Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001463

Physical Location & Seq

Genomic Coordinates Forward (+)

4072484 .. 4073246

Gene Structure 763 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g05010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCTCGTTTTCTCTTGTCTTTCATCCTTGCCTCTGTCTTAGCCCTAGCTACTCTTCATGGAACCCATGCAGTCGAGTTCGTCGTCTTTAACCGGGCTCTCAACACCCCCGGCGGAGTCCGCTTTAGAAACCAGCTCGGGAGGAACTACACCCAGCAAAGGATGAGAGCCGCCACAGATTTCATCTGGAACCTCTTTAAGGAAACCGCAGCCGCCGACAGAAAGAGCGTGGCTCGAGTAAGCTTGTTCGTCGATGACATGGATGGCATCGCCTATACTATCAACGATGAGATTCACGTCGGGGCTAAATACATACAGGGCATAAAAGGCGATATCAAAACGGACTTCAATGGAGTGTTGTTCCACGAGATGACACACGTATGGCAGTGGAACGGTAAGGGTCAAGCTCCGGGTGGCTTAATAGAAGGGATTGCAGATTTTGTGAGGTTGAAGGCCAACTATGTTCCTAATGGGTCGGTGAAACCCGGCCAGGGTCAGCGTTGGGATGAAGGGTATTCGATTACTGCACGATTCCTAGACTATTGCAATGGCCTCAAGAAAGGGTTTGTGGCAGAACTTAACAAGAAGATGAGAAACGGTTACAGTGACAGTTTCTTTAACCAGCTGCTCGGGAAGACAGTTGATCAGCTCTGGAAGGACTACAAAGCCAAATTTGGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSP

Protein Analysis

228

Amino Acids

25.55

Weight (kDa)

9.54

Isoelectric Point (pI)

9.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BSP	PF04450	24 - 221	1.1e-74	Peptidase of plants and bacteria

