Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001463

Physical Location & Seq

Genomic Coordinates Forward (+)

66340475 .. 66343859

Gene Structure 3385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00215780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCTCGCTTTCTCCTTTCATTGGTCTTTGCCTCTCTCTTAGCCCTGGCTACTGTCCATGAAACTAGAGCTATTGAGTACATCGTCGAGAACCGGGCTCTCAACACCGCTGGCGGAGTCCGTTTTAGAGACGAGCTGGGCGTGGACTACACCAAGCAAAGAATGAGAGACGCCACTGATTTCATCTGGAACCTCTTTAAGGAAACTACAGCTGCAGAGAGAAGGGACACGCCGCGCATAAGCTTGTTCGTCGAAGACATAGAAGGCATTGCGGTTTCCAGCAGTGACATTATTCATTTTTCAGCGAAGTACATCGAGGGTCTAACGGCAGCAAAACTAAAAAACGACTTCAGTGGGATACTTTACCATGAGATCACACACTCATTGCAGAGGAATGGAAAAGGTCAAGCTCCTGGTGGATTGGTAGAAGGGATTGCAGACTTTGTGAGCTTCTTGAAGGCTGGTTTTATATACGATGGCTATGCAAACCCCGGTGATGGGAACCGTTGGGACGAGGGTTATGGCGTAACCGCACGGTTCCTGGAGTATTGCAATGGCCTTAAAGACGGGTTTGTTGCAGAACTCAACAAGAAGATGATAGATGGTTACAGCAACGATTTCTTTAACCAGTTGCTCGGGAAGACAGCGGTGGAGGTGGTTTTGGCTCTATGTGGTGTTGTCGGTTCTCATCGGGTTGAGAGGAATAATGGCAATATTCATCGTCGAGTTGCTAGAGGTCGGGATAAAGATTTTGCCTCTGGCTATTTTGACGGCAACGAAGGCTTTGTTGCTAGTACGCTTATAGGTGGTAGGGATGTTTCTATGGCTAAGGGTGTTGTAATTGTGGCTGGTATGGCTCTCAACGACGATAACATGATGACTGCTTTTGTTGACGACGACGATAAGCTCTGGTTTCCTCTAGGGTTACGGCTTCTGCTGGTTGGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSP

Protein Analysis

316

Amino Acids

34.83

Weight (kDa)

5.47

Isoelectric Point (pI)

22.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BSP	PF04450	24 - 219	3.4e-57	Peptidase of plants and bacteria

