s)	62, 299, 371
HspAI	GCGC	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	24, 372
LpnPI	CCDG	6 cut(s)	107, 122, 124, 172, 292, 339
Lsp1109I	GCAGC	2 cut(s)	199, 341
MaeI	CTAG	1 cut(s)	47
MalI	GATC	2 cut(s)	26, 374
MboI	GATC	2 cut(s)	24, 372
MboII	GAAGA	1 cut(s)	266
MfeI	CAATTG	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	2 cut(s)	179, 352
MlyI	GAGTC	1 cut(s)	126
MnlI	CCTC	3 cut(s)	203, 310, 347
MseI	TTAA	1 cut(s)	198
MslI	CAYNNNNRTG	1 cut(s)	388
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	3 cut(s)	94, 111, 326
MspR9I	CCNGG	2 cut(s)	95, 111
MunI	CAATTG	1 cut(s)	352
MvnI	CGCG	2 cut(s)	173, 235
MwoI	GCNNNNNNNGC	1 cut(s)	111
NciI	CCSGG	2 cut(s)	95, 111
NdeII	GATC	2 cut(s)	24, 372
NlaIII	CATG	3 cut(s)	62, 299, 371
NlaIV	GGNNCC	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PkrI	GCNGC	3 cut(s)	214, 234, 331
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PpuMI	RGGWCCY	1 cut(s)	319
Psp5II	RGGWCCY	1 cut(s)	319
PspFI	CCCAGC	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	191
PspPI	GGNCC	1 cut(s)	319
PspPPI	RGGWCCY	1 cut(s)	319
PstI	CTGCAG	1 cut(s)	217
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	3 cut(s)	80, 311, 360
RsaNI	GTAC	3 cut(s)	79, 310, 359
RseI	CAYNNNNRTG	1 cut(s)	388
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	3 cut(s)	213, 233, 330
Sau3AI	GATC	2 cut(s)	24, 372
Sau96I	GGNCC	1 cut(s)	319
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	2 cut(s)	95, 111
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	8 cut(s)	52, 73, 138, 195, 214, 245, 324, 339
SfcI	CTRYAG	2 cut(s)	207, 213
SinI	GGWCC	1 cut(s)	319
SmiMI	CAYNNNNRTG	1 cut(s)	388
SmlI	CTYRAG	1 cut(s)	66
SmoI	CTYRAG	1 cut(s)	66
Sse9I	AATT	2 cut(s)	179, 352
SsiI	CCGC	2 cut(s)	114, 233
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	2 cut(s)	93, 109
TaaI	ACNGT	1 cut(s)	55
TaqI	TCGA	3 cut(s)	87, 252, 315
TaqII	GACCGA	1 cut(s)	191
TasI	AATT	2 cut(s)	179, 352
TatI	WGTACW	2 cut(s)	78, 309
TauI	GCSGC	1 cut(s)	235
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	1 cut(s)	395
TseI	GCWGC	2 cut(s)	212, 329
TspDTI	ATGAA	4 cut(s)	9, 75, 172, 284
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	319
XapI	RAATTY	1 cut(s)	179
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.