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001463)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05000 FvH4_2g05010
prunus_persica	Prupe.3G126200_v2.0.a1 Prupe.6G105600_v2.0.a1 Prupe.6G105700_v2.0.a1 Prupe.8G136400_v2.0.a1 Prupe.8G136500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0244521 RchiOBHm_Chr6g0254761 RchiOBHm_Chr6g0254791 RchiOBHm_Chr6g0254801 RchiOBHm_Chr6g0254841
rosa_laevigata	RLG00000014888 RLG00000014889 RLG00000014890 RLG00000014935
rosa_multiflora	Rmu_sc0000016.1_g000001 Rmu_sc0003679.1_g000012 Rmu_sc0007716.1_g000005 Rmu_sc0007716.1_g000006
rosa_roxburghii	Rroxscaffold_7G00210520 Rroxscaffold_7G00210530 Rroxscaffold_7G00210540 Rroxscaffold_7G00215780
rosa_rugosa	Rorug05G0550900 Rorug05G0554700 Rorug05G0554800 Rorug05G0554800
rosa_samantha	Rh6AG024700 Rh6AG072000 Rh6AG072100 Rh6BG019700 Rh6BG060200 Rh6BG064100 Rh6BG064200 Rh6BG064300 Rh6CG060000 Rh6CG060100 Rh6CG063500 Rh6CG063600 Rh6CG064100 Rh6CG064200 Rh6DG057100 Rh6DG060600 Rh6DG060700 Rh6DG061200 Rh6DG061300 Rh7CG516500
rosa_wichuraiana	Rw6G002010 Rw6G006290 Rw6G006300 Rw6G006310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	114, 121, 171, 207, 213
AcoI	YGGCCR	1 cut(s)	487
AcsI	RAATTY	1 cut(s)	671
AfiI	CCNNNNNNNGG	4 cut(s)	159, 199, 491, 675
AflIII	ACRYGT	1 cut(s)	376
AgsI	TTSAA	2 cut(s)	349, 451
AjiI	CACGTC	1 cut(s)	298
AjnI	CCWGG	1 cut(s)	489
AluBI	AGCT	6 cut(s)	50, 136, 243, 407, 625, 649
AluI	AGCT	6 cut(s)	50, 136, 243, 407, 625, 649
Ama87I	CYCGRG	3 cut(s)	137, 234, 629
AoxI	GGCC	3 cut(s)	453, 487, 550
ApeKI	GCWGC	2 cut(s)	209, 625
ApoI	RAATTY	1 cut(s)	671
AsuC2I	CCSGG	4 cut(s)	95, 111, 411, 486
AsuHPI	GGTGA	1 cut(s)	490
AvaI	CYCGRG	3 cut(s)	137, 234, 629
BanII	GRGCYC	1 cut(s)	100
BauI	CACGAG	1 cut(s)	365
BbsI	GAAGAC	1 cut(s)	641
BbvI	GCAGC	2 cut(s)	221, 612
BccI	CCATC	1 cut(s)	257
BciT130I	CCWGG	1 cut(s)	491
BclI	TGATCA	1 cut(s)	643
BcnI	CCSGG	4 cut(s)	95, 111, 411, 486
BfaI	CTAG	2 cut(s)	47, 536
BisI	GCNGC	4 cut(s)	171, 210, 213, 626
BlsI	GCNGC	4 cut(s)	172, 211, 214, 627
Bme1390I	CCNGG	5 cut(s)	95, 111, 411, 486, 491
BmeT110I	CYCGRG	3 cut(s)	137, 234, 629
BmgBI	CACGTC	1 cut(s)	298
BmiI	GGNNCC	2 cut(s)	64, 191
BmrFI	CCNGG	5 cut(s)	95, 111, 411, 486, 491
BmsI	GCATC	1 cut(s)	276
BpiI	GAAGAC	1 cut(s)	641
BplI	GAGNNNNNCTC	2 cut(s)	217, 249
BpuEI	CTTGAG	1 cut(s)	539
BpuMI	CCSGG	4 cut(s)	95, 111, 411, 486
BsaAI	YACGTR	1 cut(s)	379
BsaJI	CCNNGG	2 cut(s)	109, 490
Bsc4I	CCNNNNNNNGG	4 cut(s)	159, 199, 491, 675
Bse3DI	GCAATG	1 cut(s)	553
BseBI	CCWGG	1 cut(s)	491
BseDI	CCNNGG	2 cut(s)	109, 490
BseGI	GGATG	4 cut(s)	24, 168, 268, 511
BseLI	CCNNNNNNNGG	4 cut(s)	159, 199, 491, 675
BseMI	GCAATG	1 cut(s)	553
BseXI	GCAGC	2 cut(s)	221, 612
BseYI	CCCAGC	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	510
BshFI	GGCC	3 cut(s)	455, 489, 552
BsiHKCI	CYCGRG	3 cut(s)	137, 234, 629
BsiSI	CCGG	4 cut(s)	94, 111, 410, 486
BslI	CCNNNNNNNGG	4 cut(s)	159, 199, 491, 675
BsnI	GGCC	3 cut(s)	455, 489, 552
BsoBI	CYCGRG	3 cut(s)	137, 234, 629
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	1 cut(s)	643
BspACI	CCGC	5 cut(s)	114, 121, 171, 207, 213
BspANI	GGCC	3 cut(s)	455, 489, 552
BspLI	GGNNCC	2 cut(s)	64, 191
BsrDI	GCAATG	1 cut(s)	553
BssECI	CCNNGG	2 cut(s)	109, 490
BssMI	GATC	1 cut(s)	643
BssSI	CACGAG	1 cut(s)	365
Bst2BI	CACGAG	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	491
Bst4CI	ACNGT	5 cut(s)	395, 599, 605, 611, 640
Bst6I	CTCTTC	1 cut(s)	60
BstBAI	YACGTR	1 cut(s)	379
BstDEI	CTNAG	1 cut(s)	40
BstENI	CCTNNNNNAGG	1 cut(s)	197
BstF5I	GGATG	4 cut(s)	24, 168, 268, 511
BstKTI	GATC	1 cut(s)	646
BstMBI	GATC	1 cut(s)	643
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 327
BstNI	CCWGG	1 cut(s)	491
BstSCI	CCNGG	5 cut(s)	93, 109, 409, 484, 489
BstV1I	GCAGC	2 cut(s)	221, 612
BstV2I	GAAGAC	1 cut(s)	641
BsuRI	GGCC	3 cut(s)	455, 489, 552
BtgZI	GCGATG	1 cut(s)	253
BtrI	CACGTC	1 cut(s)	298
BtsCI	GGATG	4 cut(s)	24, 168, 268, 511
BtsI	GCAGTG	1 cut(s)	392
BtsIMutI	CAGTG	2 cut(s)	392, 610