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001463)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05000 FvH4_2g05010
prunus_persica	Prupe.3G126200_v2.0.a1 Prupe.6G105600_v2.0.a1 Prupe.6G105700_v2.0.a1 Prupe.8G136400_v2.0.a1 Prupe.8G136500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0244521 RchiOBHm_Chr6g0254761 RchiOBHm_Chr6g0254791 RchiOBHm_Chr6g0254801 RchiOBHm_Chr6g0254841
rosa_laevigata	RLG00000014888 RLG00000014889 RLG00000014890 RLG00000014935
rosa_multiflora	Rmu_sc0000016.1_g000001 Rmu_sc0003679.1_g000012 Rmu_sc0007716.1_g000005 Rmu_sc0007716.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210520 Rroxscaffold_7G00210530 Rroxscaffold_7G00210540 Rroxscaffold_7G00215780
rosa_rugosa	Rorug05G0550900 Rorug05G0554700 Rorug05G0554800 Rorug05G0554800
rosa_samantha	Rh6AG024700 Rh6AG072000 Rh6AG072100 Rh6BG019700 Rh6BG060200 Rh6BG064100 Rh6BG064200 Rh6BG064300 Rh6CG060000 Rh6CG060100 Rh6CG063500 Rh6CG063600 Rh6CG064100 Rh6CG064200 Rh6DG057100 Rh6DG060600 Rh6DG060700 Rh6DG061200 Rh6DG061300 Rh7CG516500
rosa_wichuraiana	Rw6G002010 Rw6G006290 Rw6G006300 Rw6G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	235
AciI	CCGC	6 cut(s)	108, 114, 233, 272, 531, 647
AcuI	CTGAAG	1 cut(s)	334
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	3 cut(s)	80, 311, 796
AfiI	CCNNNNNNNGG	4 cut(s)	22, 199, 497, 498
AgsI	TTSAA	1 cut(s)	457
AjnI	CCWGG	3 cut(s)	45, 412, 540
AluBI	AGCT	7 cut(s)	71, 136, 212, 243, 410, 450, 907
AluI	AGCT	7 cut(s)	71, 136, 212, 243, 410, 450, 907
Alw26I	GTCTC	2 cut(s)	123, 162
Ama87I	CYCGRG	1 cut(s)	635
AoxI	GGCC	1 cut(s)	556
ApeKI	GCWGC	2 cut(s)	212, 329
AspLEI	GCGC	1 cut(s)	237
AsuC2I	CCSGG	2 cut(s)	95, 492
AsuHPI	GGTGA	1 cut(s)	506
AvaI	CYCGRG	1 cut(s)	635
BanII	GRGCYC	1 cut(s)	100
BbsI	GAAGAC	2 cut(s)	261, 647
BbvI	GCAGC	2 cut(s)	199, 341
BccI	CCATC	3 cut(s)	470, 491, 596
BceAI	ACGGC	3 cut(s)	342, 787, 944
BcgI	CGANNNNNNTGC	2 cut(s)	464, 498
BciT130I	CCWGG	3 cut(s)	47, 414, 542
BciVI	GTATCC	1 cut(s)	351
BcnI	CCSGG	2 cut(s)	95, 492
BcoDI	GTCTC	2 cut(s)	123, 162
BfaI	CTAG	4 cut(s)	66, 732, 792, 920
BfmI	CTRYAG	2 cut(s)	207, 213
BfuI	GTATCC	1 cut(s)	351
BisI	GCNGC	3 cut(s)	213, 233, 330
BlsI	GCNGC	3 cut(s)	214, 234, 331
Bme1390I	CCNGG	5 cut(s)	47, 95, 414, 492, 542
BmeT110I	CYCGRG	1 cut(s)	635
BmiI	GGNNCC	3 cut(s)	191, 503, 539
BmrFI	CCNGG	5 cut(s)	47, 95, 414, 492, 542
BpiI	GAAGAC	2 cut(s)	261, 647
BpmI	CTGGAG	1 cut(s)	563
Bpu10I	CCTNAGC	1 cut(s)	828
BpuMI	CCSGG	2 cut(s)	95, 492
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	45, 490
Bsc4I	CCNNNNNNNGG	4 cut(s)	22, 199, 497, 498
Bse1I	ACTGG	1 cut(s)	628
Bse3DI	GCAATG	3 cut(s)	267, 383, 559
BseBI	CCWGG	3 cut(s)	47, 414, 542
BseDI	CCNNGG	2 cut(s)	45, 490
BseGI	GGATG	1 cut(s)	820
BseLI	CCNNNNNNNGG	4 cut(s)	22, 199, 497, 498