CviAII	CATG	3 cut(s)	59, 68, 259
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	1 cut(s)	645
DpnII	GATC	1 cut(s)	643
EaeI	YGGCCR	1 cut(s)	487
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
EciI	GGCGGA	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	100
Eco32I	GATATC	1 cut(s)	334
Eco88I	CYCGRG	3 cut(s)	137, 234, 629
EcoNI	CCTNNNNNAGG	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	489
EcoRV	GATATC	1 cut(s)	334
EcoT38I	GRGCYC	1 cut(s)	100
FaeI	CATG	3 cut(s)	62, 71, 262
FaiI	YATR	8 cut(s)	60, 69, 260, 276, 314, 323, 382, 462
FatI	CATG	3 cut(s)	58, 67, 258
FbaI	TGATCA	1 cut(s)	643
Fnu4HI	GCNGC	4 cut(s)	171, 210, 213, 626
FokI	GGATG	4 cut(s)	11, 175, 275, 518
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	4 cut(s)	171, 210, 213, 626
FspBI	CTAG	2 cut(s)	47, 536
GluI	GCNGC	4 cut(s)	171, 210, 213, 626
GsaI	CCCAGC	1 cut(s)	157
HaeIII	GGCC	3 cut(s)	455, 489, 552
HapII	CCGG	4 cut(s)	94, 111, 410, 486
Hin1II	CATG	3 cut(s)	62, 71, 262
HindIII	AAGCTT	1 cut(s)	241
HinfI	GANTC	3 cut(s)	117, 292, 531
HpaII	CCGG	4 cut(s)	94, 111, 410, 486
HphI	GGTGA	1 cut(s)	490
Hpy188III	TCNNGA	5 cut(s)	139, 187, 556, 631, 652
Hpy99I	CGWCG	3 cut(s)	86, 254, 302
HpyAV	CCTTC	4 cut(s)	419, 445, 503, 649
HpyCH4III	ACNGT	5 cut(s)	395, 599, 605, 611, 640
HpyCH4IV	ACGT	2 cut(s)	297, 378
HpyCH4V	TGCA	4 cut(s)	71, 434, 527, 546
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 327
HpyF3I	CTNAG	1 cut(s)	40
HpySE526I	ACGT	2 cut(s)	297, 378
Hsp92II	CATG	3 cut(s)	62, 71, 262
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	1 cut(s)	643
LmnI	GCTCC	1 cut(s)	412
Lsp1109I	GCAGC	2 cut(s)	221, 612
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	2 cut(s)	47, 536
MaeII	ACGT	2 cut(s)	297, 378
MaeIII	GTNAC	2 cut(s)	599, 605
MalI	GATC	1 cut(s)	645
MboI	GATC	1 cut(s)	643
MboII	GAAGA	3 cut(s)	47, 598, 646
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	1 cut(s)	671
MlyI	GAGTC	1 cut(s)	126
MnlI	CCTC	5 cut(s)	43, 135, 203, 438, 563
MseI	TTAA	5 cut(s)	90, 198, 419, 579, 618
MslI	CAYNNNNRTG	1 cut(s)	379
MspA1I	CMGCKG	1 cut(s)	625
MspI	CCGG	4 cut(s)	94, 111, 410, 486
MspR9I	CCNGG	5 cut(s)	95, 111, 411, 486, 491
MvaI	CCWGG	1 cut(s)	491
MwoI	GCNNNNNNNGC	2 cut(s)	120, 327
NciI	CCSGG	4 cut(s)	95, 111, 411, 486
NdeII	GATC	1 cut(s)	643
NlaIII	CATG	3 cut(s)	62, 71, 262
NlaIV	GGNNCC	2 cut(s)	64, 191
NmuCI	GTSAC	1 cut(s)	605
PaeR7I	CTCGAG	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PfeI	GAWTC	2 cut(s)	292, 531
PkrI	GCNGC	4 cut(s)	172, 211, 214, 627
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
Ppu21I	YACGTR	1 cut(s)	379
Psp6I	CCWGG	1 cut(s)	489
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	489
PspN4I	GGNNCC	2 cut(s)	64, 191
PspXI	VCTCGAGB	1 cut(s)	234
PvuII	CAGCTG	1 cut(s)	625
RseI	CAYNNNNRTG	1 cut(s)	379
SaqAI	TTAA	5 cut(s)	90, 198, 419, 579, 618
SatI	GCNGC	4 cut(s)	171, 210, 213, 626
Sau3AI	GATC	1 cut(s)	643
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	5 cut(s)	95, 111, 411, 486, 491
SduI	GDGCHC	1 cut(s)	100
SfaNI	GCATC	1 cut(s)	276
Sfr274I	CTCGAG	1 cut(s)	234
SlaI	CTCGAG	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	379
SmlI	CTYRAG	2 cut(s)	234, 554
SmoI	CTYRAG	2 cut(s)	234, 554
Sse9I	AATT	1 cut(s)	671
SsiI	CCGC	5 cut(s)	114, 121, 171, 207, 213
SspMI	CTAG	2 cut(s)	47, 536
StyD4I	CCNGG	5 cut(s)	93, 109, 409, 484, 489
TaaI	ACNGT	5 cut(s)	395, 599, 605, 611, 640
TaiI	ACGT	2 cut(s)	300, 381
TaqI	TCGA	4 cut(s)	75, 235, 252, 518
TasI	AATT	1 cut(s)	671
TauI	GCSGC	2 cut(s)	173, 215
TfiI	GAWTC	2 cut(s)	292, 531
Tru1I	TTAA	5 cut(s)	90, 198, 419, 579, 618
Tru9I	TTAA	5 cut(s)	90, 198, 419, 579, 618
TscAI	CASTG	2 cut(s)	392, 610
TseFI	GTSAC	1 cut(s)	605
TseI	GCWGC	2 cut(s)	209, 625
Tsp45I	GTSAC	1 cut(s)	605
TspDTI	ATGAA	4 cut(s)	13, 47, 172, 522
TspGWI	ACGGA	1 cut(s)	356
TspRI	CASTG	2 cut(s)	392, 610
XagI	CCTNNNNNAGG	1 cut(s)	197
XapI	RAATTY	1 cut(s)	671
XhoI	CTCGAG	1 cut(s)	234
XspI	CTAG	2 cut(s)	47, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.