BseMI	GCAATG	3 cut(s)	267, 383, 559
BseNI	ACTGG	1 cut(s)	628
BseXI	GCAGC	2 cut(s)	199, 341
BseYI	CCCAGC	1 cut(s)	136
Bsh1236I	CGCG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	558
BsiHKCI	CYCGRG	1 cut(s)	635
BsiSI	CCGG	2 cut(s)	94, 492
BslFI	GGGAC	2 cut(s)	239, 524
BslI	CCNNNNNNNGG	4 cut(s)	22, 199, 497, 498
BsmAI	GTCTC	2 cut(s)	123, 162
BsmBI	CGTCTC	2 cut(s)	123, 162
BsmFI	GGGAC	2 cut(s)	239, 524
BsnI	GGCC	1 cut(s)	558
BsoBI	CYCGRG	1 cut(s)	635
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	1 cut(s)	372
BspACI	CCGC	6 cut(s)	108, 114, 233, 272, 531, 647
BspANI	GGCC	1 cut(s)	558
BspFNI	CGCG	1 cut(s)	235
BspLI	GGNNCC	3 cut(s)	191, 503, 539
BspMAI	CTGCAG	1 cut(s)	217
BsrDI	GCAATG	3 cut(s)	267, 383, 559
BsrI	ACTGG	1 cut(s)	628
BssECI	CCNNGG	2 cut(s)	45, 490
BssMI	GATC	1 cut(s)	372
BssNI	GRCGYC	1 cut(s)	171
Bst2UI	CCWGG	3 cut(s)	47, 414, 542
Bst4CI	ACNGT	3 cut(s)	55, 506, 537
BstACI	GRCGYC	1 cut(s)	171
BstC8I	GCNNGC	2 cut(s)	7, 112
BstDEI	CTNAG	2 cut(s)	40, 828
BstENI	CCTNNNNNAGG	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	820
BstFNI	CGCG	1 cut(s)	235
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	1 cut(s)	375
BstMAI	GTCTC	2 cut(s)	123, 162
BstMBI	GATC	1 cut(s)	372
BstMWI	GCNNNNNNNGC	3 cut(s)	780, 854, 943
BstNI	CCWGG	3 cut(s)	47, 414, 542
BstSCI	CCNGG	5 cut(s)	45, 93, 412, 490, 540
BstSFI	CTRYAG	2 cut(s)	207, 213
BstUI	CGCG	1 cut(s)	235
BstV1I	GCAGC	2 cut(s)	199, 341
BstV2I	GAAGAC	2 cut(s)	261, 647
BsuI	GTATCC	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	558
BtsCI	GGATG	1 cut(s)	820
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	3 cut(s)	174, 289, 358
Cac8I	GCNNGC	2 cut(s)	7, 112
CfoI	GCGC	1 cut(s)	237
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	3 cut(s)	79, 310, 795
CviAII	CATG	3 cut(s)	59, 368, 874
CviQI	GTAC	3 cut(s)	79, 310, 795
DdeI	CTNAG	2 cut(s)	40, 828
DpnI	GATC	1 cut(s)	374
DpnII	GATC	1 cut(s)	372
EciI	GGCGGA	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	334
Eco88I	CYCGRG	1 cut(s)	635
EcoNI	CCTNNNNNAGG	1 cut(s)	197
EcoRII	CCWGG	3 cut(s)	45, 412, 540
EcoT38I	GRGCYC	1 cut(s)	100
Esp3I	CGTCTC	2 cut(s)	123, 162
FaeI	CATG	3 cut(s)	62, 371, 877
FaqI	GGGAC	2 cut(s)	239, 524
FatI	CATG	3 cut(s)	58, 367, 873
Fnu4HI	GCNGC	3 cut(s)	213, 233, 330
FokI	GGATG	1 cut(s)	827
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	3 cut(s)	213, 233, 330
FspBI	CTAG	4 cut(s)	66, 732, 792, 920
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	3 cut(s)	213, 233, 330
GsaI	CCCAGC	1 cut(s)	140
GsuI	CTGGAG	1 cut(s)	563
HaeIII	GGCC	1 cut(s)	558
HapII	CCGG	2 cut(s)	94, 492
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	1 cut(s)	237
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	3 cut(s)	62, 371, 877
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HincII	GTYRAC	1 cut(s)	892
HindII	GTYRAC	1 cut(s)	892
HindIII	AAGCTT	1 cut(s)	241
HinfI	GANTC	1 cut(s)	117
HpaII	CCGG	2 cut(s)	94, 492
HphI	GGTGA	1 cut(s)	506
Hpy166II	GTNNAC	2 cut(s)	145, 892
Hpy188III	TCNNGA	5 cut(s)	88, 187, 454, 637, 740
Hpy8I	GTNNAC	2 cut(s)	145, 892
Hpy99I	CGWCG	6 cut(s)	89, 254, 726, 869, 899, 902
HpyAV	CCTTC	5 cut(s)	216, 257, 422, 451, 773
HpyCH4III	ACNGT	3 cut(s)	55, 506, 537
HpyCH4V	TGCA	6 cut(s)	215, 388, 437, 485, 552, 578
HpyF10VI	GCNNNNNNNGC	3 cut(s)	780, 854, 943
HpyF3I	CTNAG	2 cut(s)	40, 828
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	3 cut(s)	62, 371, 877
HspAI	GCGC	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	372
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	2 cut(s)	199, 341
MaeI	CTAG	4 cut(s)	66, 732, 792, 920
MaeIII	GTNAC	4 cut(s)	284, 526, 605, 924
MalI	GATC	1 cut(s)	374
MboI	GATC	1 cut(s)	372
MboII	GAAGA	3 cut(s)	266, 604, 652
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	1 cut(s)	840
MlyI	GAGTC	1 cut(s)	126
MseI	TTAA	3 cut(s)	198, 561, 624
MspA1I	CMGCKG	3 cut(s)	110, 212, 647
MspI	CCGG	2 cut(s)	94, 492
MspR9I	CCNGG	5 cut(s)	47, 95, 414, 492, 542
MvaI	CCWGG	3 cut(s)	47, 414, 542
MvnI	CGCG	1 cut(s)	235
MwoI	GCNNNNNNNGC	3 cut(s)	780, 854, 943
NciI	CCSGG	2 cut(s)	95, 492
NdeII	GATC	1 cut(s)	372
NlaIII	CATG	3 cut(s)	62, 371, 877
NlaIV	GGNNCC	3 cut(s)	191, 503, 539
NmuCI	GTSAC	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PfoI	TCCNGGA	1 cut(s)	540
PkrI	GCNGC	3 cut(s)	214, 234, 331
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
Psp6I	CCWGG	3 cut(s)	45, 412, 540
PspFI	CCCAGC	1 cut(s)	136
PspGI	CCWGG	3 cut(s)	45, 412, 540
PspN4I	GGNNCC	3 cut(s)	191, 503, 539
PstI	CTGCAG	1 cut(s)	217
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	3 cut(s)	80, 311, 796
RsaNI	GTAC	3 cut(s)	79, 310, 795
SaqAI	TTAA	3 cut(s)	198, 561, 624
SatI	GCNGC	3 cut(s)	213, 233, 330
Sau3AI	GATC	1 cut(s)	372
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	5 cut(s)	47, 95, 414, 492, 542
SduI	GDGCHC	1 cut(s)	100
SfcI	CTRYAG	2 cut(s)	207, 213
Sse9I	AATT	1 cut(s)	840
SsiI	CCGC	6 cut(s)	108, 114, 233, 272, 531, 647
SspI	AATATT	1 cut(s)	715
SspMI	CTAG	4 cut(s)	66, 732, 792, 920
StyD4I	CCNGG	5 cut(s)	45, 93, 412, 490, 540
TaaI	ACNGT	3 cut(s)	55, 506, 537
TaqI	TCGA	4 cut(s)	87, 252, 315, 724
TasI	AATT	1 cut(s)	840
TatI	WGTACW	2 cut(s)	78, 309
TauI	GCSGC	1 cut(s)	235
Tru1I	TTAA	3 cut(s)	198, 561, 624
Tru9I	TTAA	3 cut(s)	198, 561, 624
TscAI	CASTG	3 cut(s)	181, 289, 358
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	2 cut(s)	212, 329
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	5 cut(s)	9, 75, 172, 284, 707
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	3 cut(s)	181, 289, 358
XagI	CCTNNNNNAGG	1 cut(s)	197
XspI	CTAG	4 cut(s)	66, 732, 792, 920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.